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Viewing all changes in revision 4.

Committer: Package Import Robot
Author(s): Steffen Moeller
Date: 2011-11-02 13:29:07 UTC
mfrom: (1.2.1) (3.1.11 natty)
Revision ID: package-import@ubuntu.com-20111102132907-o34gwnt0uj5g6hen

Tags: 1.9.8+repack-1

* First release to Debian
  - added README.Debian
  - increased policy version to 3.9.2
  - added URLs for version control system
* Added debug package.

files added:
data/back_translation

data/back_translation/Bacteria

data/back_translation/Bacteria/Arthrobacter_aurescens_TC1.cut

data/back_translation/Bacteria/Bacillus_subtilis.cut

data/back_translation/Bacteria/Escherichia_coli.cut

data/back_translation/Bacteria/Haemophilus_influenzae.cut

data/back_translation/Bacteria/Helicobacter_pylori.cut

data/back_translation/Bacteria/Listeria_monocytogenes.cut

data/back_translation/Bacteria/Neisseria_meningitidis.cut

data/back_translation/Bacteria/Salmonella_typhimurium_LT2.cut

data/back_translation/Bacteria/Streptomyces_coelicolor_A3(2).cut

data/back_translation/Bacteria/Sulfolobus_solfataricus_P2.cut

data/back_translation/Invertebrates

data/back_translation/Invertebrates/Apis_mellifera_(honey_bee).cut

data/back_translation/Invertebrates/Caenorhabditis_elegans.cut

data/back_translation/Invertebrates/Drosophila_melanogaster_(fruit_fly).cut

data/back_translation/Invertebrates/Plasmodium_falciparum_(malaria_parasite_P._falciparum).cut

data/back_translation/Invertebrates/mitochondrion_Caenorhabditis_elegans.cut

data/back_translation/Invertebrates/mitochondrion_Drosophila_melanogaster_(fruit_fly).cut

data/back_translation/Mammalia

data/back_translation/Mammalia/Bos_taurus_(cow).cut

data/back_translation/Mammalia/Canis_familiaris_(dog).cut

data/back_translation/Mammalia/Sus_scrofa_(pig).cut

data/back_translation/Mammalia/mitochondrion_Bos_taurus_(cow).cut

data/back_translation/Mammalia/mitochondrion_Sus_scrofa_(pig).cut

data/back_translation/Plants

data/back_translation/Plants/Arabidopsis_thaliana_(thale_cress).cut

data/back_translation/Plants/Oryza_sativa.cut

data/back_translation/Plants/Zea_mays.cut

data/back_translation/Primates

data/back_translation/Primates/Homo_sapiens_(human).cut

data/back_translation/Primates/Pan_troglodytes_(chimpanzee).cut

data/back_translation/Primates/mitochondrion_Homo_sapiens_(human).cut

data/back_translation/Primates/mitochondrion_Pan_troglodytes_(chimpanzee).cut

data/back_translation/Rodents

data/back_translation/Rodents/Mus_musculus_(house_mouse).cut

data/back_translation/Rodents/Rattus_norvegicus_(Norway_rat).cut

data/back_translation/Vertebrates

data/back_translation/Vertebrates/Gallus_gallus_(chicken).cut

data/back_translation/Vertebrates/Takifugu_rubripes_(Fugu_rubripes).cut

data/back_translation/Vertebrates/Xenopus_laevis_(African_clawed_frog).cut

data/back_translation/Vertebrates/mitochondrion_Gallus_gallus_(chicken).cut

data/back_translation/Vertebrates/mitochondrion_Takifugu_rubripes_(Fugu_rubripes).cut

