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BLASTP 2.0MP-WashU [12-Feb-2001] [linux-i686 01:36:08 31-Jan-2001]
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Copyright (C) 1996-2000 Washington University, Saint Louis, Missouri USA.
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Reference: Gish, W. (1996-2000) http://blast.wustl.edu
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Query= gi|1786183|gb|AAC73113.1| (AE000111) aspartokinase I, homoserine
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dehydrogenase I [Escherichia coli]
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4289 sequences; 1,358,990 total letters.
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Searching....10....20....30....40....50....60....70....80....90....100% done
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Sequences producing High-scoring Segment Pairs: Score P(N) N
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gb|AAC76922.1| (AE000468) aspartokinase II (contig by hand) 999 0.0e-00 1
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>gb|AAC76922.1| (AE000468) aspartokinase II (contig by hand)
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Score = 999 (999.9 bits), Expect = 0.0e-00, P = 0.0e-00
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Identities = 250/810 (31%), Positives = 413/810 (51%)
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Query: 5 KFGGTSVANAERFLRVADILESNARQGQVATVLSAPAKITNHLVAMIEKTISGQDALPNI 64
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KFGG+S+A+ + +LRVA I+ ++ + V+SA TN L+ ++ + + + + +
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Sbjct: 16 KFGGSSLADVKCYLRVAGIMAEYSQPDDMM-VVSAAGSTTNQLINWLKLSQTDRLSAHQV 74
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Query: 65 SDAERIF-AELLTGLAAAQPGFPLAQLKTFVDQEFAQIKHVLH-GISLLGQCPDSINAAL 122
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R + +L++GL A+ L + FV + ++ +L GI+ D++ A +
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Sbjct: 75 QQTLRRYQCDLISGLLPAEEADSL--ISAFVS-DLERLAALLDSGIN------DAVYAEV 125
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Query: 123 ICRGEKMSIAIMAGVLEARGHNVTVIDPVEKLLAVGHYLESTVDIAESTRRIAASRI--P 180
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+ GE S +M+ VL +G +D E L A + VD S + + P
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Sbjct: 126 VGHGEVWSARLMSAVLNQQGLPAAWLDAREFLRAE-RAAQPQVDEGLSYPLLQQLLVQHP 184
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Query: 181 ADHMVLMAGFTAGNEKGELVVLGRNGSDYSAAVLAACLRADCCEIWTDVDGVYTCDPRQV 240
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+V+ GF + N GE V+LGRNGSDYSA + A IW+DV GVY+ DPR+V
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Sbjct: 185 GKRLVV-TGFISRNNAGETVLLGRNGSDYSATQIGALAGVSRVTIWSDVAGVYSADPRKV 243
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Query: 241 PDARLLKSMSYQEAMELSYFGAKVLHPRTITPIAQFQIPCLIKNTGNPQAPGTLIGASRD 300
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DA LL + EA EL+ A VLH RT+ P++ +I ++ + P T I
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Sbjct: 244 KDACLLPLLRLDEASELARLAAPVLHARTLQPVSGSEIDLQLRCSYTPDQGSTRIERVLA 303
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Query: 301 EDELPVKGISNLNNMAMFSVSGPGMKGMVGMAARVFAAMSRARISVVLITQSSSEYSISF 360
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+ +++ +++ + P + + + RA++ + + + + F
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Sbjct: 304 SGT-GARIVTSHDDVCLIEFQVPASQDFKLAHKEIDQILKRAQVRPLAVGVHNDRQLLQF 362
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Query: 361 CVPQSDCVRAERAMQEEFYLELKEGLLEPLAVTERLAIISVVGDGMRTLRGIS 413
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C A + + E GL L + + LA++++VG G+ T +
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Sbjct: 363 CYTSEVADSALKILDEA-------GLPGELRLRQGLALVAMVGAGV-TRNPLH 407
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Query: 414 A-KFFAALARANINIVAIAQGSSERSISVVVNNDDATTGVRVTHQMLFNTDQVIEVFVIG 472
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+F+ L + Q S+ V+ + ++ HQ +F ++ I + + G
