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Viewing changes to source/TEST/TOPP/FileMerger_3_output.mzML

  • Committer: Package Import Robot
  • Author(s): Filippo Rusconi
  • Date: 2012-11-12 15:58:12 UTC
  • Revision ID: package-import@ubuntu.com-20121112155812-vr15wtg9b50cuesg
Tags: upstream-1.9.0
Import upstream version 1.9.0

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source/TEST/TOPP/FileMerger_3_output.mzML
 
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<?xml version="1.0" encoding="ISO-8859-1"?>
 
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<mzML xmlns="http://psi.hupo.org/ms/mzml" xmlns:xsi="http://www.w3.org/2001/XMLSchema-instance" xsi:schemaLocation="http://psi.hupo.org/ms/mzml http://psidev.info/files/ms/mzML/xsd/mzML1.1.0.xsd" accession="" version="1.1.0">
 
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        <cvList count="2">
 
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                <cv id="MS" fullName="Proteomics Standards Initiative Mass Spectrometry Ontology" URI="http://psidev.cvs.sourceforge.net/*checkout*/psidev/psi/psi-ms/mzML/controlledVocabulary/psi-ms.obo"/>
 
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                <cv id="UO" fullName="Unit Ontology" URI="http://obo.cvs.sourceforge.net/obo/obo/ontology/phenotype/unit.obo"/>
 
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        </cvList>
 
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        <fileDescription>
 
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                <fileContent>
 
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                        <cvParam cvRef="MS" accession="MS:1000294" name="mass spectrum" />
 
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                </fileContent>
 
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        </fileDescription>
 
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        <sampleList count="1">
 
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                <sample id="sa_0" name="">
 
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                        <cvParam cvRef="MS" accession="MS:1000004" name="sample mass" value="0"  unitAccession="UO:0000021" unitName="gram" unitCvRef="UO" />
 
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                        <cvParam cvRef="MS" accession="MS:1000005" name="sample volume" value="0" unitAccession="UO:0000098" unitName="milliliter" unitCvRef="UO" />
 
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                        <cvParam cvRef="MS" accession="MS:1000006" name="sample concentration" value="0" unitAccession="UO:0000175" unitName="gram per liter" unitCvRef="UO" />
 
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                </sample>
 
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        </sampleList>
 
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        <softwareList count="3">
 
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                <software id="so_in_0" version="" >
 
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                        <cvParam cvRef="MS" accession="MS:1000799" name="custom unreleased software tool" value="" />
 
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                </software>
 
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                <software id="so_default" version="" >
 
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                        <cvParam cvRef="MS" accession="MS:1000799" name="custom unreleased software tool" value="" />
 
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                </software>
 
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                <software id="so_dp_sp_0_pm_0" version="version_string" >
 
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                        <cvParam cvRef="MS" accession="MS:1000758" name="FileMerger" />
 
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                </software>
 
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        </softwareList>
 
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        <instrumentConfigurationList count="1">
 
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                <instrumentConfiguration id="ic_0">
 
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                        <cvParam cvRef="MS" accession="MS:1000031" name="instrument model" />
 
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                        <softwareRef ref="so_in_0" />
 
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                </instrumentConfiguration>
 
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        </instrumentConfigurationList>
 
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        <dataProcessingList count="1">
 
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                <dataProcessing id="dp_sp_0">
 
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                        <processingMethod order="0" softwareRef="so_dp_sp_0_pm_0">
 
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                                <cvParam cvRef="MS" accession="MS:1000530" name="file format conversion" />
 
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                                <cvParam cvRef="MS" accession="MS:1000747" name="completion time" value="1999-12-31+23:59" />
 
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                                <userParam name="parameter: mode" type="xsd:string" value="test_mode"/>
 
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                        </processingMethod>
 
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                </dataProcessing>
 
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        </dataProcessingList>
 
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        <run id="ru_0" defaultInstrumentConfigurationRef="ic_0" sampleRef="sa_0">
 
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                <spectrumList count="2" defaultDataProcessingRef="dp_sp_0">
 
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                        <spectrum id="spectrum=0" index="0" defaultArrayLength="3" dataProcessingRef="dp_sp_0">
 
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                                <cvParam cvRef="MS" accession="MS:1000525" name="spectrum representation" />
 
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                                <cvParam cvRef="MS" accession="MS:1000511" name="ms level" value="1" />
 
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                                <cvParam cvRef="MS" accession="MS:1000294" name="mass spectrum" />
 
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                                <scanList count="1">
 
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                                        <cvParam cvRef="MS" accession="MS:1000795" name="no combination" />
 
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                                        <scan>
 
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                                                <cvParam cvRef="MS" accession="MS:1000016" name="scan start time" value="1" unitAccession="UO:0000010" unitName="second" unitCvRef="UO" />
 
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                                        </scan>
 
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                                </scanList>
 
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      <precursorList count="1">
 
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          <precursor>
 
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            <isolationWindow>
 
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              <cvParam cvRef="MS" accession="MS:1000827" name="isolation window target m/z" value="1500" unitAccession="MS:1000040" unitName="m/z" unitCvRef="MS" />
 
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              <cvParam cvRef="MS" accession="MS:1000828" name="isolation window lower offset" value="0" unitAccession="MS:1000040" unitName="m/z" unitCvRef="MS" />
 
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              <cvParam cvRef="MS" accession="MS:1000829" name="isolation window upper offset" value="0" unitAccession="MS:1000040" unitName="m/z" unitCvRef="MS" />
 
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            </isolationWindow>
 
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            <selectedIonList count="1">
 
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              <selectedIon>
 
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                <cvParam cvRef="MS" accession="MS:1000744" name="selected ion m/z" value="1500" unitAccession="MS:1000040" unitName="m/z" unitCvRef="MS" />
 