data/back_translation/Viruses

data/back_translation/Viruses/Human_immunodeficiency_virus_1_(HIV-1).cut

data/back_translation/Viruses/Influenza_A_virus.cut

data/back_translation/Yeast

data/back_translation/Yeast/Saccharomyces_cerevisiae_(baker's_yeast).cut

data/back_translation/tables.xml

data/biostruct3d_plugin

data/biostruct3d_plugin/BioStruct3DLinks.txt

data/cmdline

data/cmdline/align-clustalw.uwl

data/cmdline/align-kalign.uwl

data/cmdline/align-mafft.uwl

data/cmdline/align-tcoffee.uwl

data/cmdline/align.uwl

data/cmdline/bowtie-build.uwl

data/cmdline/bowtie.uwl

data/cmdline/convert-msa.uwl

data/cmdline/convert-seq.uwl

data/cmdline/extract-sequence.uwl

data/cmdline/fetch-sequence.uwl

data/cmdline/fetch.uwl

data/cmdline/find-orfs.uwl

data/cmdline/find-repeats.uwl

data/cmdline/find-sw.uwl

data/cmdline/generate-dna.uwl

data/cmdline/hmm2-build.uwl

data/cmdline/hmm2-search.uwl

data/cmdline/join-quality.uwl

data/cmdline/local-blast+.uwl

data/cmdline/local-blast.uwl

data/cmdline/pfm-build.uwl

data/cmdline/pfm-search.uwl

data/cmdline/pwm-build.uwl

data/cmdline/pwm-search.uwl

data/cmdline/query.uwl

data/cmdline/remote-request.uwl

data/cmdline/revcompl.uwl

data/cmdline/sitecon-build.uwl

data/cmdline/sitecon-search.uwl

data/enzymes

data/enzymes/rebase_v003_all.bairoch.gz

data/enzymes/rebase_v003_t2_com.bairoch.gz

data/license

data/position_weight_matrix

data/position_weight_matrix/JASPAR

data/position_weight_matrix/JASPAR/all_jaspar.csv

data/position_weight_matrix/JASPAR/fungi

data/position_weight_matrix/JASPAR/fungi/MA0265.1.pfm

data/position_weight_matrix/JASPAR/fungi/MA0266.1.pfm

data/position_weight_matrix/JASPAR/fungi/MA0267.1.pfm

data/position_weight_matrix/JASPAR/fungi/MA0268.1.pfm

data/position_weight_matrix/JASPAR/fungi/MA0269.1.pfm

data/position_weight_matrix/JASPAR/fungi/MA0270.1.pfm

data/position_weight_matrix/JASPAR/fungi/MA0271.1.pfm

data/position_weight_matrix/JASPAR/fungi/MA0272.1.pfm

data/position_weight_matrix/JASPAR/fungi/MA0273.1.pfm

data/position_weight_matrix/JASPAR/fungi/MA0274.1.pfm

data/position_weight_matrix/JASPAR/fungi/MA0275.1.pfm

data/position_weight_matrix/JASPAR/fungi/MA0276.1.pfm

data/position_weight_matrix/JASPAR/fungi/MA0277.1.pfm

data/position_weight_matrix/JASPAR/fungi/MA0278.1.pfm

data/position_weight_matrix/JASPAR/fungi/MA0279.1.pfm

data/position_weight_matrix/JASPAR/fungi/MA0280.1.pfm

data/position_weight_matrix/JASPAR/fungi/MA0281.1.pfm

data/position_weight_matrix/JASPAR/fungi/MA0282.1.pfm

data/position_weight_matrix/JASPAR/fungi/MA0283.1.pfm

data/position_weight_matrix/JASPAR/fungi/MA0284.1.pfm

data/position_weight_matrix/JASPAR/fungi/MA0285.1.pfm

data/position_weight_matrix/JASPAR/fungi/MA0286.1.pfm

data/position_weight_matrix/JASPAR/fungi/MA0287.1.pfm

data/position_weight_matrix/JASPAR/fungi/MA0288.1.pfm

data/position_weight_matrix/JASPAR/fungi/MA0289.1.pfm

data/position_weight_matrix/JASPAR/fungi/MA0290.1.pfm

data/position_weight_matrix/JASPAR/fungi/MA0291.1.pfm

data/position_weight_matrix/JASPAR/fungi/MA0292.1.pfm

data/position_weight_matrix/JASPAR/fungi/MA0293.1.pfm

data/position_weight_matrix/JASPAR/fungi/MA0294.1.pfm

data/position_weight_matrix/JASPAR/fungi/MA0295.1.pfm

data/position_weight_matrix/JASPAR/fungi/MA0296.1.pfm

data/position_weight_matrix/JASPAR/fungi/MA0297.1.pfm

data/position_weight_matrix/JASPAR/fungi/MA0298.1.pfm

data/position_weight_matrix/JASPAR/fungi/MA0299.1.pfm

data/position_weight_matrix/JASPAR/fungi/MA0300.1.pfm

data/position_weight_matrix/JASPAR/fungi/MA0301.1.pfm

data/position_weight_matrix/JASPAR/fungi/MA0302.1.pfm

data/position_weight_matrix/JASPAR/fungi/MA0303.1.pfm

data/position_weight_matrix/JASPAR/fungi/MA0304.1.pfm

data/position_weight_matrix/JASPAR/fungi/MA0305.1.pfm

data/position_weight_matrix/JASPAR/fungi/MA0306.1.pfm

data/position_weight_matrix/JASPAR/fungi/MA0307.1.pfm

data/position_weight_matrix/JASPAR/fungi/MA0308.1.pfm

data/position_weight_matrix/JASPAR/fungi/MA0309.1.pfm

data/position_weight_matrix/JASPAR/fungi/MA0310.1.pfm

data/position_weight_matrix/JASPAR/fungi/MA0311.1.pfm

data/position_weight_matrix/JASPAR/fungi/MA0312.1.pfm

data/position_weight_matrix/JASPAR/fungi/MA0313.1.pfm

data/position_weight_matrix/JASPAR/fungi/MA0314.1.pfm

data/position_weight_matrix/JASPAR/fungi/MA0315.1.pfm

data/position_weight_matrix/JASPAR/fungi/MA0316.1.pfm

data/position_weight_matrix/JASPAR/fungi/MA0317.1.pfm

data/position_weight_matrix/JASPAR/fungi/MA0318.1.pfm

data/position_weight_matrix/JASPAR/fungi/MA0319.1.pfm

data/position_weight_matrix/JASPAR/fungi/MA0320.1.pfm

data/position_weight_matrix/JASPAR/fungi/MA0321.1.pfm

data/position_weight_matrix/JASPAR/fungi/MA0322.1.pfm

data/position_weight_matrix/JASPAR/fungi/MA0323.1.pfm

data/position_weight_matrix/JASPAR/fungi/MA0324.1.pfm

data/position_weight_matrix/JASPAR/fungi/MA0325.1.pfm

data/position_weight_matrix/JASPAR/fungi/MA0326.1.pfm

data/position_weight_matrix/JASPAR/fungi/MA0327.1.pfm

data/position_weight_matrix/JASPAR/fungi/MA0328.1.pfm

data/position_weight_matrix/JASPAR/fungi/MA0329.1.pfm

data/position_weight_matrix/JASPAR/fungi/MA0330.1.pfm

data/position_weight_matrix/JASPAR/fungi/MA0331.1.pfm

data/position_weight_matrix/JASPAR/fungi/MA0332.1.pfm

data/position_weight_matrix/JASPAR/fungi/MA0333.1.pfm

data/position_weight_matrix/JASPAR/fungi/MA0334.1.pfm

data/position_weight_matrix/JASPAR/fungi/MA0335.1.pfm

data/position_weight_matrix/JASPAR/fungi/MA0336.1.pfm

data/position_weight_matrix/JASPAR/fungi/MA0337.1.pfm

data/position_weight_matrix/JASPAR/fungi/MA0338.1.pfm

data/position_weight_matrix/JASPAR/fungi/MA0339.1.pfm

data/position_weight_matrix/JASPAR/fungi/MA0340.1.pfm

data/position_weight_matrix/JASPAR/fungi/MA0341.1.pfm

data/position_weight_matrix/JASPAR/fungi/MA0342.1.pfm

data/position_weight_matrix/JASPAR/fungi/MA0343.1.pfm

data/position_weight_matrix/JASPAR/fungi/MA0344.1.pfm

data/position_weight_matrix/JASPAR/fungi/MA0345.1.pfm

data/position_weight_matrix/JASPAR/fungi/MA0346.1.pfm

data/position_weight_matrix/JASPAR/fungi/MA0347.1.pfm

data/position_weight_matrix/JASPAR/fungi/MA0348.1.pfm

data/position_weight_matrix/JASPAR/fungi/MA0349.1.pfm

data/position_weight_matrix/JASPAR/fungi/MA0350.1.pfm

data/position_weight_matrix/JASPAR/fungi/MA0351.1.pfm

data/position_weight_matrix/JASPAR/fungi/MA0352.1.pfm

data/position_weight_matrix/JASPAR/fungi/MA0353.1.pfm

data/position_weight_matrix/JASPAR/fungi/MA0354.1.pfm

data/position_weight_matrix/JASPAR/fungi/MA0355.1.pfm

data/position_weight_matrix/JASPAR/fungi/MA0356.1.pfm

data/position_weight_matrix/JASPAR/fungi/MA0357.1.pfm

data/position_weight_matrix/JASPAR/fungi/MA0358.1.pfm

data/position_weight_matrix/JASPAR/fungi/MA0359.1.pfm

data/position_weight_matrix/JASPAR/fungi/MA0360.1.pfm

data/position_weight_matrix/JASPAR/fungi/MA0361.1.pfm

data/position_weight_matrix/JASPAR/fungi/MA0362.1.pfm

data/position_weight_matrix/JASPAR/fungi/MA0363.1.pfm

data/position_weight_matrix/JASPAR/fungi/MA0364.1.pfm

data/position_weight_matrix/JASPAR/fungi/MA0365.1.pfm

data/position_weight_matrix/JASPAR/fungi/MA0366.1.pfm

data/position_weight_matrix/JASPAR/fungi/MA0367.1.pfm

data/position_weight_matrix/JASPAR/fungi/MA0368.1.pfm

data/position_weight_matrix/JASPAR/fungi/MA0369.1.pfm

data/position_weight_matrix/JASPAR/fungi/MA0370.1.pfm

data/position_weight_matrix/JASPAR/fungi/MA0371.1.pfm

data/position_weight_matrix/JASPAR/fungi/MA0372.1.pfm

data/position_weight_matrix/JASPAR/fungi/MA0373.1.pfm

data/position_weight_matrix/JASPAR/fungi/MA0374.1.pfm

data/position_weight_matrix/JASPAR/fungi/MA0375.1.pfm

data/position_weight_matrix/JASPAR/fungi/MA0376.1.pfm

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data/position_weight_matrix/JASPAR/fungi/MA0380.1.pfm

data/position_weight_matrix/JASPAR/fungi/MA0381.1.pfm

data/position_weight_matrix/JASPAR/fungi/MA0382.1.pfm

data/position_weight_matrix/JASPAR/fungi/MA0383.1.pfm

data/position_weight_matrix/JASPAR/fungi/MA0384.1.pfm

data/position_weight_matrix/JASPAR/fungi/MA0385.1.pfm

data/position_weight_matrix/JASPAR/fungi/MA0386.1.pfm

data/position_weight_matrix/JASPAR/fungi/MA0387.1.pfm

data/position_weight_matrix/JASPAR/fungi/MA0388.1.pfm

data/position_weight_matrix/JASPAR/fungi/MA0389.1.pfm

data/position_weight_matrix/JASPAR/fungi/MA0390.1.pfm

data/position_weight_matrix/JASPAR/fungi/MA0391.1.pfm

data/position_weight_matrix/JASPAR/fungi/MA0392.1.pfm

data/position_weight_matrix/JASPAR/fungi/MA0393.1.pfm

data/position_weight_matrix/JASPAR/fungi/MA0394.1.pfm

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data/position_weight_matrix/JASPAR/fungi/MA0396.1.pfm

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data/position_weight_matrix/JASPAR/fungi/MA0398.1.pfm

data/position_weight_matrix/JASPAR/fungi/MA0399.1.pfm

data/position_weight_matrix/JASPAR/fungi/MA0400.1.pfm

data/position_weight_matrix/JASPAR/fungi/MA0401.1.pfm

data/position_weight_matrix/JASPAR/fungi/MA0402.1.pfm

data/position_weight_matrix/JASPAR/fungi/MA0403.1.pfm

data/position_weight_matrix/JASPAR/fungi/MA0404.1.pfm

data/position_weight_matrix/JASPAR/fungi/MA0405.1.pfm

data/position_weight_matrix/JASPAR/fungi/MA0406.1.pfm

data/position_weight_matrix/JASPAR/fungi/MA0407.1.pfm

data/position_weight_matrix/JASPAR/fungi/MA0408.1.pfm

data/position_weight_matrix/JASPAR/fungi/MA0409.1.pfm

data/position_weight_matrix/JASPAR/fungi/MA0410.1.pfm

data/position_weight_matrix/JASPAR/fungi/MA0411.1.pfm

data/position_weight_matrix/JASPAR/fungi/MA0412.1.pfm

data/position_weight_matrix/JASPAR/fungi/MA0413.1.pfm

data/position_weight_matrix/JASPAR/fungi/MA0414.1.pfm

data/position_weight_matrix/JASPAR/fungi/MA0415.1.pfm

data/position_weight_matrix/JASPAR/fungi/MA0416.1.pfm

data/position_weight_matrix/JASPAR/fungi/MA0417.1.pfm

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data/position_weight_matrix/JASPAR/fungi/MA0419.1.pfm

data/position_weight_matrix/JASPAR/fungi/MA0420.1.pfm

data/position_weight_matrix/JASPAR/fungi/MA0421.1.pfm

data/position_weight_matrix/JASPAR/fungi/MA0422.1.pfm

data/position_weight_matrix/JASPAR/fungi/MA0423.1.pfm

data/position_weight_matrix/JASPAR/fungi/MA0424.1.pfm

data/position_weight_matrix/JASPAR/fungi/MA0425.1.pfm

data/position_weight_matrix/JASPAR/fungi/MA0426.1.pfm

data/position_weight_matrix/JASPAR/fungi/MA0427.1.pfm

data/position_weight_matrix/JASPAR/fungi/MA0428.1.pfm

data/position_weight_matrix/JASPAR/fungi/MA0429.1.pfm

data/position_weight_matrix/JASPAR/fungi/MA0430.1.pfm

data/position_weight_matrix/JASPAR/fungi/MA0431.1.pfm

data/position_weight_matrix/JASPAR/fungi/MA0432.1.pfm

data/position_weight_matrix/JASPAR/fungi/MA0433.1.pfm

data/position_weight_matrix/JASPAR/fungi/MA0434.1.pfm

data/position_weight_matrix/JASPAR/fungi/MA0435.1.pfm

data/position_weight_matrix/JASPAR/fungi/MA0436.1.pfm

data/position_weight_matrix/JASPAR/fungi/MA0437.1.pfm

data/position_weight_matrix/JASPAR/fungi/MA0438.1.pfm

data/position_weight_matrix/JASPAR/fungi/MA0439.1.pfm

data/position_weight_matrix/JASPAR/fungi/MA0440.1.pfm

data/position_weight_matrix/JASPAR/fungi/MA0441.1.pfm

data/position_weight_matrix/JASPAR/fungi/matrix_list.txt

data/position_weight_matrix/JASPAR/insects

data/position_weight_matrix/JASPAR/insects/MA0265.1.pfm

data/position_weight_matrix/JASPAR/insects/MA0266.1.pfm

data/position_weight_matrix/JASPAR/insects/MA0267.1.pfm

data/position_weight_matrix/JASPAR/insects/MA0268.1.pfm

data/position_weight_matrix/JASPAR/insects/MA0269.1.pfm

data/position_weight_matrix/JASPAR/insects/MA0270.1.pfm

data/position_weight_matrix/JASPAR/insects/MA0271.1.pfm

data/position_weight_matrix/JASPAR/insects/MA0272.1.pfm

data/position_weight_matrix/JASPAR/insects/MA0273.1.pfm

data/position_weight_matrix/JASPAR/insects/MA0274.1.pfm

data/position_weight_matrix/JASPAR/insects/MA0275.1.pfm

data/position_weight_matrix/JASPAR/insects/MA0276.1.pfm

data/position_weight_matrix/JASPAR/insects/MA0277.1.pfm

data/position_weight_matrix/JASPAR/insects/MA0278.1.pfm

data/position_weight_matrix/JASPAR/insects/MA0279.1.pfm

data/position_weight_matrix/JASPAR/insects/MA0280.1.pfm

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data/position_weight_matrix/JASPAR/insects/MA0282.1.pfm

data/position_weight_matrix/JASPAR/insects/MA0283.1.pfm

data/position_weight_matrix/JASPAR/insects/MA0284.1.pfm

data/position_weight_matrix/JASPAR/insects/MA0285.1.pfm

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data/position_weight_matrix/JASPAR/insects/MA0293.1.pfm

data/position_weight_matrix/JASPAR/insects/MA0294.1.pfm

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data/position_weight_matrix/JASPAR/insects/MA0298.1.pfm

data/position_weight_matrix/JASPAR/insects/MA0299.1.pfm

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data/position_weight_matrix/JASPAR/insects/MA0301.1.pfm

data/position_weight_matrix/JASPAR/insects/MA0302.1.pfm

data/position_weight_matrix/JASPAR/insects/MA0303.1.pfm

data/position_weight_matrix/JASPAR/insects/MA0304.1.pfm

data/position_weight_matrix/JASPAR/insects/MA0305.1.pfm

data/position_weight_matrix/JASPAR/insects/MA0306.1.pfm

data/position_weight_matrix/JASPAR/insects/MA0307.1.pfm

data/position_weight_matrix/JASPAR/insects/MA0308.1.pfm

data/position_weight_matrix/JASPAR/insects/MA0309.1.pfm

data/position_weight_matrix/JASPAR/insects/MA0310.1.pfm

data/position_weight_matrix/JASPAR/insects/MA0311.1.pfm

data/position_weight_matrix/JASPAR/insects/MA0312.1.pfm

data/position_weight_matrix/JASPAR/insects/MA0313.1.pfm

data/position_weight_matrix/JASPAR/insects/MA0314.1.pfm

data/position_weight_matrix/JASPAR/insects/MA0315.1.pfm

data/position_weight_matrix/JASPAR/insects/MA0316.1.pfm

data/position_weight_matrix/JASPAR/insects/MA0317.1.pfm

data/position_weight_matrix/JASPAR/insects/MA0318.1.pfm

data/position_weight_matrix/JASPAR/insects/MA0319.1.pfm

data/position_weight_matrix/JASPAR/insects/MA0320.1.pfm

data/position_weight_matrix/JASPAR/insects/MA0321.1.pfm

data/position_weight_matrix/JASPAR/insects/MA0322.1.pfm

data/position_weight_matrix/JASPAR/insects/MA0323.1.pfm

data/position_weight_matrix/JASPAR/insects/MA0324.1.pfm

data/position_weight_matrix/JASPAR/insects/MA0325.1.pfm

data/position_weight_matrix/JASPAR/insects/MA0326.1.pfm

data/position_weight_matrix/JASPAR/insects/MA0327.1.pfm

data/position_weight_matrix/JASPAR/insects/MA0328.1.pfm

data/position_weight_matrix/JASPAR/insects/MA0329.1.pfm

data/position_weight_matrix/JASPAR/insects/MA0330.1.pfm

data/position_weight_matrix/JASPAR/insects/MA0331.1.pfm

data/position_weight_matrix/JASPAR/insects/MA0332.1.pfm

data/position_weight_matrix/JASPAR/insects/MA0333.1.pfm

data/position_weight_matrix/JASPAR/insects/MA0334.1.pfm

data/position_weight_matrix/JASPAR/insects/MA0335.1.pfm

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data/position_weight_matrix/UniPROBE

