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Viewing changes to source/TEST/TOPP/PeptideIndexer_2_out.idXML

  • Committer: Package Import Robot
  • Author(s): Filippo Rusconi
  • Date: 2012-11-12 15:58:12 UTC
  • Revision ID: package-import@ubuntu.com-20121112155812-vr15wtg9b50cuesg
Tags: upstream-1.9.0
Import upstream version 1.9.0

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source/TEST/TOPP/PeptideIndexer_2_out.idXML
 
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<?xml version="1.0" encoding="UTF-8"?>
 
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<?xml-stylesheet type="text/xsl" href="file:///C:/dev/OpenMS/share/OpenMS/XSL/IdXML.xsl"?>
 
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<IdXML version="1.2" xsi:noNamespaceSchemaLocation="http://open-ms.sourceforge.net/schemas/IdXML_1_2.xsd" xmlns:xsi="http://www.w3.org/2001/XMLSchema-instance">
 
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        <SearchParameters id="SP_0" db="" db_version="" taxonomy="" mass_type="monoisotopic" charges="" enzyme="unknown_enzyme" missed_cleavages="0" precursor_peak_tolerance="0" peak_mass_tolerance="0" >
 
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        </SearchParameters>
 
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        <IdentificationRun date="2005-01-27T17:47:41" search_engine="" search_engine_version="" search_parameters_ref="SP_0" >
 
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                <ProteinIdentification score_type="Mascot" higher_score_better="true" significance_threshold="0" >
 
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                        <ProteinHit id="PH_0" accession="test" score="0" sequence="GSMTVDMQEIGSTEMPYEVPTQPNATSASAGRGWFDGPSFKVPSVPTRPSGIFRRPSRIKPEFSFKEKVSELVSPAVYTFGLFVQNASESLTSDDPSDVPTQRTFKSDFQSVGSMTVDMQEIGSTEMPYEVPTQPNATSASAGRGWFDGPSFKVPSVPTRPSGIFRRPSRIKPEFSFKEKVSELVSPAVYTFGLFVQNASESLTSDDPSDVPTQRTFKSDFQSVAXXSTFDFYQRRLVTLAESPRAPSPGSMTVDMQEIGSTEMPYEVPTQPNATSASAGRGWFDGPSFKVPSVPTRPSGIFRRPSRIKPEFSFKEKVSELVSPAVYTFGLFVQNASESLTSDDPSDVPTQRTFKSDFQSV" >
 
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                        </ProteinHit>
 
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                        <ProteinHit id="PH_1" accession="BSA2" score="3.33299994468689" sequence="EWATYTCVLGFHVYVPVR" >
 
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                                <UserParam type="string" name="my_user_param" value="veryimportant"/>
 
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                        </ProteinHit>
 
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                        <ProteinHit id="PH_2" accession="BSA3" score="0" sequence="AXXXSTFDFYQRRLVTLAESPRAPSX" >
 
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                        </ProteinHit>
 
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                        <ProteinHit id="PH_3" accession="test2_rev" score="0" sequence="EDQSCPSERRRAFSRLRFGPS" >
 
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                        </ProteinHit>
 
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                        <ProteinHit id="PH_4" accession="BSA4" score="0" sequence="EDQSCPSERRRAFSRLRXXXX" >
 
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                        </ProteinHit>
 
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                        <ProteinHit id="PH_5" accession="Thyroglo" score="0" sequence="AAAAAEWATYTCVLGFHVYVPVR" >
 
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                        </ProteinHit>
 
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                        <ProteinHit id="PH_6" accession="BSA4_rev" score="0" sequence="EDQSCPSERRRAFSRLRXXXX" >
 
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                        </ProteinHit>
 
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                        <ProteinHit id="PH_7" accession="Thyroglo_rev" score="0" sequence="AAAAAEWATYTCVLGFHVYVPVR" >
 
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                        </ProteinHit>
 
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                        <ProteinHit id="PH_8" accession="revonly_rev" score="0" sequence="DFIANGER" >
 
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                        </ProteinHit>
 
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                </ProteinIdentification>
 
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                <PeptideIdentification score_type="Mascot" higher_score_better="true" significance_threshold="31.8621" MZ="0" RT="0" >
 
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                        <PeptideHit score="40" sequence="STFDFYQRRLVTLAESPRAPSP" charge="2" protein_refs="PH_0 PH_2" >
 
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                                <UserParam type="string" name="target_decoy" value="target"/>
 
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                                <UserParam type="string" name="protein_references" value="non-unique"/>
 
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                        </PeptideHit>
 
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                        <PeptideHit score="40" sequence="EDQSCPSERRRAFSRLRFGPS" charge="2" protein_refs="PH_3 PH_4 PH_6" >
 
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                                <UserParam type="string" name="target_decoy" value="target+decoy"/>
 
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                                <UserParam type="string" name="protein_references" value="non-unique"/>
 
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                        </PeptideHit>
 
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                        <PeptideHit score="40" sequence="EWATYTCVLGFHVYVPVR" charge="2" protein_refs="PH_1 PH_5 PH_7" >
 
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                                <UserParam type="string" name="target_decoy" value="target+decoy"/>
 
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                                <UserParam type="string" name="protein_references" value="non-unique"/>
 
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                        </PeptideHit>
 
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                </PeptideIdentification>
 
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                <PeptideIdentification score_type="Mascot" higher_score_better="true" significance_threshold="31.8621" MZ="0" RT="0" >
 
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                        <PeptideHit score="40" sequence="EWATYTCVLGFHVYVPVR" charge="2" protein_refs="PH_1 PH_5 PH_7" >
 
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                                <UserParam type="string" name="target_decoy" value="target+decoy"/>
 
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                                <UserParam type="string" name="protein_references" value="non-unique"/>
 
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                        </PeptideHit>
 
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                        <PeptideHit score="0.0001" sequence="UNMATCHED" charge="2" >
 
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                                <UserParam type="string" name="target_decoy" value=""/>
 
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                                <UserParam type="string" name="protein_references" value="unmatched"/>
 
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                        </PeptideHit>
 
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                </PeptideIdentification>
 
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                <PeptideIdentification score_type="Mascot" higher_score_better="true" significance_threshold="31.8621" MZ="0" RT="0" >
 
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                        <PeptideHit score="0.0001" sequence="FIANGE" charge="2" protein_refs="PH_8" >
 
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                                <UserParam type="string" name="target_decoy" value="decoy"/>
 
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                                <UserParam type="string" name="protein_references" value="unique"/>
 
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                        </PeptideHit>
 
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                </PeptideIdentification>
 
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        </IdentificationRun>
 
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</IdXML>