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                <cvParam cvRef="MS" accession="MS:1000041" name="charge state" value="1" />
 
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                <cvParam cvRef="MS" accession="MS:1000042" name="peak intensity" value="0" unitAccession="MS:1000132" unitName="percent of base peak" unitCvRef="MS" />
 
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              </selectedIon>
 
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            </selectedIonList>
 
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            <activation>
 
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              <cvParam cvRef="MS" accession="MS:1000509" name="activation energy" value="0" unitAccession="UO:0000266" unitName="electronvolt" unitCvRef="UO" />
 
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            <cvParam cvRef="MS" accession="MS:1000044" name="dissociation method" />
 
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          </activation>
 
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        </precursor>
 
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      </precursorList>
 
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                                <binaryDataArrayList count="2">
 
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                                        <binaryDataArray encodedLength="32">
 
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                                                <cvParam cvRef="MS" accession="MS:1000514" name="m/z array" unitAccession="MS:1000040" unitName="m/z" unitCvRef="MS" />
 
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                                                <cvParam cvRef="MS" accession="MS:1000523" name="64-bit float" />
 
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                                                <cvParam cvRef="MS" accession="MS:1000576" name="no compression" />
 
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                                                <binary>AAAAAAAAaUAAAAAAAMByQAAAAAAAAHlA</binary>
 
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                                        </binaryDataArray>
 
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                                        <binaryDataArray encodedLength="16">
 
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                                                <cvParam cvRef="MS" accession="MS:1000515" name="intensity array" unitAccession="MS:1000131" unitName="number of counts" unitCvRef="MS"/>
 
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                                                <cvParam cvRef="MS" accession="MS:1000521" name="32-bit float" />
 
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                                                <cvParam cvRef="MS" accession="MS:1000576" name="no compression" />
 
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                                                <binary>AAAwQQAAQEEAAFBB</binary>
 
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                                        </binaryDataArray>
 
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                                </binaryDataArrayList>
 
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                        </spectrum>
 
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                        <spectrum id="spectrum=1" index="1" defaultArrayLength="3">
 
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                                <cvParam cvRef="MS" accession="MS:1000525" name="spectrum representation" />
 
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                                <cvParam cvRef="MS" accession="MS:1000511" name="ms level" value="1" />
 
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                                <cvParam cvRef="MS" accession="MS:1000294" name="mass spectrum" />
 
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                                <scanList count="1">
 
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                                        <cvParam cvRef="MS" accession="MS:1000795" name="no combination" />
 
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                                        <scan>
 
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                                                <cvParam cvRef="MS" accession="MS:1000016" name="scan start time" value="2" unitAccession="UO:0000010" unitName="second" unitCvRef="UO" />
 
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                                        </scan>
 
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                                </scanList>
 
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      <precursorList count="1">
 
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          <precursor>
 
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            <isolationWindow>
 
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              <cvParam cvRef="MS" accession="MS:1000827" name="isolation window target m/z" value="500.666666666667" unitAccession="MS:1000040" unitName="m/z" unitCvRef="MS" />
 
106
              <cvParam cvRef="MS" accession="MS:1000828" name="isolation window lower offset" value="0" unitAccession="MS:1000040" unitName="m/z" unitCvRef="MS" />
 
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              <cvParam cvRef="MS" accession="MS:1000829" name="isolation window upper offset" value="0" unitAccession="MS:1000040" unitName="m/z" unitCvRef="MS" />
 
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            </isolationWindow>
 
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            <selectedIonList count="1">
 
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              <selectedIon>
 
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                <cvParam cvRef="MS" accession="MS:1000744" name="selected ion m/z" value="500.666666666667" unitAccession="MS:1000040" unitName="m/z" unitCvRef="MS" />
 
112
                <cvParam cvRef="MS" accession="MS:1000041" name="charge state" value="3" />
 
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                <cvParam cvRef="MS" accession="MS:1000042" name="peak intensity" value="0" unitAccession="MS:1000132" unitName="percent of base peak" unitCvRef="MS" />
 
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              </selectedIon>
 
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            </selectedIonList>
 
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            <activation>
 
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              <cvParam cvRef="MS" accession="MS:1000509" name="activation energy" value="0" unitAccession="UO:0000266" unitName="electronvolt" unitCvRef="UO" />
 
118
            <cvParam cvRef="MS" accession="MS:1000044" name="dissociation method" />
 
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          </activation>
 
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        </precursor>
 
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      </precursorList>
 
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                                <binaryDataArrayList count="2">
 
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                                        <binaryDataArray encodedLength="32">
 
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                                                <cvParam cvRef="MS" accession="MS:1000514" name="m/z array" unitAccession="MS:1000040" unitName="m/z" unitCvRef="MS" />
 
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                                                <cvParam cvRef="MS" accession="MS:1000523" name="64-bit float" />
 
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                                                <cvParam cvRef="MS" accession="MS:1000576" name="no compression" />
 
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                                                <binary>AAAAAADAgkAAAAAAAACJQAAAAAAAQI9A</binary>
 
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                                        </binaryDataArray>
 
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                                        <binaryDataArray encodedLength="16">
 
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                                                <cvParam cvRef="MS" accession="MS:1000515" name="intensity array" unitAccession="MS:1000131" unitName="number of counts" unitCvRef="MS"/>
 
131
                                                <cvParam cvRef="MS" accession="MS:1000521" name="32-bit float" />
 
132
                                                <cvParam cvRef="MS" accession="MS:1000576" name="no compression" />
 
133
                                                <binary>AACoQQAAsEEAALhB</binary>
 
134
                                        </binaryDataArray>
 
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                                </binaryDataArrayList>
 
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                        </spectrum>
 
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                </spectrumList>
 
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        </run>
 
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</mzML>
 
 
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