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  • Committer: Package Import Robot
  • Author(s): Charles Plessy
  • Date: 2013-09-22 13:39:48 UTC
  • mfrom: (3.1.11 sid)
  • Revision ID: package-import@ubuntu.com-20130922133948-c6z62zegjyp7ztou
Tags: 1.6.922-1
http://bugs.debian.org/722910
* New upstream release.
* Replaces and Breaks grinder (<< 0.5.3-3~) because of overlaping contents.
  Closes: #722910
* Stop Replacing and Breaking bioperl ( << 1.6.9 ): not needed anymore. 

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Bio/Variation/IO/xml.pm
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    # create new parser object
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    my $twig_handlers = {'seqDiff' =>  \&_seqDiff };
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    my $t = new XML::Twig ( TwigHandlers => $twig_handlers,
 
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    my $t = XML::Twig->new ( TwigHandlers => $twig_handlers,
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                            KeepEncoding => 1 );
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    $t->parse($entry);
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    }
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    my $str;
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    my $output = IO::String->new($str);
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    my $w = new XML::Writer(OUTPUT => $output, DATA_MODE => 1, DATA_INDENT => 4 );
 
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    my $w = XML::Writer->new(OUTPUT => $output, DATA_MODE => 1, DATA_INDENT => 4 );
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    foreach my $h (@h) {
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        #