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data/position_weight_matrix/UniPROBE/Cell08/Homez_1063.2.pwm

data/position_weight_matrix/UniPROBE/Cell08/Hoxa10_2318.1.pwm

data/position_weight_matrix/UniPROBE/Cell08/Hoxa11_2218.1.pwm

data/position_weight_matrix/UniPROBE/Cell08/Hoxa13_3126.1.pwm

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data/position_weight_matrix/UniPROBE/Cell08/Hoxa4_3426.1.pwm

data/position_weight_matrix/UniPROBE/Cell08/Hoxa5_3415.1.pwm

data/position_weight_matrix/UniPROBE/Cell08/Hoxa6_1040.1.pwm

data/position_weight_matrix/UniPROBE/Cell08/Hoxa7_2668.2.pwm

data/position_weight_matrix/UniPROBE/Cell08/Hoxa7_3750.1.pwm

data/position_weight_matrix/UniPROBE/Cell08/Hoxa9_2622.2.pwm

data/position_weight_matrix/UniPROBE/Cell08/Hoxb13_3479.1.pwm

data/position_weight_matrix/UniPROBE/Cell08/Hoxb3_1720.2.pwm

data/position_weight_matrix/UniPROBE/Cell08/Hoxb4_2627.1.pwm

data/position_weight_matrix/UniPROBE/Cell08/Hoxb5_3122.2.pwm

data/position_weight_matrix/UniPROBE/Cell08/Hoxb6_3428.2.pwm

data/position_weight_matrix/UniPROBE/Cell08/Hoxb7_3953.1.pwm

data/position_weight_matrix/UniPROBE/Cell08/Hoxb8_3780.2.pwm

data/position_weight_matrix/UniPROBE/Cell08/Hoxb9_3413.1.pwm

data/position_weight_matrix/UniPROBE/Cell08/Hoxc10_2779.2.pwm

data/position_weight_matrix/UniPROBE/Cell08/Hoxc11_3718.2.pwm

data/position_weight_matrix/UniPROBE/Cell08/Hoxc12_3480.1.pwm

data/position_weight_matrix/UniPROBE/Cell08/Hoxc13_3127.1.pwm

data/position_weight_matrix/UniPROBE/Cell08/Hoxc4_3491.1.pwm

data/position_weight_matrix/UniPROBE/Cell08/Hoxc5_2630.2.pwm

data/position_weight_matrix/UniPROBE/Cell08/Hoxc6_3954.2.pwm

data/position_weight_matrix/UniPROBE/Cell08/Hoxc8_3429.2.pwm

data/position_weight_matrix/UniPROBE/Cell08/Hoxc9_2367.2.pwm

data/position_weight_matrix/UniPROBE/Cell08/Hoxd10_2368.2.pwm

data/position_weight_matrix/UniPROBE/Cell08/Hoxd11_3873.1.pwm

data/position_weight_matrix/UniPROBE/Cell08/Hoxd12_3481.1.pwm

data/position_weight_matrix/UniPROBE/Cell08/Hoxd13_2356.1.pwm

data/position_weight_matrix/UniPROBE/Cell08/Hoxd1_3448.1.pwm

data/position_weight_matrix/UniPROBE/Cell08/Hoxd3_1742.2.pwm

data/position_weight_matrix/UniPROBE/Cell08/Hoxd8_2644.1.pwm

data/position_weight_matrix/UniPROBE/Cell08/Ipf1_3815.1.pwm

data/position_weight_matrix/UniPROBE/Cell08/Irx2_0900.3.pwm

data/position_weight_matrix/UniPROBE/Cell08/Irx3_0920.1.pwm

data/position_weight_matrix/UniPROBE/Cell08/Irx3_2226.1.pwm

data/position_weight_matrix/UniPROBE/Cell08/Irx4_2242.3.pwm

data/position_weight_matrix/UniPROBE/Cell08/Irx5_2385.1.pwm

data/position_weight_matrix/UniPROBE/Cell08/Irx6_2623.2.pwm

data/position_weight_matrix/UniPROBE/Cell08/Isl2_3430.1.pwm

data/position_weight_matrix/UniPROBE/Cell08/Isx_3445.1.pwm

data/position_weight_matrix/UniPROBE/Cell08/Lbx2_3869.2.pwm

data/position_weight_matrix/UniPROBE/Cell08/Lhx1_2240.2.pwm

data/position_weight_matrix/UniPROBE/Cell08/Lhx2_0953.2.pwm

data/position_weight_matrix/UniPROBE/Cell08/Lhx3_3431.1.pwm

data/position_weight_matrix/UniPROBE/Cell08/Lhx4_1719.2.pwm

data/position_weight_matrix/UniPROBE/Cell08/Lhx5_2279.1.pwm

data/position_weight_matrix/UniPROBE/Cell08/Lhx6_2272.1.pwm

data/position_weight_matrix/UniPROBE/Cell08/Lhx6_3432.1.pwm

data/position_weight_matrix/UniPROBE/Cell08/Lhx8_2247.2.pwm

data/position_weight_matrix/UniPROBE/Cell08/Lhx9_3492.1.pwm

data/position_weight_matrix/UniPROBE/Cell08/Lmx1a_2238.2.pwm

data/position_weight_matrix/UniPROBE/Cell08/Lmx1b_3433.2.pwm

data/position_weight_matrix/UniPROBE/Cell08/Meis1_2335.1.pwm

data/position_weight_matrix/UniPROBE/Cell08/Meox1_2310.2.pwm

data/position_weight_matrix/UniPROBE/Cell08/Mrg1_2246.2.pwm

data/position_weight_matrix/UniPROBE/Cell08/Mrg2_2302.1.pwm

data/position_weight_matrix/UniPROBE/Cell08/Msx1_3031.2.pwm

data/position_weight_matrix/UniPROBE/Cell08/Msx2_3449.1.pwm

data/position_weight_matrix/UniPROBE/Cell08/Msx3_3206.1.pwm

data/position_weight_matrix/UniPROBE/Cell08/Nkx1-1_3856.3.pwm

data/position_weight_matrix/UniPROBE/Cell08/Nkx1-2_3214.1.pwm

data/position_weight_matrix/UniPROBE/Cell08/Nkx2-2_2823.1.pwm

data/position_weight_matrix/UniPROBE/Cell08/Nkx2-3_3435.1.pwm

data/position_weight_matrix/UniPROBE/Cell08/Nkx2-4_3074.1.pwm

data/position_weight_matrix/UniPROBE/Cell08/Nkx2-5_3436.1.pwm

data/position_weight_matrix/UniPROBE/Cell08/Nkx2-6_3437.1.pwm

data/position_weight_matrix/UniPROBE/Cell08/Nkx2-9_3082.1.pwm

data/position_weight_matrix/UniPROBE/Cell08/Nkx3-1_2923.2.pwm

data/position_weight_matrix/UniPROBE/Cell08/Nkx6-1_2825.1.pwm

data/position_weight_matrix/UniPROBE/Cell08/Nkx6-1_2825.2.pwm

data/position_weight_matrix/UniPROBE/Cell08/Nkx6-3_3446.1.pwm

data/position_weight_matrix/UniPROBE/Cell08/Obox1_3970.2.pwm

data/position_weight_matrix/UniPROBE/Cell08/Obox2_3438.2.pwm

data/position_weight_matrix/UniPROBE/Cell08/Obox3_3439.1.pwm

data/position_weight_matrix/UniPROBE/Cell08/Obox5_2284.1.pwm

data/position_weight_matrix/UniPROBE/Cell08/Obox5_3963.2.pwm

data/position_weight_matrix/UniPROBE/Cell08/Obox6_3440.2.pwm

data/position_weight_matrix/UniPROBE/Cell08/Og2x_3719.1.pwm

data/position_weight_matrix/UniPROBE/Cell08/Otp_3496.1.pwm

data/position_weight_matrix/UniPROBE/Cell08/Otx1_2325.1.pwm

data/position_weight_matrix/UniPROBE/Cell08/Otx2_3441.1.pwm

data/position_weight_matrix/UniPROBE/Cell08/Pax4_3989.2.pwm

data/position_weight_matrix/UniPROBE/Cell08/Pax6_3838.3.pwm

data/position_weight_matrix/UniPROBE/Cell08/Pax7_3783.1.pwm

data/position_weight_matrix/UniPROBE/Cell08/Pbx1_3203.1.pwm

data/position_weight_matrix/UniPROBE/Cell08/Phox2a_3947.1.pwm

data/position_weight_matrix/UniPROBE/Cell08/Phox2b_3948.1.pwm

data/position_weight_matrix/UniPROBE/Cell08/Pitx1_2312.1.pwm

data/position_weight_matrix/UniPROBE/Cell08/Pitx2_2274.3.pwm

data/position_weight_matrix/UniPROBE/Cell08/Pitx3_3497.2.pwm

data/position_weight_matrix/UniPROBE/Cell08/Pknox1_2364.2.pwm

data/position_weight_matrix/UniPROBE/Cell08/Pknox2_3077.2.pwm

data/position_weight_matrix/UniPROBE/Cell08/Pou1f1_3818.1.pwm

data/position_weight_matrix/UniPROBE/Cell08/Pou2f1_3081.2.pwm

data/position_weight_matrix/UniPROBE/Cell08/Pou2f2_3748.1.pwm

data/position_weight_matrix/UniPROBE/Cell08/Pou2f3_3986.2.pwm

data/position_weight_matrix/UniPROBE/Cell08/Pou3f1_3819.1.pwm

data/position_weight_matrix/UniPROBE/Cell08/Pou3f2_2824.1.pwm

data/position_weight_matrix/UniPROBE/Cell08/Pou3f3_3235.2.pwm

data/position_weight_matrix/UniPROBE/Cell08/Pou3f4_3773.1.pwm

data/position_weight_matrix/UniPROBE/Cell08/Pou4f3_2791.1.pwm

data/position_weight_matrix/UniPROBE/Cell08/Pou6f1_1731.2.pwm

data/position_weight_matrix/UniPROBE/Cell08/Pou6f1_3733.1.pwm

data/position_weight_matrix/UniPROBE/Cell08/Prop1_3949.1.pwm

data/position_weight_matrix/UniPROBE/Cell08/Prrx1_3442.1.pwm

data/position_weight_matrix/UniPROBE/Cell08/Prrx2_3072.1.pwm

data/position_weight_matrix/UniPROBE/Cell08/Rax_3443.1.pwm

data/position_weight_matrix/UniPROBE/Cell08/Rhox11_1765.2.pwm

data/position_weight_matrix/UniPROBE/Cell08/Rhox11_2205.1.pwm

data/position_weight_matrix/UniPROBE/Cell08/Rhox6_4251.1.pwm

data/position_weight_matrix/UniPROBE/Cell08/Shox2_2641.2.pwm

data/position_weight_matrix/UniPROBE/Cell08/Six1_0935.2.pwm

data/position_weight_matrix/UniPROBE/Cell08/Six2_2307.2.pwm

data/position_weight_matrix/UniPROBE/Cell08/Six3_1732.2.pwm

data/position_weight_matrix/UniPROBE/Cell08/Six4_2860.1.pwm

data/position_weight_matrix/UniPROBE/Cell08/Six6_2267.4.pwm

data/position_weight_matrix/UniPROBE/Cell08/Six6_2267.5.pwm

data/position_weight_matrix/UniPROBE/Cell08/Tcf1_2666.2.pwm

data/position_weight_matrix/UniPROBE/Cell08/Tcf2_0913.2.pwm

data/position_weight_matrix/UniPROBE/Cell08/Tgif1_2342.2.pwm

data/position_weight_matrix/UniPROBE/Cell08/Tgif2_3451.1.pwm

data/position_weight_matrix/UniPROBE/Cell08/Titf1_1722.2.pwm

data/position_weight_matrix/UniPROBE/Cell08/Tlx2_3498.2.pwm

data/position_weight_matrix/UniPROBE/Cell08/Uncx4.1_2281.2.pwm

data/position_weight_matrix/UniPROBE/Cell08/Vax1_3499.1.pwm

data/position_weight_matrix/UniPROBE/Cell08/Vax2_3500.1.pwm

data/position_weight_matrix/UniPROBE/Cell08/Vsx1_1728.1.pwm

data/position_weight_matrix/UniPROBE/GR09

data/position_weight_matrix/UniPROBE/GR09/Aft1.pwm

data/position_weight_matrix/UniPROBE/GR09/Aro80.pwm

data/position_weight_matrix/UniPROBE/GR09/Asg1.pwm

data/position_weight_matrix/UniPROBE/GR09/Bas1.pwm

data/position_weight_matrix/UniPROBE/GR09/Cbf1.pwm

data/position_weight_matrix/UniPROBE/GR09/Cep3.pwm

data/position_weight_matrix/UniPROBE/GR09/Cha4.pwm

data/position_weight_matrix/UniPROBE/GR09/Cup9.pwm

data/position_weight_matrix/UniPROBE/GR09/Ecm22.pwm

data/position_weight_matrix/UniPROBE/GR09/Fhl1.pwm

data/position_weight_matrix/UniPROBE/GR09/Fkh1.pwm

data/position_weight_matrix/UniPROBE/GR09/Fkh2.pwm

data/position_weight_matrix/UniPROBE/GR09/Gal4.pwm

