3
Pdel181_DNA2 ATG TCA CCA CAA ACA GAG ACT AAA ACA GGT GTT GGA TTC AAG GCT GGT GTT AAA GAT TAT AAA TTG ACT TAT TAT ACT CCT GAG TAT GAA ACC AAA GAT ACT GAT ATC TTG GCA GCA TTC CGA GTA ACT CCT CAA CCT GGA GTT CCG CCC GAG GAA GCA GGG GCC GCA GTA GCT GCT GAA TCT TCT ACT GGT ACA TGG ACA ACT GTG TGG ACC GAC GGG CTT ACC AGT CTT GAT CGT TAT AAG GGA CGA TGC TAC GAC ATC GAG CCC GTT GCT GGA GAA GAA AAT CAA TTT ATT GCT TAT GTA GCT TAC CCC TTA GAC CTT TTT GAA GAA GGT TCT GTT ACT AAC ATG TTT ACT TCC ATT GTG GGT AAT GTA TTT GGG TTC AAA GCC CTA CGC GCT CTA CGT CTG GAG GAT TTG CGA ATT CCT CCT GCT TAT GTT AAA ACT TTT CAA GGC CCA CCT CAT GGT ATC CAA GTT GAA AGA GAT AAA TTG AAC AAG TAT GGT CGC CCC CTA TTG GGC TGT ACT ATT AAA CCT AAA TTG GGG TTA TCC GCT AAG AAT TAC GGT AGA GCA GTT TAT GAA TGT CTA CGC GGT GGA CTT GAT TTT ACC AAA GAT GAT GAG AAC GTG AAC TCC CAA CCA TTT ATG CGT TGG AGA GAT CGT TTC TTA TTT TGT GCC GAA GCA CTT TAT AAA GCA CAG GCT GAA ACC GGT GAA ATC AAA GGG CAT TAT TTA AAC GCT ACT GCA GGT ACA TGC GAA GAA ATG ATC AAA AGG GCT GTA TTT GCC AGA GAA TTG GGA GTT CCT ATC GTA ATG CAT GAC TAC TTA ACA GGG GGA TTC ACC GCA AAC ACT ACT TTG GCT CAT TAT TGC CGA GAT AAT GGT TTA CTT CTT CAC ATC CAT CGC GCA ATG CAT GCA GTT ATT GAT AGA CAG AAA AAT CAT GGT ATG CAC TTT CGT GTA CTA GCT AAG GCA TTA CGT ATG TCT GGT GGA GAT CAT ATT CAC TCT GGT ACC GTA GTA GGT AAA CTT GAA GGG GAA AGA GAC ATA ACT TTG GGT TTT GTT GAT TTA CTG CGT GAT GAT TTT GTT GAA AAA GAT CGA AGC CGC GGT ATT TAT TTC ACT CAA GAT TGG GTC TCT CTA CCG GGT GTT CTG CCC GTG GCT TCG GGG GGT ATT CAC GTT TGG CAT ATG CCT GCT CTG ACC GAG ATC TTT GGA GAT GAT TCC GTA CTA CAA TTC GGT GGA GGA ACT TTA GGG CAC CCT TGG GGA AAT GCA CCC GGT GCC GTT GCT AAT CGA GTA GCT CTA GAA GCA TGT GTA CAA GCT CGT AAT GAG GGA CGT GAT CTT GCT CGT GAG GGT AAT GAA ATT ATC CGT GAA GCT AGC AAA TGG AGC CCT GAA CTA GCT GCT GCT TGT GAA GTA TGG AAG GAG ATT AAA TTT GAA TTC CAA GCA ATG GAT ACG TTG
4
Pfre186_DNA2 ATG TCA CCA CAA ACA GAG ACT AAA ACA GGT GTT GGA TTC AAG GCT GGT GTT AAA GAT TAT AAA TTG ACT TAT TAT ACT CCT GAG TAT GAA ACC AAA GAT ACT GAT ATC TTG GCA GCA TTC CGA GTA ACT CCT CAA CCT GGA GTT CCG CCC GAG GAA GCA GGG GCC GCA GTA GCT GCT GAA TCT TCT ACT GGT ACA TGG ACA ACT GTG TGG ACC GAC GGG CTT ACC AGT CTT GAT CGT TAT AAG GGA CGA TGC TAC GAC ATC GAG CCC GTT GCT GGA GAA GAA AAT CAA TTT ATT GCT TAT GTA GCT TAC CCC TTA GAC CTT TTT GAA GAA GGT TCT GTT ACT AAC ATG TTT ACT TCC ATT GTG GGT AAT GTA TTT GGG TTC AAA GCC CTA CGC GCT CTA CGT CTG GAG GAT TTG CGA ATT CCT CCT GCT TAT GTT AAA ACT TTT CAA GGC CCA CCT CAT GGT ATC CAA GTT GAA AGA GAT AAA TTG AAC AAG TAT GGT CGC CCC CTA TTG GGC TGT ACT ATT AAA CCT AAA TTG GGG TTA TCC GCT AAG AAT TAC GGT AGA GCA GTT TAT GAA TGT CTA CGC GGT GGA CTT GAT TTT ACC AAA GAT GAT GAG AAC GTG AAC TCC CAA CCA TTT ATG CGT TGG AGA GAT CGT TTC TTA TTT TGT GCC GAA GCA CTT TAT AAA GCA CAG GCT GAA ACC GGT GAA ATC AAA GGG CAT TAT TTA AAC GCT ACT GCA GGT ACA TGC GAA GAA ATG ATC AAA AGG GCT GTA TTT GCC AGA GAA TTG GGA GTT CCT ATC GTA ATG CAT GAC TAC TTA ACA GGG GGA TTC ACC GCA AAC ACT ACT TTG GCT CAT TAT TGC CGA GAT AAT GGT TTA CTT CTT CAC ATC CAT CGC GCA ATG CAT GCA GTT ATT GAT AGA CAG AAA AAT CAT GGT ATG CAC TTT CGT GTA CTA GCT AAG GCA TTA CGT ATG TCT GGT GGA GAT CAT ATT CAC TCT GGT ACC GTA GTA GGT AAA CTT GAA GGG GAA AGA GAC ATA ACT TTG GGT TTT GTT GAT TTA CTG CGT GAT GAT TTT ATT GAA AAA GAT CGA AGC CGC GGT ATT TAT TTC ACT CAA GAT TGG GTC TCT CTA CCG GGT GTT CTG CCC GTG GCT TCG GGG GGT ATT CAC GTT TGG CAT ATG CCT GCT CTG ACC GAG ATC TTT GGA GAT GAT TCC GTA CTA CAA TTC GGT GGA GGA ACT TTA GGG CAC CCT TGG GGA AAT GCA CCC GGT GCC GTT GCT AAT CGA GTA GCT CTA GAA GCA TGT GTA CAA GCT CGT AAT GAG GGA CGT GAT CTT GCT CGT GAG GGT AAT GAA ATT ATC CGT GAA GCT AGC AAA TGG AGC CCT GAA CTA GCT GCT GCT TGT GAA GTA TGG AAG GAG ATT AAA TTT GAA TTC CAA GCA ATG GAT ACG TTG
5
