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Title: Analysis, exploration, manipulation, and visualization of
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Cufflinks high-throughput sequencing data.
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Description: Allows for persistent storage, access, exploration, and manipulation of Cufflinks high-throughput sequencing data. In addition, provides numerous plotting functions for commonly used visualizations.
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Depends: R (>= 2.7.0), RSQLite, ggplot2, reshape2
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Depends: R (>= 2.7.0), BiocGenerics (>= 0.3.2), RSQLite, ggplot2,
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reshape2, fastcluster, rtracklayer, Gviz
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Maintainer: Loyal A. Goff <lgoff@csail.mit.edu>
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Collate: AllGenerics.R AllClasses.R database-setup.R methods-CuffSet.R