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  • Committer: Package Import Robot
  • Author(s): Andreas Tille
  • Date: 2013-12-28 17:17:25 UTC
  • mfrom: (1.1.2)
  • Revision ID: package-import@ubuntu.com-20131228171725-polmzo8go4m371c6
Tags: 2.4.1-1
* New upstream version
* debian/rules: Remove useless creation of ${R-Depends}
* debian/control: Versioned Build-Depends: r-base-dev (>= 3.0)
* debian/README.test: add hint how to test the package

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NAMESPACE
 
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importFrom(BiocGenerics, annotation)
 
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import(methods)
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#importFrom(graphics, plot)
 
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importFrom(plyr, defaults)
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exportClasses(CuffSet,
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                        CuffData,
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)
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exportMethods(
 
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                        runInfo,
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                        annotation,
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                        genes,
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                        isoforms,
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                        splicing,
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                        relCDS,
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                        fpkm,
 
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                        repFpkm,
 
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                        count,
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                        distValues,
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                        csDensity,
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                        csScatter,
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                        csVolcano,
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                        csBoxplot,
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                        csHeatmap,
 
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            csDistHeat,
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                        csCluster,
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                        csDendro,
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                        MAplot,
 
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                        dispersionPlot,
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                        csSpecificity,
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                        fpkmMatrix,
 
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                        repFpkmMatrix,
 
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                        countMatrix,
 
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                        repCountMatrix,
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                        diffData,
 
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                        diffTable,
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                        features,
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                        featureNames,
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                        samples,
 
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                        replicates,
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                        expressionPlot,
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                        expressionBarplot,
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                        getGene,
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                        getGenes,
 
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                        getFeatures,
 
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                        getGeneId,
 
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                        findGene,
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                        getSig,
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                        getSigTable,
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                        addFeatures,
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                        getLevels,
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                        findSimilar
 
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                        getRepLevels,
 
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                        findSimilar,
 
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                        makeRnk,
 
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                        genePlot,
 
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                        makeGeneRegionTrack,
 
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                        DB,
 
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                        sigMatrix,
 
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                        csScatterMatrix,
 
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                        csVolcanoMatrix,
 
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                        MDSplot,
 
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                        PCAplot,
 
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                        fpkmSCVPlot
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)
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export("readCufflinks",
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                )
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#importClassesFrom("Biobase","Versioned")
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#importClassesFrom("Biobase","VersionedBiobase")
 
 
b'\\ No newline at end of file'
 
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#importClassesFrom("Biobase","VersionedBiobase")