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Viewing changes to source/TEST/data/MzMLFile_3_invalid.mzML

  • Committer: Package Import Robot
  • Author(s): Filippo Rusconi
  • Date: 2012-11-12 15:58:12 UTC
  • Revision ID: package-import@ubuntu.com-20121112155812-vr15wtg9b50cuesg
Tags: upstream-1.9.0
Import upstream version 1.9.0

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source/TEST/data/MzMLFile_3_invalid.mzML
 
1
<?xml version="1.0" encoding="ISO-8859-1"?>
 
2
<mzML xmlns="http://psi.hupo.org/ms/mzml" xmlns:xsi="http://www.w3.org/2001/XMLSchema-instance" xsi:schemaLocation="http://psi.hupo.org/ms/mzml http://psidev.info/files/ms/mzML/xsd/mzML1.1.0.xsd" accession="OpenMS_document_id" version="1.1.0">
 
3
  <cvList count="2">
 
4
    <cv id="MS" fullName="Proteomics Standards Initiative Mass Spectrometry Ontology" version="2.0.2" URI="http://psidev.sourceforge.net/ms/xml/mzdata/psi-ms.2.0.2.obo"/>
 
5
    <cv id="UO" fullName="Unit Ontology" version="unknown" URI="http://obo.cvs.sourceforge.net/obo/obo/ontology/phenotype/unit.obo"/>
 
6
  </cvList>
 
7
  <fileDescription>
 
8
  
 
9
    <fileContent>
 
10
      <cvParam cvRef="MS" accession="MS:1000580" name="MSn spectrum" value=""/>
 
11
    </fileContent>
 
12
    
 
13
    <sourceFileList count="3">
 
14
      <sourceFile id="sf1" name="tiny1.RAW" location="file:///F:/data/Exp01">
 
15
        <cvParam cvRef="MS" accession="MS:1000563" name="Thermo RAW file"/>
 
16
        <cvParam cvRef="MS" accession="MS:1000569" name="SHA-1" value="71be39fb2700ab2f3c8b2234b91274968b6899b1"/>
 
17
        <cvParam cvRef="MS" accession="MS:1000774" name="multiple peak list nativeID format" value=""/>
 
18
                                <userParam name="name" value="sourcefile1"/>
 
19
      </sourceFile>
 
20
      <sourceFile id="sf_parameters" name="parameters.par" location="file:///C:/settings/">
 
21
        <cvParam cvRef="MS" accession="MS:1000563" name="Thermo RAW file"/>
 
22
        <cvParam cvRef="MS" accession="MS:1000569" name="SHA-1" value="61be39fb2700ab2f3c8b2234b91274968b6899b1"/>
 
23
                                <cvParam cvRef="MS" accession="MS:1000824" name="no nativeID format" />
 
24
                                <userParam name="name" value="sourcefile3"/>
 
25
      </sourceFile>
 
26
      <sourceFile id="sf_spectrum_2" name="tiny1.dta" location="file:///F:/data/Exp01">
 
27
        <cvParam cvRef="MS" accession="MS:1000613" name="DTA file" value=""/>
 
28
        <cvParam cvRef="MS" accession="MS:1000569" name="SHA-1" value="81be39fb2700ab2f3c8b2234b91274968b6899b1"/>
 
29
                                <cvParam cvRef="MS" accession="MS:1000824" name="no nativeID format" />
 
30
                                <userParam name="name" value="sourcefile4"/>
 
31
      </sourceFile>
 
32
    </sourceFileList>
 
33
    
 
34
    <contact>
 
35
      <cvParam cvRef="MS" accession="MS:1000586" name="contact name" value="William Pennington"/>
 
36
      <cvParam cvRef="MS" accession="MS:1000587" name="contact address" value="Higglesworth University, 12 Higglesworth Avenue, 12045, HI, USA"/>
 
37
      <cvParam cvRef="MS" accession="MS:1000588" name="contact URL" value="http://www.higglesworth.edu/"/>
 
38
      <cvParam cvRef="MS" accession="MS:1000589" name="contact email" value="wpennington@higglesworth.edu"/>
 
39
                        <cvParam cvRef="MS" accession="MS:1000590" name="contact organization" value="dort"/>
 
40
                        <userParam name="name" value="contact1"/>
 
41
    </contact>
 
42
    
 
43
    <contact>
 
44
      <cvParam cvRef="MS" accession="MS:1000586" name="contact name" value="Drek'Thar"/>
 
