~ubuntu-branches/ubuntu/precise/bioperl/precise

« back to all changes in this revision

Viewing changes to Bio/DB/SeqFeature.pm

  • Committer: Bazaar Package Importer
  • Author(s): Ilya Barygin
  • Date: 2010-01-27 22:48:22 UTC
  • mfrom: (3.1.4 squeeze)
  • Revision ID: james.westby@ubuntu.com-20100127224822-ebot4qbrjxcv38au
Tags: 1.6.1-1ubuntu1
* Merge from Debian testing, remaining changes:
  - disable tests, they produce a FTBFS trying to access the network 
    during run.

Show diffs side-by-side

added added

removed removed

Lines of Context:
1
1
package Bio::DB::SeqFeature;
2
2
 
3
 
# $Id: SeqFeature.pm 14807 2008-08-17 03:32:19Z jason $
 
3
# $Id: SeqFeature.pm 16091 2009-09-15 22:11:15Z cjfields $
4
4
 
5
5
=head1 NAME
6
6
 
34
34
The Bio::DB::SeqFeature object is the default SeqFeature class stored
35
35
in Bio::DB::SeqFeature databases. It implements both the
36
36
Bio::DB::SeqFeature::NormalizedFeatureI and
37
 
Bio::DB::SeqFeature::TableFeatureI interfaces, which means that its
 
37
Bio::DB::SeqFeature::NormalizedTableFeatureI interfaces, which means that its
38
38
subfeatures, if any, are stored in the database in a normalized
39
39
fashion, and that the parent/child hierarchy of features and
40
40
subfeatures are also stored in the database as set of tuples. This
387
387
# for Bio::LocationI compatibility
388
388
sub location_type { return 'EXACT' }
389
389
 
 
390
# for Bio::DB::GFF compatibility
 
391
 
 
392
sub feature_id {shift->primary_id}
 
393
 
390
394
1;
391
395
 
392
396