Pgra187_DNA2 ATG TCA CCA CAA ACA GAG ACT AAA GCA GGT GTT GGA TTC AAG GCT GGT GTT AAA GAT TAT AAA TTG ACT TAT TAT ACT CCT GAC TAT GAA ACC AAA GAT ACT GAT ATC TTG GCA GCA TTC CGA GTA ACT CCT CAA CCT GGA GTT CCG CCC GAG GAA GCA GGG GCC GCA GTA GCT GCT GAA TCT TCT ACT GGT ACA TGG ACA ACT GTG TGG ACC GAC GGG CTT ACC AGT CTT GAT CGT TAT AAG GGA CGA TGC TAC GAC ATC GAG CCC GTT GCT GGA GAA GAA AAT CAA TTT ATT GCT TAT GTA GCT TAC CCC TTA GAC CTT TTT GAA GAA GGT TCT GTT ACT AAC ATG TTT ACT TCC ATT GTG GGT AAT GTA TTT GGG TTC AAA GCC CTA CGC GCT CTA CGT CTG GAG GAT TTG CGA ATT CCT CCT GCT TAT ACT AAA ACT TTT CAA GGC CCA CCT CAT GGT ATC CAA GTT GAA AGA GAT AAA TTG AAC AAG TAT GGT CGC CCC CTA TTG GGC TGT ACT ATT AAA CCT AAA TTG GGG TTA TCC GCT AAG AAT TAC GGT AGA GCA GTT TAT GAA TGT CTA CGC GGT GGA CTT GAT TTT ACC AAA GAT GAT GAG AAC GTG AAC TCC CAA CCA TTT ATG CGT TGG AGA GAT CGT TTC TTA TTT TGT GCC GAA GCA CTT TAT AAA GCA CAG ACT GAA ACC GGT GAA ATC AAA GGG CAT TAT TTA AAC GCT ACT GCA GGT ACA TGC GAA GAA ATG ATG AAA AGG GCT ATA TTT GCC AGA GAA TTG GGA GTT CCT ATT GTA ATG CAT GAC TAC TTA ACA GGG GGA TTC ACC GCA AAC ACT AGT TTG GCT CAT TAT TGC CGA GAT AAT GGT TTA CTT CTT CAC ATC CAT CGC GCA ATG CAT GCA GTT ATT GAT AGA CAG AAA AAT CAT GGT ATA CAC TTT CGT GTA CTA GCT AAG GCA TTA CGT ATG TCT GGT GGA GAT CAT ATT CAC TCT GGT ACC GTA GTA GGT AAA CTT GAA GGG GAA AGA GAC ATA ACT TTG GGT TTT GTT GAT TTA CTG CGT GAT GAT TTT GTT GAA AAA GAT CGA AGC CGC GGT ATT TAT TTC ACT CAA GAT TGG GTC TCT CTA CCG GGT GTT CTG CCC GTG GCT TCG GGG GGT ATT CAC GTT TGG CAT ATG CCT GCT CTG ACC GAG ATC TTT GGA GAT GAT TCC GTA CTA CAA TTC GGT GGA GGA ACT TTA GGG CAC CCT TGG GGA AAT GCA CCT GGT GCC GTT GCT AAT CGA GTA GCT CTA GAA GCA TGT GTA CAA GCT CGT AAT GAG GGA CGT GAT CTT GCT CGT GAG GGT AAT GAA ATT ATC CGT GAA GCT AGC AAA TGG AGC CCT GAA CTA GCT GCT GCT TGT GAA GTA TGG AAG GAG ATA AAA TTT GAA TTC GAA GCA ATG GAT ACG TTG
6
Phet26_DNA21 ATG TCA CCA CAA ACA GAG ACT AAA GCA GGT GTT GGA TTC AAG GCT GGT GTT AAA GAT TAT AAA TTG ACT TAT TAT ACT CCT GAC TAT GAA ACC AAA GAT ACT GAT ATC TTG GCA GCA TTC CGA GTA ACT CCT CAA CCT GGA GTT CCG CCC GAG GAA GCA GGG GCC GCA GTA GCT GCT GAA TCT TCT ACT GGT ACA TGG ACA ACT GTG TGG ACC GAC GGG CTT ACC AGT CTT GAT CGT TAT AAG GGA CGA TGC TAC GAC ATC GAG CCC GTT GCT GGA GAA GAA AAT CAA TTT ATT GCT TAT GTA GCT TAC CCC TTA GAC CTT TTT GAA GAA GGT TCT GTT ACT AAC ATG TTT ACT TCC ATT GTG GGT AAT GTA TTT GGG TTC AAA GCC CTA CGC GCT CTA CGT CTG GAG GAT TTG CGA ATT CCT CCT GCT TAT GTT AAA ACT TTT CAA GGC CCA CCT CAT GGT ATC CAA GTT GAA AGA GAT AAA TTG AAC AAG TAT GGT CGC CCC CTA TTG GGC TGT ACT ATT AAA CCT AAA TTG GGG TTA TCC GCT AAG AAT TAC GGT AGA GCA GTT TAT GAA TGT CTA CGC GGT GGA CTT GAT TTT ACC AAA GAT GAT GAG AAC GTG AAC TCC CAA CCA TTT ATG CGT TGG AGA GAT CGT TTC TTA TTT TGT GCC GAA GCA CTT TAT AAA GCA CAG GCT GAA ACC GGT GAA ATC AAA GGG CAT TAT TTA AAC GCT ACT GCA GGT ACA TGC GAA GAA ATG ATC AAA AGG GCT GTA TTT GCC AGA GAA TTG GGA GTT CCT ATC GTA ATG CAT GAC TAC TTA ACA GGG GGA TTC ACC GCA AAC ACT AGT TTG GCT CAT TAT TGC CGA GAT AAT GGT TTA CTT CTT CAC ATC CAT CGC GCA ATG CAT GCA GTT ATT GAT AGA CAG AAA AAT CAT GGT ATA CAC TTT CGT GTA CTA GCT AAG GCA TTA CGT ATG TCT GGT GGA GAT CAT ATT CAC TCT GGT ACC GTA GTA GGT AAA CTT GAA GGG GAA AGA GAC ATA ACT TTG GGT TTT GTT GAT TTA CTG CGT GAT GAT TTT GTT GAA AAA GAT CGA AGC CGC GGT ATT TAT TTC ACT CAA GAT TGG GTC TCT CTA CCG GGT GTT CTA CCC GTG GCT TCG GGG GGT ATT CAC GTT TGG CAT ATG CCT GCT CTG ACC GAG ATC TTT GGA GAT GAT TCC GTA CTA CAA TTC GGT GGA GGA ACT TTA GGG CAC CCT TGG GGA AAT GCA CCC GGT GCC GTT GCT AAT CGA GTA GCT CTA GAA GCA TGT GTA CAA GCT CGT AAT GAG GGA CGT GAT CTT GCT CGT GAG GGT AAT GAA ATT ATC CGT GAA GCT AGC AAA TGG AGC CCT GAA CTA GCT GCT GCT TGT GAA GTA TGG AAG GAG ATT AAA TTT GAA TTC CAA GCA ATG GAT ACG TTG
7