data/position_weight_matrix/UniPROBE/GR09/Gat1.pwm

data/position_weight_matrix/UniPROBE/GR09/Gat3.pwm

data/position_weight_matrix/UniPROBE/GR09/Gat4.pwm

data/position_weight_matrix/UniPROBE/GR09/Gcn4.pwm

data/position_weight_matrix/UniPROBE/GR09/Gln3.pwm

data/position_weight_matrix/UniPROBE/GR09/Gsm1.pwm

data/position_weight_matrix/UniPROBE/GR09/Gzf3.pwm

data/position_weight_matrix/UniPROBE/GR09/Hal9.pwm

data/position_weight_matrix/UniPROBE/GR09/Leu3.pwm

data/position_weight_matrix/UniPROBE/GR09/Lys14.pwm

data/position_weight_matrix/UniPROBE/GR09/Matalpha2.pwm

data/position_weight_matrix/UniPROBE/GR09/Mbp1.pwm

data/position_weight_matrix/UniPROBE/GR09/Mcm1.pwm

data/position_weight_matrix/UniPROBE/GR09/Met32.pwm

data/position_weight_matrix/UniPROBE/GR09/Mga1.pwm

data/position_weight_matrix/UniPROBE/GR09/Mig1.pwm

data/position_weight_matrix/UniPROBE/GR09/Mig2.pwm

data/position_weight_matrix/UniPROBE/GR09/Mig3.pwm

data/position_weight_matrix/UniPROBE/GR09/Ndt80.pwm

data/position_weight_matrix/UniPROBE/GR09/Nhp6a.pwm

data/position_weight_matrix/UniPROBE/GR09/Nhp6b.pwm

data/position_weight_matrix/UniPROBE/GR09/Nrg1.pwm

data/position_weight_matrix/UniPROBE/GR09/Oaf1.pwm

data/position_weight_matrix/UniPROBE/GR09/Pbf1.pwm

data/position_weight_matrix/UniPROBE/GR09/Pbf2.pwm

data/position_weight_matrix/UniPROBE/GR09/Pdr1.pwm

data/position_weight_matrix/UniPROBE/GR09/Phd1.pwm

data/position_weight_matrix/UniPROBE/GR09/Pho2.pwm

data/position_weight_matrix/UniPROBE/GR09/Pho4.pwm

data/position_weight_matrix/UniPROBE/GR09/Put3.pwm

data/position_weight_matrix/UniPROBE/GR09/Rap1.pwm

data/position_weight_matrix/UniPROBE/GR09/Rdr1.pwm

data/position_weight_matrix/UniPROBE/GR09/Rds1.pwm

data/position_weight_matrix/UniPROBE/GR09/Rds2.pwm

data/position_weight_matrix/UniPROBE/GR09/Rgt1.pwm

data/position_weight_matrix/UniPROBE/GR09/Rph1.pwm

data/position_weight_matrix/UniPROBE/GR09/Rpn4.pwm

data/position_weight_matrix/UniPROBE/GR09/Rsc3.pwm

data/position_weight_matrix/UniPROBE/GR09/Rsc30.pwm

data/position_weight_matrix/UniPROBE/GR09/Rtg3.pwm

data/position_weight_matrix/UniPROBE/GR09/Sfl1.pwm

data/position_weight_matrix/UniPROBE/GR09/Sfp1.pwm

data/position_weight_matrix/UniPROBE/GR09/Sip4.pwm

data/position_weight_matrix/UniPROBE/GR09/Skn7.pwm

data/position_weight_matrix/UniPROBE/GR09/Smp1.pwm

data/position_weight_matrix/UniPROBE/GR09/Spt15.pwm

data/position_weight_matrix/UniPROBE/GR09/Srd1.pwm

data/position_weight_matrix/UniPROBE/GR09/Stb3.pwm

data/position_weight_matrix/UniPROBE/GR09/Stp2.pwm

data/position_weight_matrix/UniPROBE/GR09/Stp4.pwm

data/position_weight_matrix/UniPROBE/GR09/Sum1.pwm

data/position_weight_matrix/UniPROBE/GR09/Sut2.pwm

data/position_weight_matrix/UniPROBE/GR09/Tbf1.pwm

data/position_weight_matrix/UniPROBE/GR09/Tbs1.pwm

data/position_weight_matrix/UniPROBE/GR09/Tea1.pwm

data/position_weight_matrix/UniPROBE/GR09/Tec1.pwm

data/position_weight_matrix/UniPROBE/GR09/Tye7.pwm

data/position_weight_matrix/UniPROBE/GR09/Ume6.pwm

data/position_weight_matrix/UniPROBE/GR09/Usv1.pwm

data/position_weight_matrix/UniPROBE/GR09/Xbp1.pwm

data/position_weight_matrix/UniPROBE/GR09/Yap1.pwm

data/position_weight_matrix/UniPROBE/GR09/Yap6.pwm

data/position_weight_matrix/UniPROBE/GR09/Ybr239c.pwm

data/position_weight_matrix/UniPROBE/GR09/Ydr520c.pwm

data/position_weight_matrix/UniPROBE/GR09/Yer130c.pwm

data/position_weight_matrix/UniPROBE/GR09/Ygr067c.pwm

data/position_weight_matrix/UniPROBE/GR09/Ykl222c.pwm

data/position_weight_matrix/UniPROBE/GR09/Yll054c.pwm

data/position_weight_matrix/UniPROBE/GR09/Yml081w.pwm

data/position_weight_matrix/UniPROBE/GR09/Ynr063w.pwm

data/position_weight_matrix/UniPROBE/GR09/Yox1.pwm

data/position_weight_matrix/UniPROBE/GR09/Ypr013c.pwm

data/position_weight_matrix/UniPROBE/GR09/Ypr015c.pwm

data/position_weight_matrix/UniPROBE/GR09/Ypr196w.pwm

data/position_weight_matrix/UniPROBE/GR09/Yrm1.pwm

data/position_weight_matrix/UniPROBE/GR09/Yrr1.pwm

data/position_weight_matrix/UniPROBE/NBT06

data/position_weight_matrix/UniPROBE/NBT06/Cbf1.pwm

data/position_weight_matrix/UniPROBE/NBT06/Ceh-22.pwm

data/position_weight_matrix/UniPROBE/NBT06/Oct-1.pwm

data/position_weight_matrix/UniPROBE/NBT06/Rap1.pwm

data/position_weight_matrix/UniPROBE/NBT06/Zif268.pwm

data/position_weight_matrix/UniPROBE/PNAS08

data/position_weight_matrix/UniPROBE/PNAS08/Cgd2_3490.pwm

data/position_weight_matrix/UniPROBE/PNAS08/PF14_0633.pwm

data/position_weight_matrix/UniPROBE/PNAS08/PFF0200c.pwm

data/position_weight_matrix/UniPROBE/all_uniprobe.csv

data/primer3

data/primer3/drosophila.w.transposons.txt

data/primer3/humrep_and_simple.txt

data/primer3/rodent_ref.txt

data/primer3/rodrep_and_simple.txt

data/query_samples

data/query_samples/RepeatsWithORF.uql

data/query_samples/SimpleGene.uql

data/samples/ABIF

data/samples/ABIF/A01.abi

data/samples/ACE

data/samples/ACE/BL060C3.ace

data/samples/ACE/K26.ace

data/samples/CLUSTALW

data/samples/CLUSTALW/COI.aln

data/samples/CLUSTALW/HIV-1.aln

data/samples/CLUSTALW/ty3.aln.gz

data/samples/EMBL

data/samples/EMBL/AF177870.emb

data/samples/EMBL/AL000263.emb

data/samples/FASTA

data/samples/FASTA/human_T1.fa

data/samples/FASTQ

data/samples/FASTQ/eas.fastq

data/samples/GFF

data/samples/GFF/5prime_utr_intron_A20.gff

data/samples/GFF/5prime_utr_intron_A21.gff

data/samples/Genbank

data/samples/Genbank/CVU55762.gb

data/samples/Genbank/NC_014267.1.gb

data/samples/Genbank/PBR322 .gb

data/samples/Genbank/murine.gb

data/samples/Genbank/sars.gb

data/samples/HMM

data/samples/HMM/aligment15900.hmm

data/samples/MMDB

data/samples/MMDB/1CRN.prt

data/samples/MMDB/2JQS.prt

data/samples/MSF

data/samples/MSF/HMA.msf

data/samples/MSF/lipid8.msf

data/samples/MSF/pla2_20.msf

data/samples/Newick

data/samples/Newick/COI.nwk

data/samples/PDB

data/samples/PDB/1CF7.PDB

data/samples/PDB/1CRN.PDB

data/samples/PDB/3INS.PDB

data/samples/Raw

data/samples/Raw/raw.seq

data/samples/SCF

data/samples/SCF/90-JRI-07.scf

data/samples/Stockholm

data/samples/Stockholm/CBS.sto

data/samples/Stockholm/UPSK.sto

data/samples/Swiss-Prot

data/samples/Swiss-Prot/D0VTW9.txt

data/samples/Swiss-Prot/P01375.txt

data/samples/Swiss-Prot/P16152.txt

data/schemas_private

data/schemas_private/bowtie-build.uwl

data/schemas_private/bowtie.uwl

data/schemas_private/kalign.uwl

data/schemas_private/muscle.uwl

data/sitecon_models/eukaryotic

data/sitecon_models/eukaryotic/CEBP_a.sitecon.gz

data/sitecon_models/eukaryotic/CEBPall.sitecon.gz

data/sitecon_models/eukaryotic/CLOCK.sitecon.gz

data/sitecon_models/eukaryotic/CRE.sitecon.gz

data/sitecon_models/eukaryotic/E2F1.sitecon.gz

data/sitecon_models/eukaryotic/E2F1DP1sel1.sitecon.gz

data/sitecon_models/eukaryotic/EGR1.sitecon.gz

data/sitecon_models/eukaryotic/Eklf.sitecon.gz

data/sitecon_models/eukaryotic/GATA1.sitecon.gz

data/sitecon_models/eukaryotic/GATA_ALL.sitecon.gz

data/sitecon_models/eukaryotic/Gata2.sitecon.gz

data/sitecon_models/eukaryotic/Gata3.sitecon.gz

data/sitecon_models/eukaryotic/HMG1.sitecon.gz

data/sitecon_models/eukaryotic/HNF1.sitecon.gz

data/sitecon_models/eukaryotic/HNF3_4.sitecon.gz

data/sitecon_models/eukaryotic/HNF4.sitecon.gz

data/sitecon_models/eukaryotic/MYOGsel3.sitecon.gz

data/sitecon_models/eukaryotic/MyoD.sitecon.gz

data/sitecon_models/eukaryotic/NF1.sitecon.gz

data/sitecon_models/eukaryotic/NFATp.sitecon.gz

data/sitecon_models/eukaryotic/NFkB_all.sitecon.gz

data/sitecon_models/eukaryotic/NFkB_hetero.sitecon.gz

data/sitecon_models/eukaryotic/NFkB_homo.sitecon.gz

data/sitecon_models/eukaryotic/Nf_e2.sitecon.gz

data/sitecon_models/eukaryotic/Nrf2.sitecon.gz

data/sitecon_models/eukaryotic/Oct1.sitecon.gz

data/sitecon_models/eukaryotic/Oct_all.sitecon.gz

data/sitecon_models/eukaryotic/PPRE.sitecon.gz

data/sitecon_models/eukaryotic/Pu1.sitecon.gz

data/sitecon_models/eukaryotic/SRE_can.sitecon.gz

data/sitecon_models/eukaryotic/STAT.sitecon.gz

data/sitecon_models/eukaryotic/STAT1.sitecon.gz

data/sitecon_models/eukaryotic/TTF1.sitecon.gz

data/sitecon_models/eukaryotic/USF.sitecon.gz

data/sitecon_models/eukaryotic/cMyc_can.sitecon.gz

data/sitecon_models/eukaryotic/er2.sitecon.gz

data/sitecon_models/eukaryotic/irf.sitecon.gz

data/sitecon_models/eukaryotic/isre.sitecon.gz

data/sitecon_models/eukaryotic/nfy.sitecon.gz

data/sitecon_models/eukaryotic/p53.sitecon.gz

data/sitecon_models/eukaryotic/setCREB.sitecon.gz

data/sitecon_models/eukaryotic/setCREBzag.sitecon.gz

data/sitecon_models/eukaryotic/srf_all.sitecon.gz

data/sitecon_models/eukaryotic/yy1.sitecon.gz

data/sitecon_models/prokaryotic

data/sitecon_models/prokaryotic/AgaR.sitecon.gz

data/sitecon_models/prokaryotic/AraC.sitecon.gz

data/sitecon_models/prokaryotic/ArcA.sitecon.gz

data/sitecon_models/prokaryotic/ArgR.sitecon.gz