45
                        <cvParam cvRef="MS" accession="MS:1000590" name="contact organization" value="da"/>
 
46
                        <userParam name="name" value="contact2"/>
 
47
    </contact>
 
48
    
 
49
  </fileDescription>
 
50
  
 
51
  <referenceableParamGroupList count="2">
 
52
    <referenceableParamGroup id="CommonMS1SpectrumParams">
 
53
        <cvParam cvRef="MS" accession="MS:1000511" name="ms level" value="1"/>
 
54
      <cvParam cvRef="MS" accession="MS:1000130" name="positive scan" value=""/>
 
55
    </referenceableParamGroup>
 
56
    <referenceableParamGroup id="CommonMS2SpectrumParams">
 
57
        <cvParam cvRef="MS" accession="MS:1000511" name="ms level" value="2"/>
 
58
      <cvParam cvRef="MS" accession="MS:1000130" name="positive scan" value=""/>
 
59
    </referenceableParamGroup>
 
60
    <referenceableParamGroup id="ErrorGroup">
 
61
        <cvParam cvRef="MS" accession="MS:1000127" name="centroid spectrum" value=""/>
 
62
    </referenceableParamGroup>
 
63
  </referenceableParamGroupList>
 
64
  
 
65
  <sampleList count="1">
 
66
    <sample id="sample1" name="Sample1">
 
67
                        <cvParam cvRef="MS" accession="MS:1000004" name="sample mass" value="11.7" unitAccession="UO:0000021" unitName="gram" unitCvRef="UO"/>
 
68
                        <cvParam cvRef="MS" accession="MS:1000001" name="sample number" value="5" unitAccession="UO:0000022" unitName="milligram" unitCvRef="UO"/>
 
69
                        <cvParam cvRef="MS" accession="MS:1000005" name="sample volume" value="3.1" unitAccession="UO:0000022" unitName="milligram" unitCvRef="UO"/>
 
70
                        <cvParam cvRef="MS" accession="MS:1000006" name="sample concentration" value="5.5"/>
 
71
                        <cvParam cvRef="MS" accession="MS:1000053" name="sample batch" value="4.4"/>
 
72
      <userParam name="name" value="sample"/>
 
73
    </sample>
 
74
    <sample id="sample2"/>
 
75
  </sampleList>
 
76
 
 
77
  <softwareList count="3">
 
78
    <software id="Bioworks" version="3.3.1 sp1">
 
79
      <cvParam cvRef="MS" accession="MS:1000533" name="Bioworks"/>
 
80
    </software>
 
81
    <software id="pwiz" version="1.0">
 
82
      <cvParam cvRef="MS" accession="MS:1000615" name="ProteoWizard"/>
 
83
    </software>
 
84
    <software id="Xcalibur" version="2.0.5">
 
85
      <cvParam cvRef="MS" accession="MS:1000532" name="Xcalibur"/>
 
86
    </software>
 
87
  </softwareList>
 
88
 
 
89
  <instrumentConfigurationList count="1">
 
90
    <instrumentConfiguration id="LCQDeca">
 
91
      <cvParam cvRef="MS" accession="MS:1000554" name="LCQ Deca" value=""/>
 
92
      <cvParam cvRef="MS" accession="MS:1000529" name="instrument serial number" value="23433"/>
 
93
      <cvParam cvRef="MS" accession="MS:1000032" name="customization" value="Umbau"/>
 
94
      <cvParam cvRef="MS" accession="MS:1000221" name="magnetic deflection" value=""/>
 
95
      <userParam name="name" value="instrumentConfiguration"/>
 
96
      <componentList count="6">
 
97
        <source order="101">
 
98
          <cvParam cvRef="MS" accession="MS:1000056" name="direct inlet" value=""/>
 
99
          <cvParam cvRef="MS" accession="MS:1000073" name="electrospray ionization" value=""/>
 
100
          <userParam name="name" value="source1"/>
 
101
        </source>
 
102
        <source order="102">
 
103
          <cvParam cvRef="MS" accession="MS:1000056" name="direct inlet" value=""/>
 
104
          <cvParam cvRef="MS" accession="MS:1000074" name="fast atom bombardment ionization" value=""/>
 
