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Viewing changes to source/VISUAL/DIALOGS/TOPPASToolConfigDialog.C

  • Committer: Package Import Robot
  • Author(s): Filippo Rusconi
  • Date: 2012-11-12 15:58:12 UTC
  • Revision ID: package-import@ubuntu.com-20121112155812-vr15wtg9b50cuesg
Tags: upstream-1.9.0
Import upstream version 1.9.0

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source/VISUAL/DIALOGS/TOPPASToolConfigDialog.C
 
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// -*- mode: C++; tab-width: 2; -*-
 
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// vi: set ts=2:
 
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//
 
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// --------------------------------------------------------------------------
 
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//                   OpenMS Mass Spectrometry Framework 
 
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// --------------------------------------------------------------------------
 
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//  Copyright (C) 2003-2011 -- Oliver Kohlbacher, Knut Reinert
 
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//
 
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//  This library is free software; you can redistribute it and/or
 
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//  modify it under the terms of the GNU Lesser General Public
 
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//  License as published by the Free Software Foundation; either
 
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//  version 2.1 of the License, or (at your option) any later version.
 
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//
 
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//  This library is distributed in the hope that it will be useful,
 
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//  but WITHOUT ANY WARRANTY; without even the implied warranty of
 
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//  MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE.  See the GNU
 
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//  Lesser General Public License for more details.
 
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//
 
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//  You should have received a copy of the GNU Lesser General Public
 
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//  License along with this library; if not, write to the Free Software
 
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//  Foundation, Inc., 59 Temple Place, Suite 330, Boston, MA  02111-1307  USA
 
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//
 
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// --------------------------------------------------------------------------
 
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// $Maintainer: Johannes Junker $
 
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// $Authors: Johannes Junker $
 
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// --------------------------------------------------------------------------
 
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// OpenMS includes
 
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#include <OpenMS/VISUAL/DIALOGS/TOPPASToolConfigDialog.h>
 
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#include <OpenMS/VISUAL/ParamEditor.h>
 
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#include <OpenMS/APPLICATIONS/TOPPBase.h>
 
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#include <OpenMS/SYSTEM/File.h>
 
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#include <QtCore/QStringList>
 
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#include <QtGui/QPushButton>
 
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#include <QtGui/QHBoxLayout>
 
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#include <QtGui/QGridLayout>
 
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#include <QtGui/QLabel>
 
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#include <QtGui/QMessageBox>
 
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#include <QtGui/QRadioButton>
 
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#include <QtGui/QFileDialog>
 
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#include <QtGui/QCheckBox>
 
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using namespace std;
 
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namespace OpenMS
 
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{
 
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        TOPPASToolConfigDialog::TOPPASToolConfigDialog( QWidget * parent, Param& param, String default_dir, String tool_name, String tool_type, QVector<String> hidden_entries)
 
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                : QDialog(parent),
 
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                        param_(&param),
 
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                        default_dir_(default_dir),
 
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                        tool_name_(tool_name),
 
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                        tool_type_(tool_type),
 
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                        hidden_entries_(hidden_entries)
 
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        {
 
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    QGridLayout *main_grid = new QGridLayout(this);
 
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                //Add advanced mode check box           
 
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    editor_ = new ParamEditor(this);
 
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                main_grid->addWidget(editor_,0,0,1,1);          
 
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                QHBoxLayout* hbox = new QHBoxLayout;
 
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    QPushButton* load_button = new QPushButton(tr("&Load"));
 
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                connect(load_button,SIGNAL(clicked()),this,SLOT(loadINI_()));
 
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                hbox->addWidget(load_button);
 
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    QPushButton* store_button = new QPushButton(tr("&Store"));
 
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                connect(store_button,SIGNAL(clicked()),this,SLOT(storeINI_()));
 
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                hbox->addWidget(store_button);
 
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                hbox->addStretch();
 
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    // cancel button
 
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    QPushButton* cancel_button = new QPushButton(tr("&Cancel"));
 
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    connect(cancel_button,SIGNAL(clicked()),this,SLOT(reject()));
 
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    hbox->addWidget(cancel_button);
 
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    // ok button
 
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    QPushButton* ok_button_ = new QPushButton(tr("&Ok"));
 