Pmex37_DNA21 ATG TCA CCA CAA ACA GAG ACT AAA GCA GGT GTT GGA TTC AAG GCT GGT GTT AAA GAT TAT AAA TTG ACT TAT TAT ACT CCT GAC TAT GAA ACC AAA GAT ACT GAT ATC TTG GCA GCA TTC CGA GTA ACT CCT CAA CCT GGA GTT CCG CCC GAG GAA GCA GGG GCC GCA GTA GCT GCT GAA TCT TCT ACT GGT ACA TGG ACA ACT GTG TGG ACC GAC GGG CTT ACC AGT CTT GAT CGT TAT AAG GGA CGA TGC TAC GAC ATC GAG CCC GTT GCT GGA GAA GAA AAT CAA TTT ATT GCT TAT GTA GCT TAC CCC TTA GAC CTT TTT GAA GAA GGT TCT GTT ACT AAC ATG TTT ACT TCC ATT GTG GGT AAT GTA TTT GGG TTC AAA GCC CTA CGC GCT CTA CGT CTG GAG GAT TTG CGA ATT CCT ACT GCT TAT GTT AAA ACT TTT CAA GGC CCA CCT CAT GGT ATC CAA GTT GAA AGA GAT AAA TTG AAC AAG TAT GGT CGC CCC CTA TTG GGC TGT ACT ATT AAA CCT AAA TTG GGG TTA TCC GCT AAG AAT TAC GGT AGA GCA GTT TAT GAA TGT CTA CGC GGT GGA CTT GAT TTT ACC AAA GAT GAT GAG AAC GTG AAC TCC CAA CCA TTT ATG CGT TGG AGA GAT CGT TTC TTA TTT TGT GCC GAA GCA CTT TAT AAA GCA CAG GCT GAA ACC GGT GAA ATC AAA GGG CAT TAT TTA AAC GCT ACT GCA GGT ACA TGC GAA GAA ATG ATC AAA AGG GCT GTA TTT GCC AGA GAA TTG GGA GTT CCT ATC GTA ATG CAT GAC TAC TTA ACA GGG GGA TTC ACC GCA AAC ACT AGT TTG GCT CAT TAT TGC CGA GAT AAT GGT TTA CTT CTT CAC ATC CAT CGC GCA ATG CAT GCA GTT ATT GAT AGA CAG AAA AAT CAT GGT ATG CAC TTT CGT GTA CTA GCT AAG GCA TTA CGT ATG TCT GGT GGA GAT CAT ATT CAC TCT GGT ACC GTA GTA GGT AAA CTT GAA GGG GAA AGA GAC ATA ACT TTG GGT TTT GTT GAT TTA CTG CGT GAT GAT TTT ATT GAA AAA GAT CGA AGC CGC GGT ATT TAT TTC ACT CAA GAT TGG GTC TCT CTA CCG GGT GTT CTG CCC GTG GCT TCG GGG GGT ATT CAC GTT TGG CAT ATG CCT GCT CTG ACC GAG ATC TTT GGA GAT GAT TCC GTA CTA CAA TTC GGT GGA GGA ACT TTA GGG CAC CCT TGG GGA AAT GCA CCC GGT GCC GTT GCT AAT CGA GTA GCT CTA GAA GCA TGT GTA CAA GCT CGT AAT GAG GGA CGT GAT CTT GCT CGT GAG GGT AAT GAA ATT ATC CGT GAA GCT AGC AAA TGG AGC CCT GAA CTA GCT GCT GCT TGT GAA GTA TGG AAG GAG ATT AAA TTT GAA TTC CAA GCA ATG GAT ACG TTG
8
Ptre197_DNA2 ATG TCA CCA CAA ACA GAG ACT AAA GCA GGT GTT GGA TTC AAG GCT GGT GTT AAA GAT TAT AAA TTG ACT TAT TAT ACT CCT GAC TAT GAA ACC AAA GAT ACT GAT ATC TTG GCA GCA TTC CGA GTA ACT CCT CAA CCT GGA GTT CCG CCC GAG GAA GCA GGG GCC GCA GTA GCT GCT GAA TCT TCT ACT GGT ACA TGG ACA ACT GTG TGG ACC GAC GGG CTT ACC AGT CTT GAT CGT TAT AAG GGA CGA TGC TAC GAC ATC GAG CCC GTT GCT GGA GAA GAA AAT CAA TTT ATT GCT TAT GTA GCT TAC CCC TTA GAC CTT TTT GAA GAA GGT TCT GTT ACT AAC ATG TTT ACT TCC ATT GTG GGT AAT GTA TTT GGG TTC AAA GCC CTA CGC GCT CTA CGT CTG GAG GAT TTG CGA ATT CCT CCT GCT TAT ACT AAA ACT TTT CAA GGC CCA CCT CAT GGT ATC CAA GTT GAA AGA GAT AAA TTG AAC AAG TAT GGT CGC CCC CTA TTG GGC TGT ACT ATT AAA CCT AAA TTG GGG TTA TCC GCT AAG AAT TAC GGT AGA GCA GTT TAT GAA TGT CTA CGC GGT GGA CTT GAT TTT ACC AAA GAT GAT GAG AAC GTG AAC TCC CAA CCA TTT ATG CGT TGG AGA GAT CGT TTC TTA TTT TGT GCC GAA GCA CTT TAT AAA GCA CAG ACT GAA ACC GGT GAA ATC AAA GGG CAT TAT TTA AAC GCT ACT GCA GGT ACA TGC GAA GAA ATG ATG AAA AGG GCT ATA TTT GCC AGA GAA TTG GGA GTT CCT ATC GTA ATG CAT GAC TAC TTA ACA GGG GGA TTC ACC GCA AAC ACT AGT TTG GCT CAT TAT TGC CGA GAT AAT GGT TTA CTT CTT CAC ATC CAT CGC GCA ATG CAT GCA GTT ATT GAT AGA CAG AAA AAT CAT GGT ATA CAC TTT CGT GTA CTA GCT AAG GCA TTA CGT ATG TCT GGT GGA GAT CAT ATT CAC TCT GGT ACC GTA GTA GGT AAA CTT GAA GGG GAA AGA GAC ATA ACT TTG GGT TTT GTT GAT TTA CTG CGT GAT GAT TTT GTT GAA AAA GAT CGA AGC CGC GGT ATT TAT TTC ACT CAA GAT TGG GTC TCT CTA CCG GGT GTT CTG CCC GTG GCT TCG GGG GGT ATT CAC GTT TGG CAT ATG CCT GCT CTG ACC GAG ATC TTT GGA GAT GAT TCC GTA CTA CAA TTC GGT GGA GGA ACT TTA GGG CAC CCT TGG GGA AAT GCA CCT GGT GCT GTT GCT AAT CGA GTA GCT CTA GAA GCA TGT GTA CAA GCT CGT AAT GAG GGA CGT GAT CTT GCT CGT GAG GGT AAT GAA ATT ATC CGT GAA GCT AGC AAA TGG AGC CCT GAA CTA GCT GCT GCT TGT GAA GTA TGG AAG GAG ATT AAA TTT GAA TTC GAA GCA ATG GAT ACG TTG
9