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Sbjct: 408 CHRFWQQLKGQPVEFTW--QSDDGISLVAVLRTGPTESLIQGLHQSVFRAEKRIGLVLFG 465
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Query: 473 VGGVGGALLEQLKRQQSWLKNKH-IDLRVCGVANSKALLTNVHGLN----LENWQEELAQ 527
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G +G LE R+QS L + + + GV +S+ L + GL+ L + +E +
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Sbjct: 466 KGNIGSRWLELFAREQSTLSARTGFEFVLAGVVDSRRSLLSYDGLDASRALAFFNDEAVE 525
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Query: 528 AKEPFNLGRLIRLVKEYHLLNPVIVDCTSSQAVADQYADFLREGFHVVTPNKKANTSSMD 587
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E L ++ + + V++D T+SQ +ADQY DF GFHV++ NK A S +
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Sbjct: 526 QDEE----SLFLWMRAHPYDDLVVLDVTASQQLADQYLDFASHGFHVISANKLAGASDSN 581
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Query: 588 YYHQLRYAAEKSRRKFLYDTNVGAGLPVIENLQNLLNAGDELMKFSGILSGSLSYIFGKL 647
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Y Q+ A EK+ R +LY+ VGAGLP+ +++L+++GD ++ SGI SG+LS++F +
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Sbjct: 582 KYRQIHDAFEKTGRHWLYNATVGAGLPINHTVRDLIDSGDTILSISGIFSGTLSWLFLQF 641
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Query: 648 DEGMSFSEATTLAREMGYTEPDPRDDLSGMDVARKLLILARETGRELELADIEIEPVLPA 707
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D + F+E A + G TEPDPRDDLSG DV RKL+ILARE G +E + +E ++PA
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Sbjct: 642 DGSVPFTELVDQAWQQGLTEPDPRDDLSGKDVMRKLVILAREAGYNIEPDQVRVESLVPA 701
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Query: 708 EFNAEGDVAAFMANLSQLDDLFAARVAKARDEGKVLRYVGNIDEDGVCRVKIAEVDGNDP 767
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G + F N +L++ R+ AR+ G VLRYV D +G RV + V + P
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Sbjct: 702 HCEG-GSIDHFFENGDELNEQMVQRLEAAREMGLVLRYVARFDANGKARVGVEAVREDHP 760
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Query: 768 LFKVKNGENALAFYSHYYQPLPLVLRGYGAGNDVTAAGVFADLLR 812
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L + +N A S +Y+ PLV+RG GAG DVTA + +D+ R
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Sbjct: 761 LASLLPCDNVFAIESRWYRDNPLVIRGPGAGRDVTAGAIQSDINR 805
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Query ----- As Used ----- ----- Computed ----
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Frame MatID Matrix name Lambda K H Lambda K H
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+0 0 BLOSUM62 0.319 0.136 0.384 same same same
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Q=9,R=2 0.244 0.0300 0.180 n/a n/a n/a
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Frame MatID Length Eff.Length E S W T X E2 S2
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+0 0 820 820 0.010 93 3 11 22 0.19 34
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Database: /home/jes12/db/ecoli.aa
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Posted: 2:52:35 PM EST Nov 18, 2001
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Created: 9:46:47 AM EST Nov 18, 2001
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# of letters in database: 1,358,990
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# of sequences in database: 4289
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# of database sequences satisfying E: 4
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No. of states in DFA: 573 (61 KB)
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Total size of DFA: 281 KB (1149 KB)
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Time to generate neighborhood: 0.00u 0.02s 0.02t Elapsed: 00:00:00
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No. of threads or processors used: 1
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Search cpu time: 1.58u 0.00s 1.58t Elapsed: 00:00:01
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Total cpu time: 1.59u 0.02s 1.61t Elapsed: 00:00:01
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Start: Thu Dec 6 11:09:14 2001 End: Thu Dec 6 11:09:15 2001
added
removed
t/data/contig-by-hand.wublastp