105
          <userParam name="name" value="source2"/>
 
106
        </source>
 
107
        <analyzer order="201">
 
108
          <cvParam cvRef="MS" accession="MS:1000082" name="quadrupole ion trap" value=""/>
 
109
          <cvParam cvRef="MS" accession="MS:1000025" name="magnetic field strength" value="14.56" unitAccession="UO:0000228" unitName="tesla" unitCvRef="UO"/>
 
110
          <userParam name="name" value="analyzer1"/>
 
111
        </analyzer>
 
112
        <analyzer order="202">
 
113
          <cvParam cvRef="MS" accession="MS:1000291" name="linear ion trap" value=""/>
 
114
          <cvParam cvRef="MS" accession="MS:1000025" name="magnetic field strength" value="14.56" unitAccession="UO:0000228" unitName="tesla" unitCvRef="UO"/>
 
115
          <userParam name="name" value="analyzer2"/>
 
116
        </analyzer>
 
117
        <detector order="301">
 
118
          <cvParam cvRef="MS" accession="MS:1000253" name="electron multiplier" value=""/>
 
119
          <cvParam cvRef="MS" accession="MS:1000028" name="detector resolution" value="5.1"/>
 
120
          <cvParam cvRef="MS" accession="MS:1000029" name="sampling frequency" value="1.1" unitAccession="UO:0000106" unitName="hertz" unitCvRef="UO"/>
 
121
          <cvParam cvRef="MS" accession="MS:1000119" name="time-digital converter" value=""/>
 
122
          <userParam name="name" value="detector1"/>
 
123
        </detector>
 
124
        <detector order="302">
 
125
          <cvParam cvRef="MS" accession="MS:1000253" name="electron multiplier" value=""/>
 
126
          <cvParam cvRef="MS" accession="MS:1000028" name="detector resolution" value="6.1"/>
 
127
          <cvParam cvRef="MS" accession="MS:1000029" name="sampling frequency" value="1.1" unitAccession="UO:0000106" unitName="hertz" unitCvRef="UO"/>
 
128
          <cvParam cvRef="MS" accession="MS:1000119" name="time-digital converter" value=""/>
 
129
          <userParam name="name" value="detector2"/>
 
130
        </detector>
 
131
      </componentList>
 
132
      <softwareRef ref="Bioworks"/>
 
133
    </instrumentConfiguration>
 
134
  </instrumentConfigurationList>
 
135
  
 
136
  <dataProcessingList count="2">
 
137
    <dataProcessing id="pwizconversion">
 
138
      <processingMethod order="2" softwareRef="pwiz">
 
139
        <cvParam cvRef="MS" accession="MS:1000544" name="Conversion to mzML" value=""/>
 
140
      </processingMethod>
 
141
    </dataProcessing>
 
142
    <dataProcessing id="XcaliburProcessing">
 
143
      <processingMethod order="1" softwareRef="Xcalibur">
 
144
        <cvParam cvRef="MS" accession="MS:1000033" name="deisotoping" value=""/>
 
145
        <cvParam cvRef="MS" accession="MS:1000629" name="low intensity threshold" value="5.9" unitAccession="MS:1000131" unitName="number of counts" unitCvRef="MS"/>
 
146
        <cvParam cvRef="MS" accession="MS:1000631" name="high intensity threshold" value="10.9" unitAccession="MS:1000131" unitName="number of counts" unitCvRef="MS"/>
 
147
                        <userParam name="p1" value="value1"/>
 
148
      </processingMethod>
 
149
      <processingMethod order="2" softwareRef="Xcalibur">
 
150
        <cvParam cvRef="MS" accession="MS:1000034" name="charge deconvolution" value=""/>
 
151
                        <userParam name="p2" value="value2"/>
 
152
      </processingMethod>
 
153
    </dataProcessing>
 
154
  </dataProcessingList>
 
155
  
 
156
  <run id="Exp01" defaultSourceFileRef="sf1" defaultInstrumentConfigurationRef="LCQDeca" sampleRef="sample1" startTimeStamp="2007-06-27T15:23:45.00035">
 