WHR1_DNA225 ATG TCA CCA CAA ACA GAG ACT AAA GCG GGT GTT GGA TTC AAG GCT GGT GTT AAA GAT TAT AAA TTG ACT TAT TAT ACT CCT GAG TAT GAA ACC AAA GAT ACT GAT ATC TTG GCA GCA TTC CGA GTA ACT CCT CAA CCT GGA GTT CCG CCC GAG GAA GCA GGG GCC GCA GTA GCT GCT GAA TCT TCT ACT GGT ACA TGG ACA ACT GTG TGG ACC GAC GGG CTT ACC AGT CTT GAT CGT TAT AAG GGA CGA TGC TAC GAC ATC GAG CCC GTT GCT GGA GAA GAA AAT CAA TTT ATT GCT TAT GTA GCT TAC CCC TTA GAC CTT TTT GAA GAA GGT TCC GTT ACT AAC ATG TTT ACT TCC ATT GTG GGT AAT GTA TTT GGG TTC AAA GCC CTA CGC GCT CTA CGT CTG GAG GAT TTG CGA ATT CCT ACT GCT TAT GTT AAA ACT TTT CAA GGC CCA CCT CAT GGT ATC CAA GTT GAA AGA GAT AAA TTG AAC AAG TAT GGT CGC CCC CTA TTG GGC TGT ACT ATT AAA CCT AAA TTG GGG TTA TCC GCT AAG AAT TAC GGT AGA GCA GTT TAT GAA TGT CTA CGC GGT GGA CTT GAT TTT ACC AAA GAT GAT GAG AAC GTG AAC TCC CAA CCA TTT ATG CGT TGG AGA GAT CGT TTC TTA TTT TGT GCC GAA GCA CTT TAT AAA GCA CAG GCT GAA ACC GGT GAA ATC AAA GGG CAT TAT TTA AAC GCT ACT GCA GGT ACA TGC GAA GAA ATG ATG AAA AGG GCT GTA TTT GCC AGA GAA TTG GGA GTT CCT ATC GTA ATG CAT GAC TAC TTA ACA GGG GGA TTC ACC GCA AAC ACT AGT TTG GCT CAT TAT TGC CGA GAT AAT GGT TTA CTT CTT CAC ATC CAT CGC GCA ATG CAT GCA GTT ATT GAT AGA CAG AAA AAT CAT GGT ATA CAC TTT CGT GTA CTA GCT AAG GCA TTA CGT ATG TCT GGT GGA GAT CAT ATT CAC TCT GGT ACC GTA GTA GGT AAA CTT GAA GGG GAA AGA GAC ATA ACT TTG GGT TTT GTT GAT TTA CTG CGT GAT GAT TTT GTT GAA AAA GAT CGA AGC CGC GGT ATT TAT TTC ACT CAA GAT TGG GTC TCT CTA CCG GGT GTT CTG CCC GTG GCT TCG GGG GGT ATT CAC GTT TGG CAT ATG CCT GCT CTG ACC GAG ATC TTT GGA GAT GAT TCC GTA CTA CAA TTC GGT GGA GGA ACT TTA GGG CAC CCT TGG GGA AAT GCA CCC GGT GCC GTT GCT AAT CGA GTA GCT CTA GAA GCA TGT GTA CAA GCT CGT AAT GAG GGA CGT GAT CTT GCT CGT GAG GGT AAT GAA ATT ATC CGT GAA GCT AGC AAA TGG AGC CCT GAA CTA GCT GCT GCT TGT GAA GTA TGG AAG GAG ATT AAA TTT GAA TTC CAA GCA ATG GAT ACG TTG
10
YALD273_DNA5 ATG TCA CCA CAA ACA GAG ACT AAA GCA GGT GTT GGA TTC AAG GCT GGT GTT AAA GAT TAT AAA TTG ACT TAT TAT ACT CCT GAC TAT GAA ACC AAA GAT ACT GAT ATC TTG GCA GCA TTC CGA GTA ACT CCT CAA CCT GGA GTT CCG CCC GAG GAA GCA GGG GCC GCA GTA GCT GCT GAA TCT TCT ACT GGT ACA TGG ACA ACT GTG TGG ACC GAC GGG CTT ACC AGT CTT GAT CGT TAT AAG GGA CGA TGC TAC GAC ATC GAG CCC GTT GCT GGA GAA GAA AAT CAA TTT ATT GCT TAT GTA GCT TAC CCC TTA GAC CTT TTT GAA GAA GGT TCT GTT ACT AAC ATG TTT ACT TCC ATT GTG GGT AAT GTA TTT GGG TTC AAA GCC CTA CGC GCT CTA CGT CTG GAG GAT TTG CGA ATT CCT CCT GCT TAT GTT AAA ACT TTT CAA GGC CCA CCT CAT GGT ATC CAA GTT GAA AGA GAT AAA TTG AAC AAG TAT GGT CGC CCC CTA TTG GGC TGT ACT ATT AAA CCT AAA TTG GGG TTA TCC GCT AAG AAT TAC GGT AGA GCA GTT TAT GAA TGT CTA CGC GGT GGA CTT GAT TTT ACC AAA GAT GAT GAG AAC GTG AAC TCC CAA CCA TTT ATG CGT TGG AGA GAT CGT TTC TTA TTT TGT GCC GAA GCA CTT TAT AAA GCA CAG GCT GAA ACC GGT GAA ATC AAA GGG CAT TAT TTA AAC GCT ACT GCA GGT ACA TGC GAA GAA ATG ATC AAA AGG GCT GTA TTT GCC AGA GAA TTG GGA GTT CCT ATC GTA ATG CAT GAC TAC TTA ACA GGG GGA TTC ACC GCA AAC ACT AGT TTG GCT CAT TAT TGC CGA GAT AAT GGT TTA CTT CTT CAC ATC CAT CGC GCA ATG CAT GCA GTT ATT GAT AGA CAG AAA AAT CAT GGT ATA CAC TTT CGT GTA CTA GCT AAG GCA TTA CGT ATG TCT GGT GGA GAT CAT ATT CAC TCT GGT ACC GTA GTA GGT AAA CTT GAA GGG GAA AGA GAC ATA ACT TTG GGT TTT GTT GAT TTA CTG CGT GAT GAT TTT GTT GAA AAA GAT CGA AGC CGC GGT ATT TAT TTC ACT CAA GAT TGG GTC TCT CTA CCG GGT GTT CTA CCC GTG GCT TCG GGG GGT ATT CAC GTT TGG CAT ATG CCT GCT CTG ACC GAG ATC TTT GGA GAT GAT TCC GTA CTA CAA TTC GGT GGA GGA ACT TTA GGG CAC CCT TGG GGA AAT GCA CCC GGT GCC GTT GCT AAT CGA GTA GCT CTA GAA GCA TGT GTA CAA GCT CGT AAT GAG GGA CGT GAT CTT GCT CGT GAG GGT AAT GAA ATT ATC CGT GAA GCT AGC AAA TGG AGC CCT GAA CTA GCT GCT GCT TGT GAA GTA TGG AAG GAG ATT AAA TTT GAA TTC CAA GCA ATG GAT ACG TTG
11
Pop_trich_ch ATG TCA CCA CAA ACA GAG ACT AAA GCA GGT GTT GGA TTC AAG GCT GGT GTT AAA GAT TAT AAA TTG ACT TAT TAT ACT CCT GAC TAT GAA ACC AAA GAT ACT GAT ATC TTG GCA GCA TTC CGA GTA ACT CCT CAA CCT GGA GTT CCG CCC GAG GAA GCA GGG GCC GCA GTA GCT GCT GAA TCT TCT ACT GGT ACA TGG ACA ACT GTG TGG ACC GAC GGG CTT ACC AGT CTT GAT CGT TAT AAG GGA CGA TGC TAC GAC ATC GAG CCC GTT GCT GGA GAA GAA AAT CAA TTT ATT GCT TAT GTA GCT TAC CCC TTA GAC CTT TTT GAA GAA GGT TCT GTT ACT AAC ATG TTT ACT TCC ATT GTG GGT AAT GTA TTT GGG TTC AAA GCC CTA CGC GCT CTA CGT CTG GAG GAT TTG CGA ATT CCT CCT GCT TAT GTT AAA ACT TTT CAA GGC CCA CCT CAT GGT ATC CAA GTT GAA AGA GAT AAA TTG AAC AAG TAT GGT CGC CCC CTA TTG GGC TGT ACT ATT AAA CCT AAA TTG GGG TTA TCC GCT AAG AAT TAC GGT AGA GCA GTT