data/sitecon_models/prokaryotic/CpxR.sitecon.gz

data/sitecon_models/prokaryotic/Crp.sitecon.gz

data/sitecon_models/prokaryotic/CysB.sitecon.gz

data/sitecon_models/prokaryotic/CytR.sitecon.gz

data/sitecon_models/prokaryotic/DeoR.sitecon.gz

data/sitecon_models/prokaryotic/DnaA.sitecon.gz

data/sitecon_models/prokaryotic/FUR.sitecon.gz

data/sitecon_models/prokaryotic/FadR.sitecon.gz

data/sitecon_models/prokaryotic/FlhDC.sitecon.gz

data/sitecon_models/prokaryotic/Fnr.sitecon.gz

data/sitecon_models/prokaryotic/Frur.sitecon.gz

data/sitecon_models/prokaryotic/GALR.sitecon.gz

data/sitecon_models/prokaryotic/GALS.sitecon.gz

data/sitecon_models/prokaryotic/GLPR.sitecon.gz

data/sitecon_models/prokaryotic/GNTR.sitecon.gz

data/sitecon_models/prokaryotic/HNS.sitecon.gz

data/sitecon_models/prokaryotic/ICLR.sitecon.gz

data/sitecon_models/prokaryotic/IHF.sitecon.gz

data/sitecon_models/prokaryotic/ISCR1.sitecon.gz

data/sitecon_models/prokaryotic/ISCR3.sitecon.gz

data/sitecon_models/prokaryotic/LEXA.sitecon.gz

data/sitecon_models/prokaryotic/Lrp.sitecon.gz

data/sitecon_models/prokaryotic/MALT.sitecon.gz

data/sitecon_models/prokaryotic/MARA.sitecon.gz

data/sitecon_models/prokaryotic/MELR.sitecon.gz

data/sitecon_models/prokaryotic/MLC.sitecon.gz

data/sitecon_models/prokaryotic/MODE.sitecon.gz

data/sitecon_models/prokaryotic/MetJ.sitecon.gz

data/sitecon_models/prokaryotic/MetR1.sitecon.gz

data/sitecon_models/prokaryotic/NAC.sitecon.gz

data/sitecon_models/prokaryotic/NAGC_new2.sitecon.gz

data/sitecon_models/prokaryotic/NANR.sitecon.gz

data/sitecon_models/prokaryotic/NARL2.sitecon.gz

data/sitecon_models/prokaryotic/NARP.sitecon.gz

data/sitecon_models/prokaryotic/NTRC.sitecon.gz

data/sitecon_models/prokaryotic/NarL.sitecon.gz

data/sitecon_models/prokaryotic/OmpR.sitecon.gz

data/sitecon_models/prokaryotic/OxyR.sitecon.gz

data/sitecon_models/prokaryotic/PHOB.sitecon.gz

data/sitecon_models/prokaryotic/PHOP.sitecon.gz

data/sitecon_models/prokaryotic/PurR.sitecon.gz

data/sitecon_models/prokaryotic/ROB.sitecon.gz

data/sitecon_models/prokaryotic/RcsB_1core.sitecon.gz

data/sitecon_models/prokaryotic/RcsB_2core.sitecon.gz

data/sitecon_models/prokaryotic/Rob2.sitecon.gz

data/sitecon_models/prokaryotic/TORR.sitecon.gz

data/sitecon_models/prokaryotic/TRPR.sitecon.gz

data/sitecon_models/prokaryotic/TyrR.sitecon.gz

data/sitecon_models/prokaryotic/fis_new1.sitecon.gz

data/sitecon_models/prokaryotic/soxS.sitecon.gz

data/weight_matrix

data/weight_matrix/blosum100.txt

data/weight_matrix/blosum30.txt

data/weight_matrix/blosum35.txt

data/weight_matrix/blosum40.txt

data/weight_matrix/blosum45.txt

data/weight_matrix/blosum50.txt

data/weight_matrix/blosum55.txt

data/weight_matrix/blosum60.txt

data/weight_matrix/blosum62.txt

data/weight_matrix/blosum65.txt

data/weight_matrix/blosum70.txt

data/weight_matrix/blosum75.txt

data/weight_matrix/blosum80.txt

data/weight_matrix/blosum85.txt

data/weight_matrix/blosum90.txt

data/weight_matrix/blosumn.txt

data/weight_matrix/dayhoff.txt

data/weight_matrix/dna.txt

data/weight_matrix/gonnet.txt

data/weight_matrix/identity.txt

data/weight_matrix/match.txt

data/weight_matrix/md_10.txt

data/weight_matrix/md_20.txt

data/weight_matrix/md_40.txt

data/weight_matrix/nuc.4.4.txt

data/weight_matrix/pam10.txt

data/weight_matrix/pam100.txt

data/weight_matrix/pam110.txt

data/weight_matrix/pam120.cdi.txt

data/weight_matrix/pam120.txt

data/weight_matrix/pam130.txt

data/weight_matrix/pam140.txt

data/weight_matrix/pam150.txt

data/weight_matrix/pam160.cdi.txt

data/weight_matrix/pam160.txt

data/weight_matrix/pam170.txt

data/weight_matrix/pam180.txt

data/weight_matrix/pam190.txt

data/weight_matrix/pam20.txt

data/weight_matrix/pam200.cdi.txt

data/weight_matrix/pam200.txt

data/weight_matrix/pam210.txt

data/weight_matrix/pam220.txt

data/weight_matrix/pam230.txt

data/weight_matrix/pam240.txt

data/weight_matrix/pam250.cdi.txt

data/weight_matrix/pam250.txt

data/weight_matrix/pam260.txt

data/weight_matrix/pam270.txt

data/weight_matrix/pam280.txt

data/weight_matrix/pam290.txt

data/weight_matrix/pam30.txt

data/weight_matrix/pam300.txt

data/weight_matrix/pam310.txt

data/weight_matrix/pam320.txt

data/weight_matrix/pam330.txt

data/weight_matrix/pam340.txt

data/weight_matrix/pam350.txt

data/weight_matrix/pam360.txt

data/weight_matrix/pam370.txt

data/weight_matrix/pam380.txt

data/weight_matrix/pam390.txt

data/weight_matrix/pam40.cdi.txt

data/weight_matrix/pam40.txt

data/weight_matrix/pam400.txt

data/weight_matrix/pam410.txt

data/weight_matrix/pam420.txt

data/weight_matrix/pam430.txt

data/weight_matrix/pam440.txt

data/weight_matrix/pam450.txt

data/weight_matrix/pam460.txt

data/weight_matrix/pam470.txt

data/weight_matrix/pam480.txt

data/weight_matrix/pam490.txt

data/weight_matrix/pam50.txt

data/weight_matrix/pam500.txt

data/weight_matrix/pam60.txt

data/weight_matrix/pam70.txt

data/weight_matrix/pam80.cdi.txt

data/weight_matrix/pam80.txt

data/weight_matrix/pam90.txt

data/weight_matrix/rna.txt

data/weight_matrix/vtml160.txt

data/weight_matrix/vtml200.txt

data/workflow_samples

data/workflow_samples/Alignment

data/workflow_samples/Alignment/basic_align.uwl

data/workflow_samples/Conversions

data/workflow_samples/Conversions/faqual2fastq.uwl

data/workflow_samples/Conversions/msa2clustal.uwl

data/workflow_samples/Conversions/query2alignment.uwl

data/workflow_samples/Conversions/seq2gen.uwl

data/workflow_samples/Custom elements

data/workflow_samples/Custom elements/script-create-alignment.uwl

data/workflow_samples/Custom elements/script-dump-sequence-info.uwl

data/workflow_samples/Custom elements/script-quality-filter.uwl

data/workflow_samples/DNA assembly

data/workflow_samples/DNA assembly/bowtie-read-index.uwl

data/workflow_samples/DNA assembly/gen-al-read-index.uwl

data/workflow_samples/HMMER

data/workflow_samples/HMMER/build-test-HMM.uwl

data/workflow_samples/HMMER/searchHMM.uwl

data/workflow_samples/Transcriptomics

data/workflow_samples/Transcriptomics/SearchTFBS.uwl

data/workflow_samples/users

data/workflow_samples/users/CreateAlignment.usa

data/workflow_samples/users/Dump sequence info.usa

data/workflow_samples/users/QualityFilter.usa

debian/README.Debian

debian/patches

debian/patches/do_not_strip.patch

debian/patches/series

debian/source

debian/source/format

debian/ugene.lintian-overrides

installer/_common_data/README

installer/_common_data/ugene

installer/_common_data/ugened

installer/linux

installer/linux/fedora

installer/linux/fedora/devel

installer/linux/fedora/devel/ugene.spec

installer/linux/fedora/mkinstaller.sh

installer/linux/fedora/rpmbuild.txt

installer/linux/fedora/ugene.spec

installer/linux/ubuntu

installer/linux/ubuntu/build.sh

installer/linux/ubuntu/build.txt

installer/linux/ubuntu/debian

installer/linux/ubuntu/debian/changelog

installer/linux/ubuntu/debian/compat

installer/linux/ubuntu/debian/control

installer/linux/ubuntu/debian/copyright

installer/linux/ubuntu/debian/rules

installer/linux/ubuntu/debian/source

installer/linux/ubuntu/debian/source/format

installer/linux/ubuntu/debian/watch

installer/linux/ubuntu/pack.sh

installer/macosx

installer/macosx/Info.plist

installer/macosx/build

installer/macosx/bundle_common.sh

installer/macosx/bundle_ugenecl.sh

installer/macosx/bundle_ugeneui.sh

installer/macosx/compress.sh

installer/macosx/package.sh

installer/macosx/qt_menu.nib

installer/macosx/qt_menu.nib/classes.nib

installer/macosx/qt_menu.nib/info.nib

installer/macosx/qt_menu.nib/keyedobjects.nib

installer/macosx/scripts

installer/macosx/scripts/postflight

installer/macosx/ugene.pmdoc

installer/macosx/ugene.pmdoc/01package-contents.xml

installer/macosx/ugene.pmdoc/01package.xml

installer/macosx/ugene.pmdoc/index.xml

installer/macosx/ugene.pmproj

installer/macosx/ugene.sh

installer/windows

installer/windows/images

installer/windows/images/header.bmp

installer/windows/images/install.ico

installer/windows/images/install2.ico

installer/windows/images/uninstall.ico

installer/windows/images/welcome.bmp

installer/windows/ugene.nsh

installer/windows/ugene_extensions.nsh

src/corelibs

src/corelibs/U2Algorithm

src/corelibs/U2Algorithm/U2Algorithm.pri

src/corelibs/U2Algorithm/U2Algorithm.pro

src/corelibs/U2Algorithm/U2Algorithm.qrc

src/corelibs/U2Algorithm/src

src/corelibs/U2Algorithm/src/molecular_geometry

src/corelibs/U2Algorithm/src/molecular_geometry/GeomUtils.cpp

src/corelibs/U2Algorithm/src/molecular_geometry/GeomUtils.h

src/corelibs/U2Algorithm/src/molecular_geometry/MolecularSurface.cpp

src/corelibs/U2Algorithm/src/molecular_geometry/MolecularSurface.h

src/corelibs/U2Algorithm/src/molecular_geometry/MolecularSurfaceFactoryRegistry.cpp

src/corelibs/U2Algorithm/src/molecular_geometry/MolecularSurfaceFactoryRegistry.h

