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Viewing changes to share/OpenMS/examples/peakpicker_tutorial_1_picked.mzML

  • Committer: Package Import Robot
  • Author(s): Filippo Rusconi
  • Date: 2012-11-12 15:58:12 UTC
  • Revision ID: package-import@ubuntu.com-20121112155812-vr15wtg9b50cuesg
Tags: upstream-1.9.0
Import upstream version 1.9.0

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share/OpenMS/examples/peakpicker_tutorial_1_picked.mzML
 
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<?xml version="1.0" encoding="ISO-8859-1"?>
 
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<mzML xmlns="http://psi.hupo.org/ms/mzml" xmlns:xsi="http://www.w3.org/2001/XMLSchema-instance" xsi:schemaLocation="http://psi.hupo.org/ms/mzml http://psidev.info/files/ms/mzML/xsd/mzML1.1.0.xsd" accession="" version="1.1.0">
 
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        <cvList count="2">
 
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                <cv id="MS" fullName="Proteomics Standards Initiative Mass Spectrometry Ontology" URI="http://psidev.cvs.sourceforge.net/*checkout*/psidev/psi/psi-ms/mzML/controlledVocabulary/psi-ms.obo"/>
 
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                <cv id="UO" fullName="Unit Ontology" URI="http://obo.cvs.sourceforge.net/obo/obo/ontology/phenotype/unit.obo"/>
 
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        </cvList>
 
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        <fileDescription>
 
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                <fileContent>
 
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                        <cvParam cvRef="MS" accession="MS:1000294" name="mass spectrum" />
 
10
                </fileContent>
 
11
                <sourceFileList count="1">
 
12
                        <sourceFile id="sf_ru_0" name="./analysis.baf" location="">
 
13
                                <cvParam cvRef="MS" accession="MS:1000569" name="SHA-1" value="" />
 
14
                                <cvParam cvRef="MS" accession="MS:1000564" name="PSI mzData file" />
 
15
                        <cvParam cvRef="MS" accession="MS:1000824" name="no nativeID format" />
 
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                        </sourceFile>
 
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                </sourceFileList>
 
18
                <contact>
 
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                        <cvParam cvRef="MS" accession="MS:1000586" name="contact name" value="tof_user, " />
 
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                        <cvParam cvRef="MS" accession="MS:1000590" name="contact organization" value="" />
 
21
                </contact>
 
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        </fileDescription>
 
23
        <sampleList count="1">
 
24
                <sample id="sa_0" name="">
 
25
                        <cvParam cvRef="MS" accession="MS:1000004" name="sample mass" value="0"  unitAccession="UO:0000021" unitName="gram" unitCvRef="UO" />
 
26
                        <cvParam cvRef="MS" accession="MS:1000005" name="sample volume" value="0" unitAccession="UO:0000098" unitName="milliliter" unitCvRef="UO" />
 
27
                        <cvParam cvRef="MS" accession="MS:1000006" name="sample concentration" value="0" unitAccession="UO:0000175" unitName="gram per liter" unitCvRef="UO" />
 
28
                </sample>
 
29
        </sampleList>
 
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        <softwareList count="3">
 
31
                <software id="so_in_0" version="" >
 
32
                        <cvParam cvRef="MS" accession="MS:1000799" name="custom unreleased software tool" value="" />
 
33
                </software>
 
34
                <software id="so_default" version="" >
 
35
                        <cvParam cvRef="MS" accession="MS:1000799" name="custom unreleased software tool" value="" />
 
36
                </software>
 
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                <software id="so_dp_sp_0_pm_0" version="1.3.3" >
 
38
                        <cvParam cvRef="MS" accession="MS:1000717" name="CompassXport" />
 
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                </software>
 
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                <software id="so_dp_sp_0_pm_1" version="version_string" >
 
41
                        <cvParam cvRef="MS" accession="MS:1000756" name="FileConverter" />
 
42
                </software>
 
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        </softwareList>
 
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        <instrumentConfigurationList count="1">
 
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                <instrumentConfiguration id="ic_0">
 
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                        <cvParam cvRef="MS" accession="MS:1000031" name="instrument model" />
 