157
        <userParam name="int" type="xsd:integer" value="5"/>
 
158
        <userParam name="string" value="bla"/>
 
159
        <userParam name="flag"/>
 
160
        <userParam name="float" type="xsd:float" value="5.11"/>
 
161
    
 
162
    <spectrumList count="4" defaultDataProcessingRef="pwizconversion">
 
163
 
 
164
      <spectrum index="0" id="19" defaultArrayLength="15">
 
165
        <referenceableParamGroupRef ref="ErrorGroup"/>
 
166
        <referenceableParamGroupRef ref="CommonMS1SpectrumParams"/>
 
167
        <cvParam cvRef="MS" accession="MS:1000580" name="MSn spectrum" value="4444"/>
 
168
        <cvParam cvRef="MS" accession="MS:1000528" name="lowest observed m/z" value="abc" unitAccession="MS:1000040" unitName="m/z" unitCvRef="MS"/>
 
169
        <cvParam cvRef="MS" accession="MS:1000527" name="highest observed m/z" value="" unitAccession="MS:1000040" unitName="m/z" unitCvRef="MS"/>
 
170
        <cvParam cvRef="MS" accession="MS:1000504" name="base peak m/z" value="445.347" unitAccession="MS:1000040" unitName="m/z" unitCvRef="MS"/>
 
171
        <cvParam cvRef="MS" accession="MS:1000505" name="base peak intensity" value="120053" unitAccession="MS:1000131" unitName="number of counts" unitCvRef="MS"/>
 
172
        <cvParam cvRef="MS" accession="MS:1000285" name="total ion current" value="16675500"/>
 
173
        <scanList count="2">
 
174
                <cvParam cvRef="MS" accession="MS:1000573" name="median of spectra"/>
 
175
                <userParam name="name" value="acquisition_list"/>
 
176
                <scan number="4711">
 
177
                        <cvParam cvRef="MS" accession="MS:1000016" name="scan start time" value="5.1" unitAccession="UO:0000010" unitName="second" unitCvRef="UO"/>
 
178
                        <cvParam cvRef="MS" accession="MS:1000512" name="filter string" value="+ c NSI Full ms [ 400.00-1800.00]"/>
 
179
                        <cvParam cvRef="MS" accession="MS:1000616" name="preset scan configuration" value="3"/>
 
180
            <cvParam cvRef="MS" accession="MS:1000011" name="mass resolution" value="4.3"/>
 
181
                        <userParam name="name" value="acquisition1"/>
 
182
          </scan>
 
183
                <scan number="4712">
 
184
                        <userParam name="name" value="acquisition2"/>
 
185
                </scan>
 
186
        </scanList>
 
187
        <binaryDataArrayList count="2">
 
188
          <binaryDataArray encodedLength="160" dataProcessingRef="XcaliburProcessing">
 
189
            <cvParam cvRef="MS" accession="MS:1000523" name="64-bit float" value=""/>
 
190
            <cvParam cvRef="MS" accession="MS:1000576" name="no compression" value=""/>
 
191
            <cvParam cvRef="MS" accession="MS:1000514" name="m/z array" unitAccession="MS:1000040" unitName="m/z" unitCvRef="MS"/>
 
192
                        <userParam name="mzname" value="mzarray1"/>
 
193
            <binary>AAAAAAAAAAAAAAAAAADwPwAAAAAAAABAAAAAAAAACEAAAAAAAAAQQAAAAAAAABRAAAAAAAAAGEAAAAAAAAAcQAAAAAAAACBAAAAAAAAAIkAAAAAAAAAkQAAAAAAAACZAAAAAAAAAKEAAAAAAAAAqQAAAAAAAACxA</binary>
 
194
          </binaryDataArray>
 
195
          <binaryDataArray encodedLength="160" dataProcessingRef="XcaliburProcessing">
 
196
            <cvParam cvRef="MS" accession="MS:1000523" name="64-bit float" value=""/>
 
197
            <cvParam cvRef="MS" accession="MS:1000576" name="no compression" value=""/>
 
198
            <cvParam cvRef="MS" accession="MS:1000515" name="intensity array" value="" unitAccession="MS:1000131" unitName="number of counts" unitCvRef="MS"/>
 
199
                        <userParam name="itname" value="itarray1"/>
 
200
            <binary>AAAAAAAALkAAAAAAAAAsQAAAAAAAACpAAAAAAAAAKEAAAAAAAAAmQAAAAAAAACRAAAAAAAAAIkAAAAAAAAAgQAAAAAAAABxAAAAAAAAAGEAAAAAAAAAUQAAAAAAAABBAAAAAAAAACEAAAAAAAAAAQAAAAAAAAPA/</binary>
 
