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  • Committer: Bazaar Package Importer
  • Author(s): Barry deFreese
  • Date: 2006-07-19 23:28:07 UTC
  • mfrom: (1.1.5 upstream)
  • Revision ID: james.westby@ubuntu.com-20060719232807-et3cdmcjgmnyleyx
Tags: 6.1.20060507-3ubuntu1
Re-merge with Debian

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demo/copymat.c
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static char const rcsid[] = "$Id: copymat.c,v 6.42 2005/05/20 18:57:51 camacho Exp $";
 
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static char const rcsid[] = "$Id: copymat.c,v 6.44 2005/12/22 14:22:19 papadopo Exp $";
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/*
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* ===========================================================================
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score matrices output by makematrices into a single byte-encoded file.
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$Log: copymat.c,v $
 
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Revision 6.44  2005/12/22 14:22:19  papadopo
 
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change signature of BLAST_FillLookupTableOptions
 
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Revision 6.43  2005/12/20 15:36:39  papadopo
 
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change name of structure field
 
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Revision 6.42  2005/05/20 18:57:51  camacho
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Update to use new signature to BLAST_FillLookupTableOptions
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    Int4 offset_diff;
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    len = lookup->backbone_size;
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    offset_diff = lookup->wordsize - 1;
 
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    offset_diff = lookup->word_length - 1;
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    /* Walk through table, copying info into mod_lt[] */
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    for(index = 0; index < len; index++) {
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    RPSPsiMatrixAttach(sbp, posMatrix);
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    LookupTableOptionsNew(eBlastTypeBlastp, &lookup_options);
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    BLAST_FillLookupTableOptions(lookup_options, eBlastTypePsiBlast, FALSE, 
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        (Int4) (myargs[3].floatvalue*scalingFactor), myargs[4].intvalue, FALSE);
 
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        (Int4) (myargs[3].floatvalue*scalingFactor), myargs[4].intvalue);
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    BlastSeqLocNew(&lookup_segment, 0, all_length);