src/corelibs/U2Algorithm/src/molecular_geometry/VanDerWaalsSurface.cpp

src/corelibs/U2Algorithm/src/molecular_geometry/VanDerWaalsSurface.h

src/corelibs/U2Algorithm/src/phyltree

src/corelibs/U2Algorithm/src/phyltree/CreatePhyTreeSettings.cpp

src/corelibs/U2Algorithm/src/phyltree/CreatePhyTreeSettings.h

src/corelibs/U2Algorithm/src/phyltree/PhyTreeGenerator.h

src/corelibs/U2Algorithm/src/phyltree/PhyTreeGeneratorRegistry.cpp

src/corelibs/U2Algorithm/src/phyltree/PhyTreeGeneratorRegistry.h

src/corelibs/U2Algorithm/src/phyltree/PhyTreeGeneratorTask.cpp

src/corelibs/U2Algorithm/src/phyltree/PhyTreeGeneratorTask.h

src/corelibs/U2Algorithm/src/registry

src/corelibs/U2Algorithm/src/registry/CDSearchTaskFactoryRegistry.h

src/corelibs/U2Algorithm/src/registry/CudaGpuRegistry.cpp

src/corelibs/U2Algorithm/src/registry/CudaGpuRegistry.h

src/corelibs/U2Algorithm/src/registry/DnaAssemblyAlgRegistry.cpp

src/corelibs/U2Algorithm/src/registry/DnaAssemblyAlgRegistry.h

src/corelibs/U2Algorithm/src/registry/DnaAssemblyTask.cpp

src/corelibs/U2Algorithm/src/registry/DnaAssemblyTask.h

src/corelibs/U2Algorithm/src/registry/MSAAlignAlgRegistry.cpp

src/corelibs/U2Algorithm/src/registry/MSAAlignAlgRegistry.h

src/corelibs/U2Algorithm/src/registry/MSAAlignTask.cpp

src/corelibs/U2Algorithm/src/registry/MSAAlignTask.h

src/corelibs/U2Algorithm/src/registry/OpenCLGpuRegistry.cpp

src/corelibs/U2Algorithm/src/registry/OpenCLGpuRegistry.h

src/corelibs/U2Algorithm/src/registry/RepeatFinderTaskFactoryRegistry.cpp

src/corelibs/U2Algorithm/src/registry/RepeatFinderTaskFactoryRegistry.h

src/corelibs/U2Algorithm/src/registry/SecStructPredictAlgRegistry.cpp

src/corelibs/U2Algorithm/src/registry/SecStructPredictAlgRegistry.h

src/corelibs/U2Algorithm/src/registry/SecStructPredictTask.cpp

src/corelibs/U2Algorithm/src/registry/SecStructPredictTask.h

src/corelibs/U2Algorithm/src/registry/SubstMatrixRegistry.cpp

src/corelibs/U2Algorithm/src/registry/SubstMatrixRegistry.h

src/corelibs/U2Algorithm/src/smith_waterman

src/corelibs/U2Algorithm/src/smith_waterman/SWResultFilterRegistry.cpp

src/corelibs/U2Algorithm/src/smith_waterman/SWResultFilterRegistry.h

src/corelibs/U2Algorithm/src/smith_waterman/SmithWatermanReportCallback.cpp

src/corelibs/U2Algorithm/src/smith_waterman/SmithWatermanReportCallback.h

src/corelibs/U2Algorithm/src/smith_waterman/SmithWatermanResult.cpp

src/corelibs/U2Algorithm/src/smith_waterman/SmithWatermanResult.h

src/corelibs/U2Algorithm/src/smith_waterman/SmithWatermanResultFilters.cpp

src/corelibs/U2Algorithm/src/smith_waterman/SmithWatermanResultFilters.h

src/corelibs/U2Algorithm/src/smith_waterman/SmithWatermanSettings.h

src/corelibs/U2Algorithm/src/smith_waterman/SmithWatermanTaskFactory.h

src/corelibs/U2Algorithm/src/smith_waterman/SmithWatermanTaskFactoryRegistry.cpp

src/corelibs/U2Algorithm/src/smith_waterman/SmithWatermanTaskFactoryRegistry.h

src/corelibs/U2Algorithm/src/smith_waterman/SmithWatermanUtil.cpp

src/corelibs/U2Algorithm/src/smith_waterman/SmithWatermanUtil.h

src/corelibs/U2Algorithm/src/structural_alignment

src/corelibs/U2Algorithm/src/structural_alignment/StructuralAlignmentAlgorithm.cpp

src/corelibs/U2Algorithm/src/structural_alignment/StructuralAlignmentAlgorithm.h

src/corelibs/U2Algorithm/src/structural_alignment/StructuralAlignmentAlgorithmFactory.cpp

src/corelibs/U2Algorithm/src/structural_alignment/StructuralAlignmentAlgorithmFactory.h

src/corelibs/U2Algorithm/src/structural_alignment/StructuralAlignmentAlgorithmRegistry.cpp

src/corelibs/U2Algorithm/src/structural_alignment/StructuralAlignmentAlgorithmRegistry.h

src/corelibs/U2Algorithm/src/util_algorithm

src/corelibs/U2Algorithm/src/util_algorithm/BinaryFindOpenCL.cpp

src/corelibs/U2Algorithm/src/util_algorithm/BinaryFindOpenCL.h

src/corelibs/U2Algorithm/src/util_algorithm/BitsTable.cpp

src/corelibs/U2Algorithm/src/util_algorithm/BitsTable.h

src/corelibs/U2Algorithm/src/util_algorithm/DynTable.h

src/corelibs/U2Algorithm/src/util_algorithm/EnzymeModel.cpp

src/corelibs/U2Algorithm/src/util_algorithm/EnzymeModel.h

src/corelibs/U2Algorithm/src/util_algorithm/FindAlgorithm.cpp

src/corelibs/U2Algorithm/src/util_algorithm/FindAlgorithm.h

src/corelibs/U2Algorithm/src/util_algorithm/FindAlgorithmTask.cpp

src/corelibs/U2Algorithm/src/util_algorithm/FindAlgorithmTask.h

src/corelibs/U2Algorithm/src/util_algorithm/ORFAlgorithmTask.cpp

src/corelibs/U2Algorithm/src/util_algorithm/ORFAlgorithmTask.h

src/corelibs/U2Algorithm/src/util_algorithm/ORFFinder.cpp

src/corelibs/U2Algorithm/src/util_algorithm/ORFFinder.h

src/corelibs/U2Algorithm/src/util_algorithm/RollingArray.h

src/corelibs/U2Algorithm/src/util_algorithm/RollingMatrix.h

src/corelibs/U2Algorithm/src/util_algorithm/SArrayBasedFindTask.cpp

src/corelibs/U2Algorithm/src/util_algorithm/SArrayBasedFindTask.h

src/corelibs/U2Algorithm/src/util_algorithm/SArrayIndex.cpp

src/corelibs/U2Algorithm/src/util_algorithm/SArrayIndex.h

src/corelibs/U2Algorithm/src/util_algorithm/SArrayIndexSerializer.cpp

src/corelibs/U2Algorithm/src/util_algorithm/SArrayIndexSerializer.h

src/corelibs/U2Algorithm/src/util_cds

src/corelibs/U2Algorithm/src/util_cds/CDSearchTaskFactory.h

src/corelibs/U2Algorithm/src/util_dna_assembly

src/corelibs/U2Algorithm/src/util_dna_assembly/DnaAssemblyMultiTask.cpp

src/corelibs/U2Algorithm/src/util_dna_assembly/DnaAssemblyMultiTask.h

src/corelibs/U2Algorithm/src/util_gpu

src/corelibs/U2Algorithm/src/util_gpu/opencl

src/corelibs/U2Algorithm/src/util_gpu/opencl/BinaryFind.cl

src/corelibs/U2Algorithm/src/util_gpu/opencl/OpenCLHelper.cpp

src/corelibs/U2Algorithm/src/util_gpu/opencl/OpenCLHelper.h

src/corelibs/U2Algorithm/src/util_gpu/opencl/OpenCLUtils.cpp

src/corelibs/U2Algorithm/src/util_gpu/opencl/OpenCLUtils.h

src/corelibs/U2Algorithm/src/util_msa_consensus

src/corelibs/U2Algorithm/src/util_msa_consensus/BuiltInConsensusAlgorithms.cpp

src/corelibs/U2Algorithm/src/util_msa_consensus/BuiltInConsensusAlgorithms.h

src/corelibs/U2Algorithm/src/util_msa_consensus/MSAConsensusAlgorithm.cpp

src/corelibs/U2Algorithm/src/util_msa_consensus/MSAConsensusAlgorithm.h

src/corelibs/U2Algorithm/src/util_msa_consensus/MSAConsensusAlgorithmClustal.cpp

src/corelibs/U2Algorithm/src/util_msa_consensus/MSAConsensusAlgorithmClustal.h

src/corelibs/U2Algorithm/src/util_msa_consensus/MSAConsensusAlgorithmDefault.cpp

src/corelibs/U2Algorithm/src/util_msa_consensus/MSAConsensusAlgorithmDefault.h

src/corelibs/U2Algorithm/src/util_msa_consensus/MSAConsensusAlgorithmLevitsky.cpp

src/corelibs/U2Algorithm/src/util_msa_consensus/MSAConsensusAlgorithmLevitsky.h

src/corelibs/U2Algorithm/src/util_msa_consensus/MSAConsensusAlgorithmRegistry.cpp

src/corelibs/U2Algorithm/src/util_msa_consensus/MSAConsensusAlgorithmRegistry.h

src/corelibs/U2Algorithm/src/util_msa_consensus/MSAConsensusAlgorithmStrict.cpp

src/corelibs/U2Algorithm/src/util_msa_consensus/MSAConsensusAlgorithmStrict.h

src/corelibs/U2Algorithm/src/util_msa_consensus/MSAConsensusUtils.cpp

src/corelibs/U2Algorithm/src/util_msa_consensus/MSAConsensusUtils.h

src/corelibs/U2Algorithm/src/util_msa_distance

src/corelibs/U2Algorithm/src/util_msa_distance/BuiltInDistanceAlgorithms.cpp

src/corelibs/U2Algorithm/src/util_msa_distance/BuiltInDistanceAlgorithms.h

src/corelibs/U2Algorithm/src/util_msa_distance/MSADistanceAlgorithm.cpp

src/corelibs/U2Algorithm/src/util_msa_distance/MSADistanceAlgorithm.h

src/corelibs/U2Algorithm/src/util_msa_distance/MSADistanceAlgorithmHamming.cpp

src/corelibs/U2Algorithm/src/util_msa_distance/MSADistanceAlgorithmHamming.h

src/corelibs/U2Algorithm/src/util_msa_distance/MSADistanceAlgorithmHammingRevCompl.cpp

src/corelibs/U2Algorithm/src/util_msa_distance/MSADistanceAlgorithmHammingRevCompl.h

src/corelibs/U2Algorithm/src/util_msa_distance/MSADistanceAlgorithmRegistry.cpp

src/corelibs/U2Algorithm/src/util_msa_distance/MSADistanceAlgorithmRegistry.h

src/corelibs/U2Algorithm/src/util_msaedit

src/corelibs/U2Algorithm/src/util_msaedit/CreateSubalignmentTask.cpp

src/corelibs/U2Algorithm/src/util_msaedit/CreateSubalignmentTask.h

src/corelibs/U2Algorithm/src/util_msaedit/MAlignmentUtilTasks.cpp

src/corelibs/U2Algorithm/src/util_msaedit/MAlignmentUtilTasks.h

src/corelibs/U2Algorithm/src/util_repeat_finder

src/corelibs/U2Algorithm/src/util_repeat_finder/RepeatFinderSettings.h

src/corelibs/U2Algorithm/src/util_repeat_finder/RepeatFinderTaskFactory.h

src/corelibs/U2Algorithm/src/util_weight_matrix

src/corelibs/U2Algorithm/src/util_weight_matrix/BuiltInPWMConversionAlgorithms.cpp