TAT GAA TGT CTA CGC GGT GGA CTT GAT TTT ACC AAA GAT GAT GAG AAC GTG AAC TCC CAA CCA TTT ATG CGT TGG AGA GAT CGT TTC TTA TTT TGT GCC GAA GCA CTT TAT AAA GCA CAG GCT GAA ACC GGT GAA ATC AAA GGG CAT TAT TTA AAC GCT ACT GCA GGT ACA TGC GAA GAA ATG ATC AAA AGG GCT GTA TTT GCC AGA GAA TTG GGA GTT CCT ATC GTA ATG CAT GAC TAC TTA ACA GGG GGA TTC ACC GCA AAC ACT AGT TTG GCT CAT TAT TGC CGA GAT AAT GGT TTA CTT CTT CAC ATC CAT CGC GCA ATG CAT GCA GTT ATT GAT AGA CAG AAA AAT CAT GGT ATA CAC TTT CGT GTA CTA GCT AAG GCA TTA CGT ATG TCT GGT GGA GAT CAT ATT CAC TCT GGT ACC GTA GTA GGT AAA CTT GAA GGG GAA AGA GAC ATA ACT TTG GGT TTT GTT GAT TTA CTG CGT GAT GAT TTT GTT GAA AAA GAT CGA AGC CGC GGT ATT TAT TTC ACT CAA GAT TGG GTC TCT CTA CCG GGT GTT CTA CCC GTG GCT TCG GGG GGT ATT CAC GTT TGG CAT ATG CCT GCT CTG ACC GAG ATC TTT GGA GAT GAT TCC GTA CTA CAA TTC GGT GGA GGA ACT TTA GGG CAC CCT TGG GGA AAT GCA CCC GGT GCC GTT GCT AAT CGA GTA GCT CTA GAA GCA TGT GTA CAA GCT CGT AAT GAG GGA CGT GAT CTT GCT CGT GAG GGT AAT GAA ATT ATC CGT GAA GCT AGC AAA TGG AGC CCT GAA CTA GCT GCT GCT TGT GAA GTA TGG AAG GAG ATT AAA TTT GAA TTC CAA GCA ATG GAT ACG TTG
15
Printing out site pattern counts
20
Pdel181_DNA2 AAA AAC AAG AAT ACA ACA ACC ACG ACT ACT AGA AGC AGG AGT ATA ATC ATC ATC ATG ATG ATT ATT CAA CAA CAC CAG CAT CCA CCC CCC CCG CCT CCT CGA CGC CGT CTA CTG CTG CTT GAA GAC GAG GAG GAT GCA GCC GCC GCT GCT GGA GGC GGG GGT GTA GTA GTC GTG GTT GTT GTT TAC TAT TCA TCC TCG TCT TCT TGC TGG TGT TTA TTC TTG TTT
21
Pfre186_DNA2 ... ... ... ... ... ... ... ... ... ... ... ... ... ... ... ... ... ... ... ... ... ... ... ... ... ... ... ... ... ... ... ... ... ... ... ... ... ... ... ... ... ... ... ... ... ... ... ... ... ... ... ... ... ... ... ... ... ... A.. ... ... ... ... ... ... ... ... ... ... ... ... ... ... ... ...
22
Pgra187_DNA2 ... ... ... ... ... G.. ... ... ... .G. ... ... ... ... ... ... ..G ..T ..A ... ..A ... ... G.. ... ... ... ... ... ..T ... ... ... ... ... ... ... ... ... ... ... ... ..C ... ... ... ... ... A.. ... ... ... ... ... A.. ... ... ... ... AC. ... ... ... ... ... ... ... ... ... ... ... ... ... ... ...
23
Phet26_DNA21 ... ... ... ... ... G.. ... ... ... .G. ... ... ... ... ... ... ... ... ..A ... ... ... ... ... ... ... ... ... ... ... ... ... ... ... ... ... ... ..A ... ... ... ... ..C ... ... ... ... ... ... ... ... ... ... ... ... ... ... ... ... ... ... ... ... ... ... ... ... ... ... ... ... ... ... ... ...
24
Pmex37_DNA21 ... ... ... ... ... G.. ... ... ... .G. ... ... ... ... ... ... ... ... ... ... ... ... ... ... ... ... ... ... ... ... ... A.. ... ... ... ... ... ... ... ... ... ... ..C ... ... ... ... ... ... ... ... ... ... ... ... ... ... ... A.. ... ... ... ... ... ... ... ... ... ... ... ... ... ... ... ...
25
Ptre197_DNA2 ... ... ... ... ... G.. ... ... ... .G. ... ... ... ... ... ... ..G ... ..A ... ... ... ... G.. ... ... ... ... ... ..T ... ... ... ... ... ... ... ... ... ... ... ... ..C ... ... ... ... ..T A.. ... ... ... ... ... A.. ... ... ... ... AC. ... ... ... ... ... ... ... ... ... ... ... ... ... ... ...
26
WHR1_DNA225 ... ... ... ... ... G.G ... ... ... .G. ... ... ... ... ... ... ..G ... ..A ... ... ... ... ... ... ... ... ... ... ... ... A.. ... ... ... ... ... ... ... ... ... ... ... ... ... ... ... ... ... ... ... ... ... ... ... ... ... ... ... ... ... ... ... ... ... ... ..C ... ... ... ... ... ... ... ...
27
YALD273_DNA5 ... ... ... ... ... G.. ... ... ... .G. ... ... ... ... ... ... ... ... ..A ... ... ... ... ... ... ... ... ... ... ... ... ... ... ... ... ... ... ..A ... ... ... ... ..C ... ... ... ... ... ... ... ... ... ... ... ... ... ... ... ... ... ... ... ... ... ... ... ... ... ... ... ... ... ... ... ...
28
Pop_trich_ch ... ... ... ... ... G.. ... ... ... .G. ... ... ... ... ... ... ... ... ..A ... ... ... ... ... ... ... ... ... ... ... ... ... ... ... ... ... ... ..A ... ... ... ... ..C ... ... ... ... ... ... ... ... ... ... ... ... ... ... ... ... ... ... ... ... ... ... ... ... ... ... ... ... ... ... ... ...
