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  • Committer: Bazaar Package Importer
  • Author(s): Ilya Barygin
  • Date: 2010-01-27 22:48:22 UTC
  • mfrom: (3.1.4 squeeze)
  • Revision ID: james.westby@ubuntu.com-20100127224822-ebot4qbrjxcv38au
Tags: 1.6.1-1ubuntu1
* Merge from Debian testing, remaining changes:
  - disable tests, they produce a FTBFS trying to access the network 
    during run.

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MANIFEST
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Bio/DB/SeqFeature/Store.pm
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Bio/DB/SeqFeature/Store/bdb.pm
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Bio/DB/SeqFeature/Store/berkeleydb.pm
 
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Bio/DB/SeqFeature/Store/berkeleydb3.pm
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Bio/DB/SeqFeature/Store/DBI/Iterator.pm
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Bio/DB/SeqFeature/Store/DBI/mysql.pm
 
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Bio/DB/SeqFeature/Store/DBI/Pg.pm
 
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Bio/DB/SeqFeature/Store/DBI/SQLite.pm
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Bio/DB/SeqFeature/Store/FeatureFileLoader.pm
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Bio/DB/SeqFeature/Store/GFF2Loader.pm
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Bio/DB/SeqFeature/Store/GFF3Loader.pm
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Bio/Search/Result/WABAResult.pm
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Bio/Search/SearchUtils.pm
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Bio/Search/StatisticsI.pm
 
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Bio/Search/Tiling/MapTileUtils.pm
 
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Bio/Search/Tiling/MapTiling.pm
 
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Bio/Search/Tiling/TilingI.pm
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Bio/SearchDist.pm
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Bio/SearchIO.pm
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Bio/SearchIO/axt.pm
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Bio/SearchIO/exonerate.pm
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Bio/SearchIO/fasta.pm
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Bio/SearchIO/FastHitEventBuilder.pm
 
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Bio/SearchIO/gmap_f9.pm
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Bio/SearchIO/hmmer.pm
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Bio/SearchIO/hmmer_pull.pm
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Bio/SearchIO/infernal.pm
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Bio/Tools/EUtilities/Summary.pm
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Bio/Tools/EUtilities/Summary/DocSum.pm
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Bio/Tools/EUtilities/Summary/Item.pm
 
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Bio/Tools/EUtilities/Summary/ItemContainerI.pm
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Bio/Tools/Fgenesh.pm
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Bio/Tools/FootPrinter.pm
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Bio/Tools/Gel.pm
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Bio/Tools/Glimmer.pm
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Bio/Tools/Grail.pm
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Bio/Tools/GuessSeqFormat.pm
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Bio/Tools/HMM.pm
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Bio/Tools/HMMER/Domain.pm
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Bio/Tools/HMMER/Results.pm
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Bio/Tools/HMMER/Set.pm
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Bio/Tools/Run/WrapperBase.pm
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Bio/Tools/Seg.pm
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Bio/Tools/SeqPattern.pm
 
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Bio/Tools/SeqPattern/Backtranslate.pm
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Bio/Tools/SeqStats.pm
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Bio/Tools/SeqWords.pm
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Bio/Tools/Sigcleave.pm
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Bio/Variation/SNP.pm
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Bio/Variation/VariantI.pm
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Bio/WebAgent.pm
 
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BioPerl.pm
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BUGS
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Build.PL
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Changes
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examples/tools/seq_pattern.pl
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examples/tools/standaloneblast.pl
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examples/tree/paup2phylip.pl
 
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ide/bioperl-mode/dist/bioperl-mode-xemacs.tar
 
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ide/bioperl-mode/dist/bioperl-mode-xemacs.tar.md5
 
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ide/bioperl-mode/dist/bioperl-mode.tar
 
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ide/bioperl-mode/dist/bioperl-mode.tar.md5
 
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ide/bioperl-mode/dist/package-me
 
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ide/bioperl-mode/dist/SKIP
 
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ide/bioperl-mode/etc/images/bpmode-tool-dis.xpm
 
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ide/bioperl-mode/etc/images/bpmode-tool.xpm
 
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ide/bioperl-mode/README
 
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ide/bioperl-mode/site-lisp/bioperl-init.el
 
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ide/bioperl-mode/site-lisp/bioperl-mode.el
 
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ide/bioperl-mode/site-lisp/bioperl-skel.el
 
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ide/bioperl-mode/site-lisp/pod.el
 
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ide/bioperl.komodo
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INSTALL
 
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INSTALL.SKIP
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INSTALL.WIN
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LICENSE
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maintenance/authors.pl
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maintenance/module_usage.pl
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maintenance/modules.pl
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maintenance/ncbi_blast_switches.pl
 
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maintenance/perltidy.conf
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maintenance/pod.pl
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maintenance/README
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maintenance/symlink_script.pl
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maintenance/version.pl
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MANIFEST                        This list of files
 
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MANIFEST.SKIP
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models/biblio.dia
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models/bio_liveseq_variation.dia
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models/bio_map.dia
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models/popgen.dia
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models/population_proposal.txt
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models/README
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PLATFORMS
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README
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scripts/biblio/biblio.PLS
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scripts/biblio/TAG
 
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scripts/Bio-DB-EUtilities/einfo.PLS
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scripts/Bio-DB-GFF/bulk_load_gff.PLS
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scripts/Bio-DB-GFF/fast_load_gff.PLS
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scripts/Bio-DB-GFF/genbank2gff.PLS
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scripts/Bio-SeqFeature-Store/bp_seqfeature_load.PLS
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scripts/das/README
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scripts/das/TAG
 
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scripts/DB-HIV/hivq.PLS
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scripts/DB/biofetch_genbank_proxy.PLS
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scripts/DB/bioflat_index.PLS
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scripts/DB/biogetseq.PLS
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scripts/utilities/pairwise_kaks.PLS
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scripts/utilities/README
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scripts/utilities/remote_blast.PLS
 
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scripts/utilities/revtrans-motif.PLS
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scripts/utilities/search2alnblocks.PLS
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scripts/utilities/search2BSML.PLS
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scripts/utilities/search2gff.PLS
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t/data/1A3I.pdb
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t/data/1ZZ19XR301R-Alignment.tblastn
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t/data/2008.blasttable
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t/data/503384.MEGABLAST.0
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t/data/bug2399.tblastn
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t/data/bug2453.maf
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t/data/bug2473.fasta
 
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t/data/bug2862.pmr
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t/data/c200-vs-yeast.BLASTN
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t/data/c200-vs-yeast.BLASTN.m8
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t/data/calm.swiss
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t/data/catalase-webblast.BLASTP
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t/data/cds-266.fas
 
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t/data/cds_sample.embl
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t/data/CG11099.fasaln
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t/data/CG2865.fasaln
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t/data/chad100.scf
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t/data/consed_project/phd_dir/ML4924F.phd.1
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t/data/consed_project/phd_dir/ML4947F.phd.1
 
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t/data/contig-by-hand.wublastp
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t/data/contigspectrumtest.asm
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t/data/crab.dat.cn
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t/data/crab.nj
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t/data/eutils/esummary2.xml
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t/data/example.hap
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t/data/exonerate.output.dontwork
 
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t/data/exonerate.output.works
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t/data/expected.blast.out
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t/data/factor7.embl
 
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t/data/rel9.swiss
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t/data/repeatmasker.fa.out
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t/data/ReseqChip_ExampleData.fasta
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t/data/ReseqChip_mtDNA_design_annotation_file_FINAL.xls
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t/data/ReseqChip_RefSeq.fasta
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