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Viewing changes to source/TEST/data/IdXMLFile_whole.idXML

  • Committer: Package Import Robot
  • Author(s): Filippo Rusconi
  • Date: 2012-11-12 15:58:12 UTC
  • Revision ID: package-import@ubuntu.com-20121112155812-vr15wtg9b50cuesg
Tags: upstream-1.9.0
Import upstream version 1.9.0

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source/TEST/data/IdXMLFile_whole.idXML
 
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<?xml version="1.0" encoding="UTF-8"?>
 
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<?xml-stylesheet type="text/xsl" href="file:////OpenMS/share/OpenMS/XSL/IdXML.xsl"?>
 
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<IdXML version="1.2" id="LSID1234" xsi:noNamespaceSchemaLocation="http://open-ms.sourceforge.net/schemas/IdXML_1_2.xsd" xmlns:xsi="http://www.w3.org/2001/XMLSchema-instance">
 
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        <SearchParameters id="SP_0" db="MSDB" db_version="1.0" taxonomy="" mass_type="average" charges="+1, +2" enzyme="trypsin" missed_cleavages="0" precursor_peak_tolerance="1" peak_mass_tolerance="0.3" >
 
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        </SearchParameters>
 
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        <SearchParameters id="SP_1" db="MSDB" db_version="1.1" taxonomy="" mass_type="monoisotopic" charges="+1, +2, +3" enzyme="unknown_enzyme" missed_cleavages="0" precursor_peak_tolerance="1" peak_mass_tolerance="0.3" >
 
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                <FixedModification name="Fixed" />
 
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                <FixedModification name="Fixed2" />
 
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                <VariableModification name="Variable" />
 
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                <VariableModification name="Variable2" />
 
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        </SearchParameters>
 
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        <IdentificationRun date="2006-01-12T12:13:14" search_engine="Mascot" search_engine_version="2.1.0" search_parameters_ref="SP_0" >
 
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                <ProteinIdentification score_type="MOWSE" higher_score_better="true" significance_threshold="0" >
 
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                        <ProteinHit id="PH_0" accession="PROT1" score="34.4" sequence="ABCDEFG" >
 
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                                <UserParam type="string" name="name" value="ProteinHit"/>
 
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                        </ProteinHit>
 
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                        <ProteinHit id="PH_1" accession="PROT2" score="24.4" sequence="ABCDEFG" >
 
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                        </ProteinHit>
 
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                        <UserParam type="string" name="name" value="ProteinIdentification"/>
 
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                        <UserParam type="string" name="protein_group_0" value="0.88,PH_0,PH_1"/>
 
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                        <UserParam type="string" name="indistinguishable_proteins_0" value="0,PH_0,PH_1"/>
 
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                </ProteinIdentification>
 
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                <PeptideIdentification score_type="MOWSE" higher_score_better="false" significance_threshold="0" MZ="675.9" RT="1234.5" spectrum_reference="17" >
 
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                        <PeptideHit score="0.9" sequence="PEP1" charge="1" aa_before="A" aa_after="B" protein_refs="PH_0 PH_1" >
 
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                                <UserParam type="string" name="name" value="PeptideHit"/>
 
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                        </PeptideHit>
 
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                        <PeptideHit score="1.4" sequence="PEP2" charge="1" >
 
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                        </PeptideHit>
 
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                        <UserParam type="string" name="name" value="PeptideIdentification"/>
 
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                </PeptideIdentification>
 
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                <PeptideIdentification score_type="MOWSE" higher_score_better="true" significance_threshold="0" >
 
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                        <PeptideHit score="44.4" sequence="PEP3" charge="2" >
 
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                        </PeptideHit>
 
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                        <PeptideHit score="33.3" sequence="PEP4" charge="2" >
 
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                        </PeptideHit>
 
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                </PeptideIdentification>
 
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        </IdentificationRun>
 
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        <IdentificationRun date="2007-01-12T12:13:14" search_engine="Mascot"  search_engine_version="2.1.1" search_parameters_ref="SP_1" >
 
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                <ProteinIdentification score_type="MOWSE" higher_score_better="true" significance_threshold="0" >
 
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                        <ProteinHit id="PH_2" accession="PROT3" score="100.0" sequence="" >
 
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                        </ProteinHit>
 
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                </ProteinIdentification>
 
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                <PeptideIdentification score_type="MOWSE" higher_score_better="true" significance_threshold="0" >
 
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                        <PeptideHit score="1.4" sequence="PEP5" charge="1" protein_refs="PH_2" >
 
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                        </PeptideHit>
 
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                </PeptideIdentification>
 
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        </IdentificationRun>
 
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</IdXML>