30
18 6 6 9 5 1 8 1 16 1 6 3 1 1 1
31
7 1 1 1 9 1 9 9 1 5 2 9 3 5 1
32
2 1 10 6 5 11 9 1 3 9 24 5 1 9 22
33
15 4 1 1 23 13 2 9 23 1 12 1 4 1 1
34
13 4 13 1 4 1 1 5 3 8 5 9 8 10 14
37
CODONML (in paml version 4.5, December 2011) examples/small_taxon_set.nuc
38
Model: One dN/dS ratio for branches
39
Codon frequency model: F3x4
42
Codon usage in sequences
43
--------------------------------------------------------------------------------------------------------------
44
Phe TTT 14 14 14 14 14 14 | Ser TCT 6 6 6 6 6 6 | Tyr TAT 13 13 13 13 13 13 | Cys TGT 5 5 5 5 5 5
45
TTC 8 8 8 8 8 8 | TCC 4 4 4 4 4 4 | TAC 4 4 4 4 4 4 | TGC 3 3 3 3 3 3
46
Leu TTA 9 9 9 9 9 9 | TCA 1 1 1 1 1 1 | *** TAA 0 0 0 0 0 0 | *** TGA 0 0 0 0 0 0
47
TTG 10 10 10 10 10 10 | TCG 1 1 1 1 1 1 | TAG 0 0 0 0 0 0 | Trp TGG 8 8 8 8 8 8
48
--------------------------------------------------------------------------------------------------------------
49
Leu CTT 9 9 9 9 9 9 | Pro CCT 11 11 12 11 10 12 | His CAT 9 9 9 9 9 9 | Arg CGT 11 11 11 11 11 11
50
CTC 0 0 0 0 0 0 | CCC 6 6 5 6 6 5 | CAC 5 5 5 5 5 5 | CGC 5 5 5 5 5 5
51
CTA 9 9 9 10 9 9 | CCA 3 3 3 3 3 3 | Gln CAA 10 10 9 10 10 9 | CGA 6 6 6 6 6 6
52
CTG 4 4 4 3 4 4 | CCG 2 2 2 2 2 2 | CAG 2 2 2 2 2 2 | CGG 0 0 0 0 0 0
53
--------------------------------------------------------------------------------------------------------------
54
Ile ATT 10 11 10 10 11 10 | Thr ACT 17 17 18 16 17 18 | Asn AAT 9 9 9 9 9 9 | Ser AGT 1 1 2 2 2 2
55
ATC 9 9 7 9 9 8 | ACC 8 8 8 8 8 8 | AAC 6 6 6 6 6 6 | AGC 3 3 3 3 3 3
56
ATA 1 1 4 2 1 3 | ACA 6 6 5 5 5 5 | Lys AAA 18 18 18 18 18 18 | Arg AGA 6 6 6 6 6 6
57
Met ATG 10 10 10 9 10 10 | ACG 1 1 1 1 1 1 | AAG 6 6 6 6 6 6 | AGG 1 1 1 1 1 1
58
--------------------------------------------------------------------------------------------------------------
59
Val GTT 15 14 14 15 14 14 | Ala GCT 24 24 23 24 24 24 | Asp GAT 22 22 22 22 22 22 | Gly GGT 23 23 23 23 23 23
60
GTC 1 1 1 1 1 1 | GCC 5 5 5 5 5 4 | GAC 5 5 6 6 6 6 | GGC 2 2 2 2 2 2
61
GTA 13 13 12 13 13 12 | GCA 15 15 16 16 16 16 | Glu GAA 24 24 25 24 24 25 | GGA 13 13 13 13 13 13
62
GTG 4 4 4 4 4 4 | GCG 0 0 0 0 0 0 | GAG 10 10 9 9 9 9 | GGG 9 9 9 9 9 9
63
--------------------------------------------------------------------------------------------------------------
65
--------------------------------------------------------------------------
66
Phe TTT 14 14 14 | Ser TCT 5 6 6 | Tyr TAT 13 13 13 | Cys TGT 5 5 5
67
TTC 8 8 8 | TCC 5 4 4 | TAC 4 4 4 | TGC 3 3 3
68
Leu TTA 9 9 9 | TCA 1 1 1 | *** TAA 0 0 0 | *** TGA 0 0 0
69
TTG 10 10 10 | TCG 1 1 1 | TAG 0 0 0 | Trp TGG 8 8 8
70
--------------------------------------------------------------------------
71
Leu CTT 9 9 9 | Pro CCT 10 11 11 | His CAT 9 9 9 | Arg CGT 11 11 11
72
CTC 0 0 0 | CCC 6 6 6 | CAC 5 5 5 | CGC 5 5 5
73
CTA 9 10 10 | CCA 3 3 3 | Gln CAA 10 10 10 | CGA 6 6 6
74
CTG 4 3 3 | CCG 2 2 2 | CAG 2 2 2 | CGG 0 0 0
75
--------------------------------------------------------------------------
76
Ile ATT 10 10 10 | Thr ACT 17 16 16 | Asn AAT 9 9 9 | Ser AGT 2 2 2
77
ATC 8 9 9 | ACC 8 8 8 | AAC 6 6 6 | AGC 3 3 3
78
ATA 2 2 2 | ACA 5 5 5 | Lys AAA 18 18 18 | Arg AGA 6 6 6
79
Met ATG 10 9 9 | ACG 1 1 1 | AAG 6 6 6 | AGG 1 1 1
80
--------------------------------------------------------------------------
81
Val GTT 15 15 15 | Ala GCT 24 24 24 | Asp GAT 22 22 22 | Gly GGT 23 23 23
82
GTC 1 1 1 | GCC 5 5 5 | GAC 5 6 6 | GGC 2 2 2
83
GTA 13 13 13 | GCA 15 16 16 | Glu GAA 24 24 24 | GGA 13 13 13
84
GTG 4 4 4 | GCG 1 0 0 | GAG 10 9 9 | GGG 9 9 9
85
--------------------------------------------------------------------------
87
Codon position x base (3x4) table for each sequence.
90
position 1: T:0.18105 C:0.19368 A:0.23579 G:0.38947
91
position 2: T:0.26526 C:0.23158 A:0.30105 G:0.20211
92
position 3: T:0.41895 C:0.15579 A:0.28211 G:0.14316
93
Average T:0.28842 C:0.19368 A:0.27298 G:0.24491
96
position 1: T:0.18105 C:0.19368 A:0.23789 G:0.38737
97
position 2: T:0.26526 C:0.23158 A:0.30105 G:0.20211
98
position 3: T:0.41895 C:0.15579 A:0.28211 G:0.14316
99
Average T:0.28842 C:0.19368 A:0.27368 G:0.24421
102
position 1: T:0.18105 C:0.19158 A:0.24000 G:0.38737
103
position 2: T:0.26316 C:0.23158 A:0.30105 G:0.20421
104
position 3: T:0.42105 C:0.15158 A:0.28632 G:0.14105
105
Average T:0.28842 C:0.19158 A:0.27579 G:0.24421
108
position 1: T:0.18105 C:0.19368 A:0.23368 G:0.39158
109
position 2: T:0.26526 C:0.22947 A:0.30105 G:0.20421
110
position 3: T:0.41895 C:0.15789 A:0.28632 G:0.13684
111
Average T:0.28842 C:0.19368 A:0.27368 G:0.24421
114