src/corelibs/U2Algorithm/src/util_weight_matrix/BuiltInPWMConversionAlgorithms.h

src/corelibs/U2Algorithm/src/util_weight_matrix/PWMConversionAlgorithm.cpp

src/corelibs/U2Algorithm/src/util_weight_matrix/PWMConversionAlgorithm.h

src/corelibs/U2Algorithm/src/util_weight_matrix/PWMConversionAlgorithmBVH.cpp

src/corelibs/U2Algorithm/src/util_weight_matrix/PWMConversionAlgorithmBVH.h

src/corelibs/U2Algorithm/src/util_weight_matrix/PWMConversionAlgorithmLOD.cpp

src/corelibs/U2Algorithm/src/util_weight_matrix/PWMConversionAlgorithmLOD.h

src/corelibs/U2Algorithm/src/util_weight_matrix/PWMConversionAlgorithmMCH.cpp

src/corelibs/U2Algorithm/src/util_weight_matrix/PWMConversionAlgorithmMCH.h

src/corelibs/U2Algorithm/src/util_weight_matrix/PWMConversionAlgorithmNLG.cpp

src/corelibs/U2Algorithm/src/util_weight_matrix/PWMConversionAlgorithmNLG.h

src/corelibs/U2Algorithm/src/util_weight_matrix/PWMConversionAlgorithmRegistry.cpp

src/corelibs/U2Algorithm/src/util_weight_matrix/PWMConversionAlgorithmRegistry.h

src/corelibs/U2Algorithm/transl

src/corelibs/U2Algorithm/transl/czech.ts

src/corelibs/U2Algorithm/transl/english.ts

src/corelibs/U2Algorithm/transl/russian.ts

src/corelibs/U2Core

src/corelibs/U2Core/U2Core.pri

src/corelibs/U2Core/U2Core.pro

src/corelibs/U2Core/src

src/corelibs/U2Core/src/cmdline

src/corelibs/U2Core/src/cmdline/CMDLineCoreOptions.cpp

src/corelibs/U2Core/src/cmdline/CMDLineCoreOptions.h

src/corelibs/U2Core/src/cmdline/CMDLineHelpProvider.h

src/corelibs/U2Core/src/cmdline/CMDLineRegistry.cpp

src/corelibs/U2Core/src/cmdline/CMDLineRegistry.h

src/corelibs/U2Core/src/cmdline/CMDLineUtils.cpp

src/corelibs/U2Core/src/cmdline/CMDLineUtils.h

src/corelibs/U2Core/src/datatype

src/corelibs/U2Core/src/datatype/AnnotationData.cpp

src/corelibs/U2Core/src/datatype/AnnotationData.h

src/corelibs/U2Core/src/datatype/AnnotationSettings.cpp

src/corelibs/U2Core/src/datatype/AnnotationSettings.h

src/corelibs/U2Core/src/datatype/BaseAlphabets.cpp

src/corelibs/U2Core/src/datatype/BaseTranslations.cpp

src/corelibs/U2Core/src/datatype/BioStruct3D.cpp

src/corelibs/U2Core/src/datatype/BioStruct3D.h

src/corelibs/U2Core/src/datatype/DIProperties.h

src/corelibs/U2Core/src/datatype/DNAAlphabet.cpp

src/corelibs/U2Core/src/datatype/DNAAlphabet.h

src/corelibs/U2Core/src/datatype/DNAAlphabetRegistryImpl.cpp

src/corelibs/U2Core/src/datatype/DNAAlphabetRegistryImpl.h

src/corelibs/U2Core/src/datatype/DNAAlphabetUtils.h

src/corelibs/U2Core/src/datatype/DNAChromatogram.h

src/corelibs/U2Core/src/datatype/DNAInfo.cpp

src/corelibs/U2Core/src/datatype/DNAInfo.h

src/corelibs/U2Core/src/datatype/DNAQuality.cpp

src/corelibs/U2Core/src/datatype/DNAQuality.h

src/corelibs/U2Core/src/datatype/DNASequence.cpp

src/corelibs/U2Core/src/datatype/DNASequence.h

src/corelibs/U2Core/src/datatype/DNATranslation.cpp

src/corelibs/U2Core/src/datatype/DNATranslation.h

src/corelibs/U2Core/src/datatype/DNATranslationImpl.cpp

src/corelibs/U2Core/src/datatype/DNATranslationImpl.h

src/corelibs/U2Core/src/datatype/FeatureColors.cpp

src/corelibs/U2Core/src/datatype/FeatureColors.h

src/corelibs/U2Core/src/datatype/MAlignment.cpp

src/corelibs/U2Core/src/datatype/MAlignment.h

src/corelibs/U2Core/src/datatype/MAlignmentInfo.cpp

src/corelibs/U2Core/src/datatype/MAlignmentInfo.h

src/corelibs/U2Core/src/datatype/Matrix44.cpp

src/corelibs/U2Core/src/datatype/Matrix44.h

src/corelibs/U2Core/src/datatype/PFMatrix.cpp

src/corelibs/U2Core/src/datatype/PFMatrix.h

src/corelibs/U2Core/src/datatype/PWMatrix.cpp

src/corelibs/U2Core/src/datatype/PWMatrix.h

src/corelibs/U2Core/src/datatype/PhyTree.cpp

src/corelibs/U2Core/src/datatype/PhyTree.h

src/corelibs/U2Core/src/datatype/SMatrix.cpp

src/corelibs/U2Core/src/datatype/SMatrix.h

src/corelibs/U2Core/src/datatype/U2Region.cpp

src/corelibs/U2Core/src/datatype/UIndex.cpp

src/corelibs/U2Core/src/datatype/UIndex.h

src/corelibs/U2Core/src/datatype/Vector3D.cpp

src/corelibs/U2Core/src/datatype/Vector3D.h

src/corelibs/U2Core/src/dbi

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src/corelibs/U2View/src/util_ov_annotated_dna/EditAnnotationDialogController.cpp

