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Viewing changes to man/CuffSet-class.Rd

  • Committer: Package Import Robot
  • Author(s): Andreas Tille
  • Date: 2013-12-28 17:17:25 UTC
  • mfrom: (1.1.2)
  • Revision ID: package-import@ubuntu.com-20131228171725-polmzo8go4m371c6
Tags: 2.4.1-1
* New upstream version
* debian/rules: Remove useless creation of ${R-Depends}
* debian/control: Versioned Build-Depends: r-base-dev (>= 3.0)
* debian/README.test: add hint how to test the package

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man/CuffSet-class.Rd
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\docType{class}
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\alias{CuffSet-class}
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%Accessors
 
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\alias{DB}
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\alias{genes}
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\alias{isoforms}
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\alias{TSS}
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\alias{splicing}
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\alias{relCDS}
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\alias{DB,CuffSet-method}
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\alias{genes,CuffSet-method}
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\alias{isoforms,CuffSet-method}
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\alias{TSS,CuffSet-method}
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    \item{\code{conditions}:}{Object of class \code{"data.frame"} ~~ }
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    \item{\code{genes}:}{Object of class \code{"CuffData"} ~~ }
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    \item{\code{isoforms}:}{Object of class \code{"CuffData"} ~~ }
 
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    \item{\code{phenoData}:}{Object of class \code{"data.frame"} ~~ }
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    \item{\code{TSS}:}{Object of class \code{"CuffData"} ~~ }
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    \item{\code{CDS}:}{Object of class \code{"CuffData"} ~~ }
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    \item{\code{promoters}:}{Object of class \code{"CuffDist"} ~~ }
 
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    \item{\code{runInfo}:}{Object of class \code{"data.frame"} ~~ }
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    \item{\code{splicing}:}{Object of class \code{"CuffDist"} ~~ }
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    \item{\code{relCDS}:}{Object of class \code{"CuffDist"} ~~ }
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  }
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\section{Accessors}{
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        \describe{
 
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                \item{DB}{\code{signature(object="CuffSet")}: Access @DB slot }
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                \item{genes}{\code{signature(object = "CuffSet")}: Access @genes slot }
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                \item{isoforms}{\code{signature(object = "CuffSet")}: Access @isoforms slot }
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                \item{TSS}{\code{signature(object = "CuffSet")}: Access @TSS slot }