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                        <componentList count="3">
 
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                                <source order="0">
 
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                                        <cvParam cvRef="MS" accession="MS:1000393" name="laser desorption ionization" />
 
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                                </source>
 
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                                <analyzer order="0">
 
52
                                        <cvParam cvRef="MS" accession="MS:1000014" name="accuracy" value="0" unitAccession="UO:0000169" unitName="parts per million" unitCvRef="UO" />
 
53
                                        <cvParam cvRef="MS" accession="MS:1000022" name="TOF Total Path Length" value="0" unitAccession="UO:0000008" unitName="meter" unitCvRef="UO" />
 
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                                        <cvParam cvRef="MS" accession="MS:1000024" name="final MS exponent" value="0" />
 
55
                                        <cvParam cvRef="MS" accession="MS:1000025" name="magnetic field strength" value="0" unitAccession="UO:0000228" unitName="tesla" unitCvRef="UO" />
 
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                                        <cvParam cvRef="MS" accession="MS:1000084" name="time-of-flight" />
 
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                                </analyzer>
 
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                                <detector order="0">
 
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                                        <cvParam cvRef="MS" accession="MS:1000028" name="detector resolution" value="0" />
 
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                                        <cvParam cvRef="MS" accession="MS:1000029" name="sampling frequency" value="0" unitAccession="UO:0000106" unitName="hertz" unitCvRef="UO" />
 
61
                                        <cvParam cvRef="MS" accession="MS:1000026" name="detector type" />
 
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                                </detector>
 
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                        </componentList>
 
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                        <softwareRef ref="so_in_0" />
 
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                </instrumentConfiguration>
 
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        </instrumentConfigurationList>
 
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        <dataProcessingList count="1">
 
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                <dataProcessing id="dp_sp_0">
 
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                        <processingMethod order="0" softwareRef="so_dp_sp_0_pm_0">
 
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                                <cvParam cvRef="MS" accession="MS:1000543" name="data processing action" />
 
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                        </processingMethod>
 
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                        <processingMethod order="0" softwareRef="so_dp_sp_0_pm_1">
 
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                                <cvParam cvRef="MS" accession="MS:1000544" name="Conversion to mzML" />
 
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                                <cvParam cvRef="MS" accession="MS:1000747" name="completion time" value="1999-12-31+23:59" />
 
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                                <userParam name="parameter: mode" type="xsd:string" value="test_mode"/>
 
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                        </processingMethod>
 
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                </dataProcessing>
 
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                <dataProcessing id="dp_sp_0_bi_0">
 
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                        <processingMethod order="0" softwareRef="so_default">
 
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                                <cvParam cvRef="MS" accession="MS:1000544" name="Conversion to mzML" />
 
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                                <userParam name="warning" type="xsd:string" value="fictional processing method used to fulfill format requirements" />
 
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                        </processingMethod>
 
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                </dataProcessing>
 
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                <dataProcessing id="dp_sp_0_bi_1">
 
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                        <processingMethod order="0" softwareRef="so_default">
 
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                                <cvParam cvRef="MS" accession="MS:1000544" name="Conversion to mzML" />
 
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                                <userParam name="warning" type="xsd:string" value="fictional processing method used to fulfill format requirements" />
 
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                        </processingMethod>
 
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                </dataProcessing>
 
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                <dataProcessing id="dp_sp_0_bi_2">
 
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                        <processingMethod order="0" softwareRef="so_default">
 
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                                <cvParam cvRef="MS" accession="MS:1000544" name="Conversion to mzML" />
 
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                                <userParam name="warning" type="xsd:string" value="fictional processing method used to fulfill format requirements" />
 
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                        </processingMethod>
 
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                </dataProcessing>
 
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                <dataProcessing id="dp_sp_0_bi_3">
 
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                        <processingMethod order="0" softwareRef="so_default">
 
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                                <cvParam cvRef="MS" accession="MS:1000544" name="Conversion to mzML" />
 
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                                <userParam name="warning" type="xsd:string" value="fictional processing method used to fulfill format requirements" />
 