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                connect(ok_button_, SIGNAL(clicked()),this,SLOT(ok_()));
 
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                hbox->addWidget(ok_button_);
 
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                main_grid->addLayout(hbox,1,0,1,1);
 
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                setLayout(main_grid);
 
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                editor_->load(*param_);
 
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                String str;
 
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                editor_->setFocus(Qt::MouseFocusReason);
 
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    setWindowTitle(tool_name.toQString() + " " + tr("configuration"));
 
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        }
 
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        TOPPASToolConfigDialog::~TOPPASToolConfigDialog()
 
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        {
 
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        }
 
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        void TOPPASToolConfigDialog::ok_()
 
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        {
 
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                editor_->store();
 
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                accept();
 
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        }
 
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        void TOPPASToolConfigDialog::loadINI_()
 
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        {
 
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                QString string;
 
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                filename_=QFileDialog::getOpenFileName(this,tr("Open ini file"),default_dir_.c_str(),tr("ini files (*.ini);; all files (*.*)"));
 
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                //not file selected
 
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                if(filename_.isEmpty())
 
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                {
 
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                        return;
 
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                }
 
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                if(!arg_param_.empty())
 
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                {
 
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                        arg_param_.clear();
 
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                        param_->clear();
 
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                        editor_->clear();
 
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                }
 
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                try
 
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                {
 
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                        arg_param_.load(filename_.toStdString());
 
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                }
 
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                catch(Exception::BaseException& e)
 
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                {
 
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                        QMessageBox::critical(this,"Error",(String("Error loading INI file: ")+e.getMessage()).c_str());
 
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                        arg_param_.clear();
 
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                        return;
 
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                }
 
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                //Extract the required parameters
 
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                *param_=arg_param_.copy(tool_name_ + ":1:", true);
 
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                //param_->remove("log");
 
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                //param_->remove("no_progress");
 
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                //param_->remove("debug");
 
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                //remove parameters already explained by edges and the "type" parameter
 
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                foreach (const String& name, hidden_entries_)
 
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                {
 
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                        param_->remove(name);
 
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                }
 
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                //load data into editor
 
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                editor_->load(*param_);
 
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        }
 
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        void TOPPASToolConfigDialog::storeINI_()
 
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        {
 
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                //nothing to save
 
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                if (param_->empty()) return;
 
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                filename_=QFileDialog::getSaveFileName(this,tr("Save ini file"),default_dir_.c_str(),tr("ini files (*.ini)"));
 
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                //not file selected
 
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                if(filename_.isEmpty())
 
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                {
 
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                        return;
 
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                }
 
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                if(!filename_.endsWith(".ini")) filename_.append(".ini");
 
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                editor_->store();
 
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                arg_param_.insert(tool_name_ + ":1:", *param_);
 
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                try
 
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                {
 
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                        QString tmp_ini_file = File::getTempDirectory().toQString() + QDir::separator() + "TOPPAS_" + tool_name_.toQString() + "_";
 
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                        if (tool_type_ != "")
 
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                        {
 
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                                tmp_ini_file += tool_type_.toQString() + "_";
 
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                        }
 
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                        tmp_ini_file += File::getUniqueName().toQString() + "_tmp.ini";
 
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                        //store current parameters
 
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                        arg_param_.store(tmp_ini_file.toStdString());
 
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                        //restore other parameters that might be missing
 
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                        String call = String("\"") + File::getExecutablePath() + tool_name_ + "\"" + " -write_ini " + String(filename_) + " -ini " + String(tmp_ini_file);
 
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                        if (tool_type_ != "")
 
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                        {
 
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                                call += " -type " + tool_type_;
 
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                        }
 
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                        if (system(call.c_str()) != 0)
 
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                        {
 
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                                QMessageBox::critical(0, "Error", (String("Could not execute '") + call + "'!\n\nMake sure the TOPP tools are present in '" + File::getExecutablePath() + "', that you have permission to write to the temporary file path, and that there is space left in the temporary file path.").c_str());
 
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                                return;
 
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                        }
 
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                }
 
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                catch(Exception::BaseException& e)
 
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                {
 
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                        QMessageBox::critical(this,"Error",(String("Error storing INI file: ")+e.getMessage()).c_str());
 
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                        return;
 
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                }
 
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        }
 
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}
 
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