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Viewing changes to man/expressionPlot.Rd

  • Committer: Package Import Robot
  • Author(s): Andreas Tille
  • Date: 2013-12-28 17:17:25 UTC
  • mfrom: (1.1.2)
  • Revision ID: package-import@ubuntu.com-20131228171725-polmzo8go4m371c6
Tags: 2.4.1-1
* New upstream version
* debian/rules: Remove useless creation of ${R-Depends}
* debian/control: Versioned Build-Depends: r-base-dev (>= 3.0)
* debian/README.test: add hint how to test the package

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man/expressionPlot.Rd
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A line plot (optionally with confidence intervals) detailing FPKM expression levels across conditions for a given gene(s) or feature(s)
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}
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\usage{
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\S4method{expressionPlot}{CuffFeature}(object, logMode=FALSE, pseudocount=1.0, drawSummary=FALSE, sumFun=mean_cl_boot, showErrorbars=TRUE, showStatus=TRUE, ...)
 
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\S4method{expressionPlot}{CuffFeature}(object, logMode=FALSE, pseudocount=1.0, drawSummary=FALSE, sumFun=mean_cl_boot, showErrorbars=TRUE, showStatus=TRUE, replicates=FALSE, ...)
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}
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\arguments{
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  \item{showStatus}{
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A logical value whether or not to draw visual queues for quantification status of a given gene:condition. Default = TRUE
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}
 
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  \item{replicates}{
 
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A logical value whether or not to plot individual replicates or aggregate condition values.
 
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}
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  \item{\dots}{
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Additional arguments
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}