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                        </processingMethod>
 
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                </dataProcessing>
 
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                <dataProcessing id="dp_sp_0_bi_4">
 
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                        <processingMethod order="0" softwareRef="so_default">
 
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                                <cvParam cvRef="MS" accession="MS:1000544" name="Conversion to mzML" />
 
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                                <userParam name="warning" type="xsd:string" value="fictional processing method used to fulfill format requirements" />
 
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                        </processingMethod>
 
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                </dataProcessing>
 
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                <dataProcessing id="dp_sp_0_bi_5">
 
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                        <processingMethod order="0" softwareRef="so_default">
 
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                                <cvParam cvRef="MS" accession="MS:1000544" name="Conversion to mzML" />
 
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                                <userParam name="warning" type="xsd:string" value="fictional processing method used to fulfill format requirements" />
 
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                        </processingMethod>
 
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                </dataProcessing>
 
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                <dataProcessing id="dp_sp_0_bi_6">
 
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                        <processingMethod order="0" softwareRef="so_default">
 
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                                <cvParam cvRef="MS" accession="MS:1000544" name="Conversion to mzML" />
 
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                                <userParam name="warning" type="xsd:string" value="fictional processing method used to fulfill format requirements" />
 
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                        </processingMethod>
 
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                </dataProcessing>
 
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        </dataProcessingList>
 
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        <run id="ru_0" defaultInstrumentConfigurationRef="ic_0" sampleRef="sa_0" defaultSourceFileRef="sf_ru_0">
 
122
                <spectrumList count="1" defaultDataProcessingRef="dp_sp_0">
 
123
                        <spectrum id="spectrum=81" index="0" defaultArrayLength="94" dataProcessingRef="dp_sp_0">
 
124
                                <cvParam cvRef="MS" accession="MS:1000525" name="spectrum representation" />
 
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                                <cvParam cvRef="MS" accession="MS:1000511" name="ms level" value="1" />
 
126
                                <cvParam cvRef="MS" accession="MS:1000294" name="mass spectrum" />
 
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                                <scanList count="1">
 
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                                        <cvParam cvRef="MS" accession="MS:1000795" name="no combination" />
 
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                                        <scan>
 
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                                                <cvParam cvRef="MS" accession="MS:1000016" name="scan start time" value="384" unitAccession="UO:0000010" unitName="second" unitCvRef="UO" />
 
131
                                        </scan>
 
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                                </scanList>
 
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                                <binaryDataArrayList count="9">
 
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                                        <binaryDataArray encodedLength="1004">
 
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                                                <cvParam cvRef="MS" accession="MS:1000514" name="m/z array" unitAccession="MS:1000040" unitName="m/z" unitCvRef="MS" />
 
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                                                <cvParam cvRef="MS" accession="MS:1000523" name="64-bit float" />
 
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                                                <cvParam cvRef="MS" accession="MS:1000576" name="no compression" />
 
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                                        </binaryDataArray>
 
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                                                <cvParam cvRef="MS" accession="MS:1000515" name="intensity array" unitAccession="MS:1000131" unitName="number of counts" unitCvRef="MS"/>
 
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                                                <cvParam cvRef="MS" accession="MS:1000521" name="32-bit float" />
 
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                                                <cvParam cvRef="MS" accession="MS:1000576" name="no compression" />
 
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                                                <cvParam cvRef="MS" accession="MS:1000523" name="64-bit float" />
 
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                                                <cvParam cvRef="MS" accession="MS:1000576" name="no compression" />
 
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                                                <cvParam cvRef="MS" accession="MS:1000786" name="non-standard data array" value="rightWidth" />
 
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                                                <cvParam cvRef="MS" accession="MS:1000523" name="64-bit float" />
 
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                                                <cvParam cvRef="MS" accession="MS:1000786" name="non-standard data array" value="peakShape" />
 
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181
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                                                <cvParam cvRef="MS" accession="MS:1000576" name="no compression" />
 
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                                                <cvParam cvRef="MS" accession="MS:1000786" name="non-standard data array" value="SignalToNoise" />
 
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192
</mzML>
 
 
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