201
          </binaryDataArray>
 
202
        </binaryDataArrayList>
 
203
      </spectrum>
 
204
 
 
205
 
 
206
      <spectrum index="1" id="20" defaultArrayLength="10" sourceFileRef="sf_spectrum_2">
 
207
        <referenceableParamGroupRef ref="CommonMS2SpectrumParams"/>
 
208
        <cvParam cvRef="MS" accession="MS:1000127" name="centroid spectrum" value=""/>
 
209
        <cvParam cvRef="MS" accession="MS:1000528" name="lowest observed m/z" value="320.39" unitAccession="MS:1000040" unitName="m/z" unitCvRef="MS"/>
 
210
        <cvParam cvRef="MS" accession="MS:1000527" name="highest observed m/z" value="1003.56"/>
 
211
        <cvParam cvRef="MS" accession="MS:1000504" name="base peak m/z" value="456.347" unitAccession="MS:1000040" unitName="m/z" unitCvRef="MS"/>
 
212
        <cvParam cvRef="MS" accession="MS:1000505" name="base peak intensity" value="23433" unitAccession="MS:1000131" unitName="number of counts" unitCvRef="MS"/>
 
213
        <cvParam cvRef="MS" accession="MS:1000285" name="total ion current" value="16675500"/>
 
214
        <cvParam cvRef="MS" accession="MS:1000580" name="MSn spectrum" value=""/>
 
215
        <userParam name="name" value="spectrum2"/>
 
216
        <scanList count="1">
 
217
                                        <cvParam cvRef="MS" accession="MS:1000795" name="no combination"/>
 
218
                <scan number="0">
 
219
                        <cvParam cvRef="MS" accession="MS:1000016" name="scan start time" value="5.2" unitAccession="UO:0000010" unitName="second" unitCvRef="UO"/>
 
220
                        <cvParam cvRef="MS" accession="MS:1000512" name="filter string" value="+ c d Full ms2  445.35@cid35.00 [ 110.00-905.00]"/>
 
221
                        <cvParam cvRef="MS" accession="MS:1000616" name="preset scan configuration" value="4"/>
 
222
                        <cvParam cvRef="MS" accession="MS:1000011" name="mass resolution" value="4.1"/>
 
223
                      </scan>
 
224
                    </scanList>
 
225
        <precursorList count="1">
 
226
          <precursor spectrumRef="S19">
 
227
            <selectedIonList count="1">
 
228
              <selectedIon>
 
229
                <cvParam cvRef="MS" accession="MS:1000744" name="selected ion m/z" value="5.55" unitAccession="MS:1000040" unitName="m/z" unitCvRef="MS"/>
 
230
                <cvParam cvRef="MS" accession="MS:1000042" name="peak intensity" value="120053" unitAccession="MS:1000132" unitName="percent of base peak" unitCvRef="MS" />
 
231
                <cvParam cvRef="MS" accession="MS:1000041" name="charge state" value="2"/>
 
232
                <cvParam cvRef="MS" accession="MS:1000633" name="possible charge state" value="1"/>
 
233
                <cvParam cvRef="MS" accession="MS:1000633" name="possible charge" value="3"/>
 
234
                <cvParam cvRef="MS" accession="MS:1000633" name="possible charge state" value="4"/>
 
235
                                        <userParam name="siname" value="selectedion1"/>
 
236
              </selectedIon>
 
237
            </selectedIonList>
 
238
            <activation>
 
239
              <cvParam cvRef="MS" accession="MS:1000133" name="collision-induced dissociation" value=""/>
 
240
              <cvParam cvRef="MS" accession="MS:1000509" name="activation energy" value="35" unitAccession="UO:0000266" unitName="electronvolt" unitCvRef="UO" />
 
241
              <cvParam cvRef="MS" accession="MS:1000045" name="collision energy" value="4.2" unitAccession="UO:0000266" unitName="electronvolt" unitCvRef="UO"/>
 
242
              <userParam name="acname" value="activation1"/>
 
243
            </activation>
 
244
          </precursor>
 
245
        </precursorList>
 
246
        <binaryDataArrayList count="2">
 
247
          <binaryDataArray encodedLength="108" dataProcessingRef="XcaliburProcessing">
 
248
            <cvParam cvRef="MS" accession="MS:1000523" name="64-bit float" value=""/>
 