position 1: T:0.18105 C:0.19158 A:0.23789 G:0.38947
115
position 2: T:0.26526 C:0.22947 A:0.30105 G:0.20421
116
position 3: T:0.41895 C:0.15789 A:0.28211 G:0.14105
117
Average T:0.28842 C:0.19298 A:0.27368 G:0.24491
120
position 1: T:0.18105 C:0.19158 A:0.24000 G:0.38737
121
position 2: T:0.26316 C:0.23158 A:0.30105 G:0.20421
122
position 3: T:0.42316 C:0.15158 A:0.28421 G:0.14105
123
Average T:0.28912 C:0.19158 A:0.27509 G:0.24421
126
position 1: T:0.18105 C:0.19158 A:0.23579 G:0.39158
127
position 2: T:0.26526 C:0.22947 A:0.30105 G:0.20421
128
position 3: T:0.41684 C:0.15579 A:0.28211 G:0.14526
129
Average T:0.28772 C:0.19228 A:0.27298 G:0.24702
132
position 1: T:0.18105 C:0.19368 A:0.23368 G:0.39158
133
position 2: T:0.26526 C:0.22947 A:0.30105 G:0.20421
134
position 3: T:0.41895 C:0.15789 A:0.28632 G:0.13684
135
Average T:0.28842 C:0.19368 A:0.27368 G:0.24421
138
position 1: T:0.18105 C:0.19368 A:0.23368 G:0.39158
139
position 2: T:0.26526 C:0.22947 A:0.30105 G:0.20421
140
position 3: T:0.41895 C:0.15789 A:0.28632 G:0.13684
141
Average T:0.28842 C:0.19368 A:0.27368 G:0.24421
143
Sums of codon usage counts
144
------------------------------------------------------------------------------
145
Phe F TTT 126 | Ser S TCT 53 | Tyr Y TAT 117 | Cys C TGT 45
146
TTC 72 | TCC 37 | TAC 36 | TGC 27
147
Leu L TTA 81 | TCA 9 | *** * TAA 0 | *** * TGA 0
148
TTG 90 | TCG 9 | TAG 0 | Trp W TGG 72
149
------------------------------------------------------------------------------
150
Leu L CTT 81 | Pro P CCT 99 | His H CAT 81 | Arg R CGT 99
151
CTC 0 | CCC 52 | CAC 45 | CGC 45
152
CTA 84 | CCA 27 | Gln Q CAA 88 | CGA 54
153
CTG 33 | CCG 18 | CAG 18 | CGG 0
154
------------------------------------------------------------------------------
155
Ile I ATT 92 | Thr T ACT 152 | Asn N AAT 81 | Ser S AGT 16
156
ATC 77 | ACC 72 | AAC 54 | AGC 27
157
ATA 18 | ACA 47 | Lys K AAA 162 | Arg R AGA 54
158
Met M ATG 87 | ACG 9 | AAG 54 | AGG 9
159
------------------------------------------------------------------------------
160
Val V GTT 131 | Ala A GCT 215 | Asp D GAT 198 | Gly G GGT 207
161
GTC 9 | GCC 44 | GAC 51 | GGC 18
162
GTA 115 | GCA 141 | Glu E GAA 218 | GGA 117
163
GTG 36 | GCG 1 | GAG 84 | GGG 81
164
------------------------------------------------------------------------------
167
Codon position x base (3x4) table, overall
169
position 1: T:0.18105 C:0.19275 A:0.23649 G:0.38971
170
position 2: T:0.26480 C:0.23041 A:0.30105 G:0.20374
171
position 3: T:0.41942 C:0.15579 A:0.28421 G:0.14058
172
Average T:0.28842 C:0.19298 A:0.27392 G:0.24468
174
Codon frequencies under model, for use in evolver (TTT TTC TTA TTG ... GGG):
175
0.02080748 0.00772882 0.01409988 0.00697451
176
0.01810545 0.00672517 0.01226889 0.00606881
177
0.02365656 0.00878710 0.00000000 0.00000000
178
0.01601000 0.00594683 0.00000000 0.00536643
179
0.02215163 0.00822810 0.01501073 0.00742506
180
0.01927505 0.00715961 0.01306145 0.00646085
181
0.02518476 0.00935474 0.01706608 0.00844174
182
0.01704423 0.00633099 0.01154977 0.00571310
183
0.02717876 0.01009540 0.01841729 0.00911012
184
0.02364937 0.00878443 0.01602564 0.00792709
185
0.03090024 0.01147772 0.02093909 0.01035753
186
0.02091228 0.00776775 0.01417090 0.00700964
187
0.04478716 0.01663594 0.03034936 0.01501232
188
0.03897116 0.01447562 0.02640823 0.01306284
189
0.05091968 0.01891383 0.03450497 0.01706789
190
0.03446079 0.01280027 0.02335185 0.01155100
194
Nei & Gojobori 1986. dN/dS (dN, dS)
195
(Note: This matrix is not used in later ML. analysis.
196
Use runmode = -2 for ML pairwise comparison.)
199
Pfre186_DNA2aaaaaaaa-1.0300 (0.0009 0.0000)
200
Pgra187_DNA2 1.0623 (0.0093 0.0088) 1.1684 (0.0102 0.0088)
201
Phet26_DNA21 1.2775 (0.0037 0.0029) 1.5968 (0.0046 0.0029) 0.4758 (0.0056 0.0117)
202
Pmex37_DNA21 -1.0000 (0.0046 0.0000)-1.0000 (0.0037 0.0000) 0.9534 (0.0084 0.0088) 0.9555 (0.0028 0.0029)
203
Ptre197_DNA2 1.5965 (0.0093 0.0058) 1.7561 (0.0102 0.0058) 0.0000 (0.0000 0.0088) 0.6357 (0.0056 0.0088) 1.4328 (0.0084 0.0058)
204
WHR1_DNA225 0.7964 (0.0046 0.0058) 0.9557 (0.0056 0.0058) 0.4430 (0.0065 0.0147) 0.3175 (0.0028 0.0088) 0.6354 (0.0037 0.0058) 0.5548 (0.0065 0.0117)
205
YALD273_DNA5 1.2775 (0.0037 0.0029) 1.5968 (0.0046 0.0029) 0.4758 (0.0056 0.0117)-1.0000 (0.0000 0.0000) 0.9555 (0.0028 0.0029) 0.6357 (0.0056 0.0088) 0.3175 (0.0028 0.0088)
206
Pop_trich_ch 1.2775 (0.0037 0.0029) 1.5968 (0.0046 0.0029) 0.4758 (0.0056 0.0117)-1.0000 (0.0000 0.0000) 0.9555 (0.0028 0.0029) 0.6357 (0.0056 0.0088) 0.3175 (0.0028 0.0088)-1.0000 (0.0000 0.0000)
208
pairwise comparison, codon frequencies: F3x4.
