← Back to branch summary

~ubuntu-branches/ubuntu/utopic/r-bioc-cummerbund/utopic

« back to all changes in this revision

Viewing changes to man/csCluster.Rd

  • Committer: Package Import Robot
  • Author(s): Andreas Tille
  • Date: 2013-12-28 17:17:25 UTC
  • mfrom: (1.1.2)
  • Revision ID: package-import@ubuntu.com-20131228171725-polmzo8go4m371c6
Tags: 2.4.1-1
* New upstream version
* debian/rules: Remove useless creation of ${R-Depends}
* debian/control: Versioned Build-Depends: r-base-dev (>= 3.0)
* debian/README.test: add hint how to test the package

Show diffs side-by-side

added added

removed removed

Lines of Context:
man/csCluster.Rd
10
10
This does not return any of the clustering information directly, but if you want it, you can retrieve it from the ggplot object returned.
11
11
}
12
12
\usage{
13
 
\S4method{csCluster}{CuffFeatureSet}(object,k,pseudocount=1,...)
 
13
\S4method{csCluster}{CuffFeatureSet}(object,k,logMode=T,pseudocount=1,...)
14
14
}
15
15
\arguments{
16
16
  \item{object}{
19
19
  \item{k}{
20
20
Number of pre-defined clusters to attempt to find.
21
21
}
 
22
  \item{logMode}{
 
23
A logical value whether or not to log-transform the FPKM values prior to clustering.
 
24
}
22
25
  \item{pseudocount}{
23
26
Value added to FPKM to avoid log-transform issues.
24
27
}