249
            <cvParam cvRef="MS" accession="MS:1000576" name="no compression" value=""/>
 
250
            <cvParam cvRef="MS" accession="MS:1000514" name="m/z array" unitAccession="MS:1000040" unitName="m/z" unitCvRef="MS"/>
 
251
                        <userParam name="mzname" value="mzarray2"/>
 
252
            <binary>AAAAAAAAAAAAAAAAAAAAQAAAAAAAABBAAAAAAAAAGEAAAAAAAAAgQAAAAAAAACRAAAAAAAAAKEAAAAAAAAAsQAAAAAAAADBAAAAAAAAAMkA=</binary>
 
253
          </binaryDataArray>
 
254
          <binaryDataArray encodedLength="108" dataProcessingRef="XcaliburProcessing">
 
255
            <cvParam cvRef="MS" accession="MS:1000523" name="64-bit float" value=""/>
 
256
            <cvParam cvRef="MS" accession="MS:1000576" name="no compression" value=""/>
 
257
            <cvParam cvRef="MS" accession="MS:1000515" name="intensity array" value="" unitAccession="MS:1000131" unitName="number of counts" unitCvRef="MS"/>
 
258
                        <userParam name="itname" value="itarray2"/>
 
259
            <binary>AAAAAAAANEAAAAAAAAAyQAAAAAAAADBAAAAAAAAALEAAAAAAAAAoQAAAAAAAACRAAAAAAAAAIEAAAAAAAAAYQAAAAAAAABBAAAAAAAAAAEA=</binary>
 
260
          </binaryDataArray>
 
261
          <binaryDataArray encodedLength="108" dataProcessingRef="XcaliburProcessing">
 
262
            <cvParam cvRef="MS" accession="MS:1000523" name="64-bit float" value=""/>
 
263
            <cvParam cvRef="MS" accession="MS:1000576" name="no compression" value=""/>
 
264
            <cvParam cvRef="MS" accession="MS:1000517" name="signal to noise array" value=""/>
 
265
                        <userParam name="name" value="binaryDataArray_sn"/>
 
266
            <userParam name="name2" value="binaryDataArray_sn2"/>
 
267
            <binary>AAAAAAAANEAAAAAAAAAyQAAAAAAAADBAAAAAAAAALEAAAAAAAAAoQAAAAAAAACRAAAAAAAAAIEAAAAAAAAAYQAAAAAAAABBAAAAAAAAAAEA=</binary>
 
268
          </binaryDataArray>
 
269
          <binaryDataArray encodedLength="108" dataProcessingRef="XcaliburProcessing">
 
270
            <cvParam cvRef="MS" accession="MS:1000523" name="64-bit float" value=""/>
 
271
            <cvParam cvRef="MS" accession="MS:1000576" name="no compression" value=""/>
 
272
            <cvParam cvRef="MS" accession="MS:1000516" name="charge array" value=""/>
 
273
                        <userParam name="name" value="binaryDataArray_c"/>
 
274
            <binary>AAAAAAAANEAAAAAAAAAyQAAAAAAAADBAAAAAAAAALEAAAAAAAAAoQAAAAAAAACRAAAAAAAAAIEAAAAAAAAAYQAAAAAAAABBAAAAAAAAAAEA=</binary>
 
275
          </binaryDataArray>
 
276
        </binaryDataArrayList>
 
277
      </spectrum>
 
278
 
 
279
      <spectrum index="2" id="19" defaultArrayLength="15">
 
280
        <referenceableParamGroupRef ref="CommonMS1SpectrumParams"/>
 
281
        <cvParam cvRef="MS" accession="MS:1000127" name="centroid spectrum" value=""/>
 
282
        <cvParam cvRef="MS" accession="MS:1000528" name="lowest observed m/z" value="400.39" unitAccession="MS:1000040" unitName="m/z" unitCvRef="MS"/>
 
283
        <cvParam cvRef="MS" accession="MS:1000504" name="base peak m/z" value="445.347" unitAccession="MS:1000040" unitName="m/z" unitCvRef="MS"/>
 
284
        <cvParam cvRef="MS" accession="MS:1000505" name="base peak intensity" value="120053" unitAccession="MS:1000131" unitName="number of counts" unitCvRef="MS"/>
 
285
        <cvParam cvRef="MS" accession="MS:1000285" name="total ion current" value="16675500"/>
 