211
2 (Pfre186_DNA2) ... 1 (Pdel181_DNA2)
213
0.00214 999.00000 99.00000
215
t= 0.0021 S= 396.3 N= 1028.7 dN/dS= 99.0000 dN = 0.0010 dS = 0.0000
218
3 (Pgra187_DNA2) ... 1 (Pdel181_DNA2)
220
0.02808 3.26389 0.98370
222
t= 0.0281 S= 341.7 N= 1083.3 dN/dS= 0.9837 dN = 0.0093 dS = 0.0095
225
3 (Pgra187_DNA2) ... 2 (Pfre186_DNA2)
227
0.03025 3.71696 1.10191
229
t= 0.0302 S= 345.4 N= 1079.6 dN/dS= 1.1019 dN = 0.0103 dS = 0.0094
232
4 (Phet26_DNA21) ... 1 (Pdel181_DNA2)
234
0.01073 3.11375 1.18654
236
t= 0.0107 S= 342.5 N= 1082.5 dN/dS= 1.1865 dN = 0.0037 dS = 0.0031
239
4 (Phet26_DNA21) ... 2 (Pfre186_DNA2)
241
0.01287 4.25522 1.54964
243
t= 0.0129 S= 352.0 N= 1073.0 dN/dS= 1.5496 dN = 0.0047 dS = 0.0030
246
4 (Phet26_DNA21) ... 3 (Pgra187_DNA2)
248
0.02179 4.30601 0.45869
250
t= 0.0218 S= 349.8 N= 1075.2 dN/dS= 0.4587 dN = 0.0056 dS = 0.0123
253
5 (Pmex37_DNA21) ... 1 (Pdel181_DNA2)
255
0.01053 1.55733 99.00000
257
t= 0.0105 S= 318.9 N= 1106.1 dN/dS= 99.0000 dN = 0.0045 dS = 0.0000
260
5 (Pmex37_DNA21) ... 2 (Pfre186_DNA2)
262
0.00838 0.77696 99.00000
264
t= 0.0084 S= 296.5 N= 1128.5 dN/dS= 99.0000 dN = 0.0035 dS = 0.0000
267
5 (Pmex37_DNA21) ... 3 (Pgra187_DNA2)
269
0.02594 4.03558 0.91514
271
t= 0.0259 S= 348.1 N= 1076.9 dN/dS= 0.9151 dN = 0.0085 dS = 0.0092
274
5 (Pmex37_DNA21) ... 4 (Phet26_DNA21)
276
0.00862 6.08298 0.97563
278
t= 0.0086 S= 362.3 N= 1062.7 dN/dS= 0.9756 dN = 0.0029 dS = 0.0029
281
6 (Ptre197_DNA2) ... 1 (Pdel181_DNA2)
283
0.02585 4.25957 1.53161
285
t= 0.0258 S= 349.5 N= 1075.5 dN/dS= 1.5316 dN = 0.0094 dS = 0.0061
288
6 (Ptre197_DNA2) ... 2 (Pfre186_DNA2)
290
0.02802 4.83643 1.71212
292
t= 0.0280 S= 352.8 N= 1072.2 dN/dS= 1.7121 dN = 0.0104 dS = 0.0061
295
6 (Ptre197_DNA2) ... 3 (Pgra187_DNA2)
297
0.00676 4.05781 0.00100
299
t= 0.0068 S= 345.2 N= 1079.8 dN/dS= 0.0010 dN = 0.0000 dS = 0.0093
302
6 (Ptre197_DNA2) ... 4 (Phet26_DNA21)
304
0.01954 6.78012 0.64571
306
t= 0.0195 S= 361.6 N= 1063.4 dN/dS= 0.6457 dN = 0.0057 dS = 0.0089
309
6 (Ptre197_DNA2) ... 5 (Pmex37_DNA21)
311
0.02372 5.63419 1.43296
313
t= 0.0237 S= 357.2 N= 1067.8 dN/dS= 1.4330 dN = 0.0086 dS = 0.0060
316
7 (WHR1_DNA225) ... 1 (Pdel181_DNA2)
318
0.01511 2.61161 0.72506
320
t= 0.0151 S= 337.6 N= 1087.4 dN/dS= 0.7251 dN = 0.0046 dS = 0.0064
323
7 (WHR1_DNA225) ... 2 (Pfre186_DNA2)
325
0.01725 3.35589 0.90347
327
t= 0.0172 S= 345.7 N= 1079.3 dN/dS= 0.9035 dN = 0.0056 dS = 0.0062
330
7 (WHR1_DNA225) ... 3 (Pgra187_DNA2)
332
0.02624 3.64066 0.41889
334
t= 0.0262 S= 345.9 N= 1079.1 dN/dS= 0.4189 dN = 0.0065 dS = 0.0156
337
7 (WHR1_DNA225) ... 4 (Phet26_DNA21)
339
0.01318 1.68562 0.26826
341
t= 0.0132 S= 322.2 N= 1102.8 dN/dS= 0.2683 dN = 0.0027 dS = 0.0101
344
7 (WHR1_DNA225) ... 5 (Pmex37_DNA21)
346
0.01300 3.82266 0.60956
348
t= 0.0130 S= 350.1 N= 1074.9 dN/dS= 0.6096 dN = 0.0037 dS = 0.0061
351
7 (WHR1_DNA225) ... 6 (Ptre197_DNA2)
353
0.02397 5.04975 0.54692
355
t= 0.0240 S= 355.1 N= 1069.9 dN/dS= 0.5469 dN = 0.0066 dS = 0.0121
358
8 (YALD273_DNA5) ... 1 (Pdel181_DNA2)
360
0.01073 3.11377 1.18654
362
t= 0.0107 S= 342.5 N= 1082.5 dN/dS= 1.1865 dN = 0.0037 dS = 0.0031
365
8 (YALD273_DNA5) ... 2 (Pfre186_DNA2)
367
0.01287 4.25516 1.54964
369
t= 0.0129 S= 352.0 N= 1073.0 dN/dS= 1.5496 dN = 0.0047 dS = 0.0030
372
8 (YALD273_DNA5) ... 3 (Pgra187_DNA2)
374
0.02179 4.30601 0.45869
376
t= 0.0218 S= 349.8 N= 1075.2 dN/dS= 0.4587 dN = 0.0056 dS = 0.0123
379
8 (YALD273_DNA5) ... 4 (Phet26_DNA21)
381
0.00001 8.33165 0.18598
383
t= 0.0000 S= 369.5 N= 1055.5 dN/dS= 0.1860 dN = 0.0000 dS = 0.0000
386
8 (YALD273_DNA5) ... 5 (Pmex37_DNA21)
388
0.00862 6.08296 0.97563
390
t= 0.0086 S= 362.3 N= 1062.7 dN/dS= 0.9756 dN = 0.0029 dS = 0.0029
393
8 (YALD273_DNA5) ... 6 (Ptre197_DNA2)
395
0.01954 6.78014 0.64571
397
t= 0.0195 S= 361.6 N= 1063.4 dN/dS= 0.6457 dN = 0.0057 dS = 0.0089
400
8 (YALD273_DNA5) ... 7 (WHR1_DNA225)
402
0.01318 1.68561 0.26826
404
t= 0.0132 S= 322.2 N= 1102.8 dN/dS= 0.2683 dN = 0.0027 dS = 0.0101
407
9 (Pop_trich_ch) ... 1 (Pdel181_DNA2)
409
0.01073 3.11378 1.18654
411
t= 0.0107 S= 342.5 N= 1082.5 dN/dS= 1.1865 dN = 0.0037 dS = 0.0031
414
9 (Pop_trich_ch) ... 2 (Pfre186_DNA2)
416
0.01287 4.25517 1.54964
418
t= 0.0129 S= 352.0 N= 1073.0 dN/dS= 1.5496 dN = 0.0047 dS = 0.0030
421
9 (Pop_trich_ch) ... 3 (Pgra187_DNA2)
423
0.02179 4.30599 0.45869
425
t= 0.0218 S= 349.8 N= 1075.2 dN/dS= 0.4587 dN = 0.0056 dS = 0.0123
428
9 (Pop_trich_ch) ... 4 (Phet26_DNA21)
430
0.00001 0.40000 0.00100
432
t= 0.0000 S= 281.0 N= 1144.0 dN/dS= 0.0010 dN = 0.0000 dS = 0.0000
435
9 (Pop_trich_ch) ... 5 (Pmex37_DNA21)
437
0.00862 6.08299 0.97562
439
t= 0.0086 S= 362.3 N= 1062.7 dN/dS= 0.9756 dN = 0.0029 dS = 0.0029
442
9 (Pop_trich_ch) ... 6 (Ptre197_DNA2)
444
0.01954 6.78013 0.64571
446
t= 0.0195 S= 361.6 N= 1063.4 dN/dS= 0.6457 dN = 0.0057 dS = 0.0089
449
9 (Pop_trich_ch) ... 7 (WHR1_DNA225)
451
0.01318 1.68561 0.26826
453
t= 0.0132 S= 322.2 N= 1102.8 dN/dS= 0.2683 dN = 0.0027 dS = 0.0101
456
9 (Pop_trich_ch) ... 8 (YALD273_DNA5)
458
0.00001 0.40000 0.16519
460
t= 0.0000 S= 281.0 N= 1144.0 dN/dS= 0.1652 dN = 0.0000 dS = 0.0000
added
removed
t/data/codeml45b.mlc
