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  • Committer: Package Import Robot
  • Author(s): Filippo Rusconi
  • Date: 2012-11-12 15:58:12 UTC
  • Revision ID: package-import@ubuntu.com-20121112155812-vr15wtg9b50cuesg
Tags: upstream-1.9.0
Import upstream version 1.9.0

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source/TEST/PepNovoInfile_test_template2.txt
 
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# Fixed PTMs
 
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#AA  offset      type    locations  symbol  PTM name
 
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K   10.3   FIXED   ALL   K+10   PTM_0
 
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R   10.3   FIXED   ALL   R+10   PTM_0
 
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L   10.3   FIXED   ALL   L+10   PTM_0
 
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N   10.3   FIXED   ALL   N+10   PTM_0
 
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H   10.3   FIXED   ALL   H+10   PTM_0
 
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# Optional PTMs
 
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C   14.01565   OPTIONAL   ALL   C+14   Methylation
 
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H   14.01565   OPTIONAL   ALL   H+14   Methylation
 
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K   14.01565   OPTIONAL   ALL   K+14   Methylation
 
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N   14.01565   OPTIONAL   ALL   N+14   Methylation
 
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Q   14.01565   OPTIONAL   ALL   Q+14   Methylation
 
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R   14.01565   OPTIONAL   ALL   R+14   Methylation
 
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I   14.01565   OPTIONAL   ALL   I+14   Methylation
 
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L   14.01565   OPTIONAL   ALL   L+14   Methylation
 
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D   14.01565   OPTIONAL   ALL   D+14   Methylation
 
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E   14.01565   OPTIONAL   ALL   E+14   Methylation
 
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S   14.01565   OPTIONAL   ALL   S+14   Methylation
 
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T   14.01565   OPTIONAL   ALL   T+14   Methylation
 
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C   16   OPTIONAL   ALL   C+16   PTM_2
 
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S   79.96635   OPTIONAL   ALL   S+80   Phosphorylation
 
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T   79.96635   OPTIONAL   ALL   T+80   Phosphorylation
 
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Y   79.96635   OPTIONAL   ALL   Y+80   Phosphorylation
 
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D   79.96635   OPTIONAL   ALL   D+80   Phosphorylation
 
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H   79.96635   OPTIONAL   ALL   H+80   Phosphorylation
 
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C   79.96635   OPTIONAL   ALL   C+80   Phosphorylation
 
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R   79.96635   OPTIONAL   ALL   R+80   Phosphorylation
 
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# Terminal PTMs
 
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C_TERM   -16   OPT   C_TERM   §-16   PTM_5
 
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N_TERM   43.00582   OPTIONAL   N_TERM   ^+43   Carbamylation
 
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N_TERM   -16   OPTIONAL   N_TERM   ^-16   PTM_6