286
                <cvParam cvRef="MS" accession="MS:1000580" name="MSn spectrum" value=""/>
 
287
        <userParam name="name" value="spectrum3"/>
 
288
                <userParam name="name" value="scan3"/>
 
289
        <userParam name="sdname" value="spectrumdescription3"/>
 
290
        <scanList count="2">
 
291
                <cvParam cvRef="MS" accession="MS:1000573" name="median of spectra"/>
 
292
                <userParam name="name" value="acquisition_list"/>
 
293
                <scan number="4711">
 
294
                        <cvParam cvRef="MS" accession="MS:1000016" name="scan start time" value="5.3" unitAccession="UO:0000010" unitName="second" unitCvRef="UO"/>
 
295
                        <cvParam cvRef="MS" accession="MS:1000512" name="filter string" value="+ c NSI Full ms [ 400.00-1800.00]"/>
 
296
                        <cvParam cvRef="MS" accession="MS:1000616" name="preset scan configuration" value="3"/>
 
297
                        <userParam name="name" value="acquisition1"/>
 
298
                </scan>
 
299
                <scan number="4712">
 
300
                        <userParam name="name" value="acquisition2"/>
 
301
                </scan>
 
302
        </scanList>
 
303
        <binaryDataArrayList count="2">
 
304
          <binaryDataArray encodedLength="160" dataProcessingRef="XcaliburProcessing">
 
305
            <cvParam cvRef="MS" accession="MS:1000523" name="64-bit float" value=""/>
 
306
            <cvParam cvRef="MS" accession="MS:1000576" name="no compression" value=""/>
 
307
            <cvParam cvRef="MS" accession="MS:1000514" name="m/z array" unitAccession="MS:1000040" unitName="m/z" unitCvRef="MS"/>
 
308
            <binary>AAAAAAAAAAAAAAAAAADwPwAAAAAAAABAAAAAAAAACEAAAAAAAAAQQAAAAAAAABRAAAAAAAAAGEAAAAAAAAAcQAAAAAAAACBAAAAAAAAAIkAAAAAAAAAkQAAAAAAAACZAAAAAAAAAKEAAAAAAAAAqQAAAAAAAACxA</binary>
 
309
          </binaryDataArray>
 
310
          <binaryDataArray encodedLength="160" dataProcessingRef="XcaliburProcessing">
 
311
            <cvParam cvRef="MS" accession="MS:1000523" name="64-bit float" value=""/>
 
312
            <cvParam cvRef="MS" accession="MS:1000576" name="no compression" value=""/>
 
313
            <cvParam cvRef="MS" accession="MS:1000515" name="intensity array" value="" unitAccession="MS:1000131" unitName="number of counts" unitCvRef="MS"/>
 
314
            <binary>AAAAAAAALkAAAAAAAAAsQAAAAAAAACpAAAAAAAAAKEAAAAAAAAAmQAAAAAAAACRAAAAAAAAAIkAAAAAAAAAgQAAAAAAAABxAAAAAAAAAGEAAAAAAAAAUQAAAAAAAABBAAAAAAAAACEAAAAAAAAAAQAAAAAAAAPA/</binary>
 
315
          </binaryDataArray>
 
316
        </binaryDataArrayList>
 
317
      </spectrum>
 
318
 
 
319
      <spectrum index="3" id="21" defaultArrayLength="0">
 
320
        <cvParam cvRef="MS" accession="MS:1000580" name="MSn spectrum" value=""/>
 
321
        <cvParam cvRef="MS" accession="MS:1000128" name="profile spectrum" value=""/>
 
322
        <cvParam cvRef="MS" accession="MS:1000511" name="ms level" value="1"/>
 
323
        <userParam name="name" value="spectrum4"/>
 
324
        <scanList count="1">
 
325
                                        <cvParam cvRef="MS" accession="MS:1000795" name="no combination"/>
 
326
                <scan number="0">
 
327
                                <cvParam cvRef="MS" accession="MS:1000016" name="scan start time" value="5.4" unitAccession="UO:0000010" unitName="second" unitCvRef="UO"/>
 
328
                      </scan>
 
329
                    </scanList>
 
330
      </spectrum>
 
331
      
 
332
      
 
333
    </spectrumList>
 
334
 
 
335
  </run>
 
336
</mzML>