src/corelibs/U2View/src/util_ov_annotated_dna/EditAnnotationDialogController.h

src/corelibs/U2View/src/util_ov_annotated_dna/GSequenceGraphView.cpp

src/corelibs/U2View/src/util_ov_annotated_dna/GSequenceGraphView.h

src/corelibs/U2View/src/util_ov_annotated_dna/GSequenceLineView.cpp

src/corelibs/U2View/src/util_ov_annotated_dna/GSequenceLineView.h

src/corelibs/U2View/src/util_ov_annotated_dna/GSequenceLineViewAnnotated.cpp

src/corelibs/U2View/src/util_ov_annotated_dna/GSequenceLineViewAnnotated.h

src/corelibs/U2View/src/util_ov_annotated_dna/Overview.cpp

src/corelibs/U2View/src/util_ov_annotated_dna/Overview.h

src/corelibs/U2View/src/util_ov_annotated_dna/PanView.cpp

src/corelibs/U2View/src/util_ov_annotated_dna/PanView.h

src/corelibs/U2View/src/util_ov_annotated_dna/PanViewRows.cpp

src/corelibs/U2View/src/util_ov_annotated_dna/PanViewRows.h

src/corelibs/U2View/src/util_ov_annotated_dna/WindowStepSelectorWidget.cpp

src/corelibs/U2View/src/util_ov_annotated_dna/WindowStepSelectorWidget.h

src/corelibs/U2View/src/util_ov_annotated_dna/ui

src/corelibs/U2View/src/util_ov_annotated_dna/ui/CreateRulerDialog.ui

src/corelibs/U2View/src/util_ov_annotated_dna/ui/EditAnnotationDialog.ui

src/corelibs/U2View/src/util_ov_indexview

src/corelibs/U2View/src/util_ov_indexview/CreateFileIndexDialog.h

src/corelibs/U2View/src/util_ov_indexview/UIndexExportToNewFileDialogImpl.cpp

src/corelibs/U2View/src/util_ov_indexview/UIndexExportToNewFileDialogImpl.h

src/corelibs/U2View/src/util_ov_indexview/UIndexSupport.cpp

src/corelibs/U2View/src/util_ov_indexview/UIndexSupport.h

src/corelibs/U2View/src/util_ov_indexview/UIndexViewHeaderItemWidgetImpl.cpp

src/corelibs/U2View/src/util_ov_indexview/UIndexViewHeaderItemWidgetImpl.h

src/corelibs/U2View/src/util_ov_indexview/UIndexViewWidgetImpl.cpp

src/corelibs/U2View/src/util_ov_indexview/UIndexViewWidgetImpl.h

src/corelibs/U2View/src/util_ov_indexview/UIndexViewWidgetKey.cpp

src/corelibs/U2View/src/util_ov_indexview/UIndexViewWidgetKey.h

src/corelibs/U2View/src/util_ov_indexview/UIndexViewer.cpp

src/corelibs/U2View/src/util_ov_indexview/UIndexViewer.h

src/corelibs/U2View/src/util_ov_indexview/UIndexViewerFactory.cpp

src/corelibs/U2View/src/util_ov_indexview/UIndexViewerFactory.h

src/corelibs/U2View/src/util_ov_indexview/UIndexViewerTasks.cpp

src/corelibs/U2View/src/util_ov_indexview/UIndexViewerTasks.h

src/corelibs/U2View/src/util_ov_indexview/ui

src/corelibs/U2View/src/util_ov_indexview/ui/CreateFileIndexDialog.ui

src/corelibs/U2View/src/util_ov_indexview/ui/UIndexExportToNewFileDialog.ui

src/corelibs/U2View/src/util_ov_indexview/ui/UIndexViewHeaderItemWidget.ui

src/corelibs/U2View/src/util_ov_indexview/ui/UIndexViewWidget.ui

src/corelibs/U2View/src/util_ov_msaedit

src/corelibs/U2View/src/util_ov_msaedit/AlignmentLogo.cpp

src/corelibs/U2View/src/util_ov_msaedit/AlignmentLogo.h

src/corelibs/U2View/src/util_ov_msaedit/ConsensusSelectorDialogController.cpp

src/corelibs/U2View/src/util_ov_msaedit/ConsensusSelectorDialogController.h

src/corelibs/U2View/src/util_ov_msaedit/CreateSubalignimentDialogController.cpp

src/corelibs/U2View/src/util_ov_msaedit/CreateSubalignimentDialogController.h

src/corelibs/U2View/src/util_ov_msaedit/DeleteGapsDialog.cpp

src/corelibs/U2View/src/util_ov_msaedit/DeleteGapsDialog.h

src/corelibs/U2View/src/util_ov_msaedit/MSAColorScheme.cpp

src/corelibs/U2View/src/util_ov_msaedit/MSAColorScheme.h

src/corelibs/U2View/src/util_ov_msaedit/MSAEditor.cpp

src/corelibs/U2View/src/util_ov_msaedit/MSAEditor.h

src/corelibs/U2View/src/util_ov_msaedit/MSAEditorBaseOffsetsCache.cpp

src/corelibs/U2View/src/util_ov_msaedit/MSAEditorBaseOffsetsCache.h

src/corelibs/U2View/src/util_ov_msaedit/MSAEditorConsensusArea.cpp

src/corelibs/U2View/src/util_ov_msaedit/MSAEditorConsensusArea.h

src/corelibs/U2View/src/util_ov_msaedit/MSAEditorConsensusCache.cpp

src/corelibs/U2View/src/util_ov_msaedit/MSAEditorConsensusCache.h

src/corelibs/U2View/src/util_ov_msaedit/MSAEditorFactory.cpp

src/corelibs/U2View/src/util_ov_msaedit/MSAEditorFactory.h

src/corelibs/U2View/src/util_ov_msaedit/MSAEditorNameList.cpp

src/corelibs/U2View/src/util_ov_msaedit/MSAEditorNameList.h

src/corelibs/U2View/src/util_ov_msaedit/MSAEditorOffsetsView.cpp

src/corelibs/U2View/src/util_ov_msaedit/MSAEditorOffsetsView.h

src/corelibs/U2View/src/util_ov_msaedit/MSAEditorSequenceArea.cpp

src/corelibs/U2View/src/util_ov_msaedit/MSAEditorSequenceArea.h

src/corelibs/U2View/src/util_ov_msaedit/MSAEditorState.cpp

src/corelibs/U2View/src/util_ov_msaedit/MSAEditorState.h

src/corelibs/U2View/src/util_ov_msaedit/MSAEditorStatusBar.cpp

src/corelibs/U2View/src/util_ov_msaedit/MSAEditorStatusBar.h

src/corelibs/U2View/src/util_ov_msaedit/MSAEditorTasks.cpp

src/corelibs/U2View/src/util_ov_msaedit/MSAEditorTasks.h

src/corelibs/U2View/src/util_ov_msaedit/MSAEditorUndoFramework.cpp

src/corelibs/U2View/src/util_ov_msaedit/MSAEditorUndoFramework.h

src/corelibs/U2View/src/util_ov_msaedit/ui

src/corelibs/U2View/src/util_ov_msaedit/ui/ConsensusSelectorDialog.ui

src/corelibs/U2View/src/util_ov_msaedit/ui/CreateSubalignimentDialog.ui

src/corelibs/U2View/src/util_ov_msaedit/ui/DeleteGapsDialog.ui

src/corelibs/U2View/src/util_ov_phyltree

src/corelibs/U2View/src/util_ov_phyltree/CreateBranchesTask.h

src/corelibs/U2View/src/util_ov_phyltree/CreateCircularBranchesTask.cpp

src/corelibs/U2View/src/util_ov_phyltree/CreateCircularBranchesTask.h

src/corelibs/U2View/src/util_ov_phyltree/CreateRectangularBranchesTask.cpp

src/corelibs/U2View/src/util_ov_phyltree/CreateRectangularBranchesTask.h

src/corelibs/U2View/src/util_ov_phyltree/CreateUnrootedBranchesTask.cpp

src/corelibs/U2View/src/util_ov_phyltree/CreateUnrootedBranchesTask.h

src/corelibs/U2View/src/util_ov_phyltree/GraphicsBranchItem.cpp

src/corelibs/U2View/src/util_ov_phyltree/GraphicsBranchItem.h

src/corelibs/U2View/src/util_ov_phyltree/GraphicsButtonItem.cpp

src/corelibs/U2View/src/util_ov_phyltree/GraphicsButtonItem.h

src/corelibs/U2View/src/util_ov_phyltree/GraphicsCircularBranchItem.cpp

src/corelibs/U2View/src/util_ov_phyltree/GraphicsCircularBranchItem.h

src/corelibs/U2View/src/util_ov_phyltree/GraphicsRectangularBranchItem.cpp

src/corelibs/U2View/src/util_ov_phyltree/GraphicsRectangularBranchItem.h

src/corelibs/U2View/src/util_ov_phyltree/GraphicsUnrootedBranchItem.cpp

src/corelibs/U2View/src/util_ov_phyltree/GraphicsUnrootedBranchItem.h

src/corelibs/U2View/src/util_ov_phyltree/TreeViewer.cpp

src/corelibs/U2View/src/util_ov_phyltree/TreeViewer.h

src/corelibs/U2View/src/util_ov_phyltree/TreeViewerFactory.cpp

src/corelibs/U2View/src/util_ov_phyltree/TreeViewerFactory.h

src/corelibs/U2View/src/util_ov_phyltree/TreeViewerState.cpp

src/corelibs/U2View/src/util_ov_phyltree/TreeViewerState.h

src/corelibs/U2View/src/util_ov_phyltree/TreeViewerTasks.cpp

src/corelibs/U2View/src/util_ov_phyltree/TreeViewerTasks.h

src/corelibs/U2View/src/util_ov_phyltree/TreeViewerUtils.cpp

src/corelibs/U2View/src/util_ov_phyltree/TreeViewerUtils.h

src/corelibs/U2View/src/util_ov_textview

src/corelibs/U2View/src/util_ov_textview/SimpleTextObjectView.cpp

src/corelibs/U2View/src/util_ov_textview/SimpleTextObjectView.h

src/corelibs/U2View/src/util_ov_textview/SimpleTextObjectViewTasks.cpp

src/corelibs/U2View/src/util_ov_textview/SimpleTextObjectViewTasks.h

src/corelibs/U2View/src/util_sec_struct_predict

src/corelibs/U2View/src/util_sec_struct_predict/SecStructDialog.cpp

src/corelibs/U2View/src/util_sec_struct_predict/SecStructDialog.h

src/corelibs/U2View/src/util_sec_struct_predict/SecStructPredictUtils.cpp

src/corelibs/U2View/src/util_sec_struct_predict/SecStructPredictUtils.h

src/corelibs/U2View/src/util_sec_struct_predict/ui

src/corelibs/U2View/src/util_sec_struct_predict/ui/SecStructDialog.ui

src/corelibs/U2View/src/util_smith_waterman

src/corelibs/U2View/src/util_smith_waterman/SmithWatermanDialog.cpp

src/corelibs/U2View/src/util_smith_waterman/SmithWatermanDialog.h

src/corelibs/U2View/src/util_smith_waterman/SmithWatermanDialogImpl.h

src/corelibs/U2View/src/util_smith_waterman/SubstMatrixDialog.cpp

src/corelibs/U2View/src/util_smith_waterman/SubstMatrixDialog.h

src/corelibs/U2View/src/util_smith_waterman/ui

src/corelibs/U2View/src/util_smith_waterman/ui/SmithWatermanDialogBase.ui

src/corelibs/U2View/src/util_smith_waterman/ui/SubstMatrixDialogBase.ui

src/corelibs/U2View/transl

src/corelibs/U2View/transl/czech.ts

src/corelibs/U2View/transl/english.ts

src/corelibs/U2View/transl/russian.ts

src/include

src/include/U2Algorithm

src/include/U2Algorithm/BinaryFindOpenCL.h

src/include/U2Algorithm/BitsTable.h

src/include/U2Algorithm/BuiltInConsensusAlgorithms.h

src/include/U2Algorithm/BuiltInDistanceAlgorithms.h

src/include/U2Algorithm/BuiltInPWMConversionAlgorithms.h

src/include/U2Algorithm/CDSearchTaskFactory.h

src/include/U2Algorithm/CDSearchTaskFactoryRegistry.h

src/include/U2Algorithm/CreatePhyTreeSettings.h

src/include/U2Algorithm/CreateSubalignmentTask.h

src/include/U2Algorithm/CudaGpuRegistry.h

src/include/U2Algorithm/DnaAssemblyAlgRegistry.h

src/include/U2Algorithm/DnaAssemblyMultiTask.h

src/include/U2Algorithm/DnaAssemblyTask.h

src/include/U2Algorithm/DynTable.h

src/include/U2Algorithm/EnzymeModel.h

src/include/U2Algorithm/FindAlgorithm.h

src/include/U2Algorithm/FindAlgorithmTask.h

src/include/U2Algorithm/GeomUtils.h

src/include/U2Algorithm/MAlignmentUtilTasks.h

src/include/U2Algorithm/MSAAlignAlgRegistry.h

src/include/U2Algorithm/MSAAlignTask.h

src/include/U2Algorithm/MSAConsensusAlgorithm.h

src/include/U2Algorithm/MSAConsensusAlgorithmClustal.h

src/include/U2Algorithm/MSAConsensusAlgorithmDefault.h

src/include/U2Algorithm/MSAConsensusAlgorithmLevitsky.h

src/include/U2Algorithm/MSAConsensusAlgorithmRegistry.h

src/include/U2Algorithm/MSAConsensusAlgorithmStrict.h

src/include/U2Algorithm/MSAConsensusUtils.h

src/include/U2Algorithm/MSADistanceAlgorithm.h

src/include/U2Algorithm/MSADistanceAlgorithmHamming.h

src/include/U2Algorithm/MSADistanceAlgorithmHammingRevCompl.h

src/include/U2Algorithm/MSADistanceAlgorithmRegistry.h

src/include/U2Algorithm/MolecularSurface.h

src/include/U2Algorithm/MolecularSurfaceFactoryRegistry.h

src/include/U2Algorithm/ORFAlgorithmTask.h

src/include/U2Algorithm/ORFFinder.h

src/include/U2Algorithm/OpenCLGpuRegistry.h

src/include/U2Algorithm/OpenCLHelper.h

src/include/U2Algorithm/OpenCLUtils.h

src/include/U2Algorithm/PWMConversionAlgorithm.h

src/include/U2Algorithm/PWMConversionAlgorithmBVH.h

src/include/U2Algorithm/PWMConversionAlgorithmLOD.h

src/include/U2Algorithm/PWMConversionAlgorithmMCH.h

src/include/U2Algorithm/PWMConversionAlgorithmNLG.h

src/include/U2Algorithm/PWMConversionAlgorithmRegistry.h

src/include/U2Algorithm/PhyTreeGenerator.h

src/include/U2Algorithm/PhyTreeGeneratorRegistry.h

src/include/U2Algorithm/PhyTreeGeneratorTask.h

src/include/U2Algorithm/RepeatFinderSettings.h

src/include/U2Algorithm/RepeatFinderTaskFactory.h

src/include/U2Algorithm/RepeatFinderTaskFactoryRegistry.h

src/include/U2Algorithm/RollingArray.h

src/include/U2Algorithm/RollingMatrix.h

src/include/U2Algorithm/SArrayBasedFindTask.h

src/include/U2Algorithm/SArrayIndex.h

src/include/U2Algorithm/SArrayIndexSerializer.h

src/include/U2Algorithm/SWResultFilterRegistry.h

src/include/U2Algorithm/SecStructPredictAlgRegistry.h

src/include/U2Algorithm/SecStructPredictTask.h

src/include/U2Algorithm/SmithWatermanReportCallback.h

src/include/U2Algorithm/SmithWatermanResult.h

src/include/U2Algorithm/SmithWatermanResultFilters.h

src/include/U2Algorithm/SmithWatermanSettings.h

src/include/U2Algorithm/SmithWatermanTaskFactory.h

src/include/U2Algorithm/SmithWatermanTaskFactoryRegistry.h

src/include/U2Algorithm/SmithWatermanUtil.h

src/include/U2Algorithm/StructuralAlignmentAlgorithm.h

src/include/U2Algorithm/StructuralAlignmentAlgorithmFactory.h

src/include/U2Algorithm/StructuralAlignmentAlgorithmRegistry.h

src/include/U2Algorithm/SubstMatrixRegistry.h

src/include/U2Algorithm/VanDerWaalsSurface.h

src/include/U2Algorithm/cl.h

src/include/U2Algorithm/cl_platform.h

src/include/U2Core

src/include/U2Core/AddDocumentTask.h

src/include/U2Core/AddPartToSequenceTask.h

src/include/U2Core/AddSequencesToAlignmentTask.h

src/include/U2Core/AnnotationData.h

src/include/U2Core/AnnotationSelection.h

src/include/U2Core/AnnotationSettings.h

src/include/U2Core/AnnotationTableObject.h

src/include/U2Core/AppContext.h

src/include/U2Core/AppGlobalObject.h

src/include/U2Core/AppResources.h

src/include/U2Core/AppSettings.h

src/include/U2Core/AssemblyObject.h

src/include/U2Core/AutoAnnotationsSupport.h

src/include/U2Core/BaseDocumentFormats.h

src/include/U2Core/BioStruct3D.h

src/include/U2Core/BioStruct3DObject.h

src/include/U2Core/CMDLineCoreOptions.h

src/include/U2Core/CMDLineHelpProvider.h

src/include/U2Core/CMDLineRegistry.h

src/include/U2Core/CMDLineUtils.h

src/include/U2Core/CopyDataTask.h

src/include/U2Core/Counter.h

src/include/U2Core/CreateAnnotationTask.h

src/include/U2Core/CreateFileIndexTask.h

src/include/U2Core/DBXRefRegistry.h

src/include/U2Core/DIProperties.h

src/include/U2Core/DNAAlphabet.h

src/include/U2Core/DNAAlphabetRegistryImpl.h

src/include/U2Core/DNAAlphabetUtils.h

src/include/U2Core/DNAChromatogram.h

src/include/U2Core/DNAChromatogramObject.h

src/include/U2Core/DNAInfo.h

src/include/U2Core/DNAQuality.h

src/include/U2Core/DNASequence.h

src/include/U2Core/DNASequenceObject.h

src/include/U2Core/DNASequenceSelection.h

src/include/U2Core/DNATranslation.h

src/include/U2Core/DNATranslationImpl.h

src/include/U2Core/DataBaseRegistry.h

src/include/U2Core/DbiDocumentFormat.h

src/include/U2Core/DocumentFormatConfigurators.h

src/include/U2Core/DocumentImport.h

src/include/U2Core/DocumentModel.h

src/include/U2Core/DocumentSelection.h

src/include/U2Core/DocumentUtils.h

src/include/U2Core/ExportToNewFileFromIndexTask.h

src/include/U2Core/ExternalToolRegistry.h

src/include/U2Core/ExtractAnnotatedRegionTask.h

src/include/U2Core/FailTask.h

src/include/U2Core/FeatureColors.h

src/include/U2Core/FormatUtils.h

src/include/U2Core/GAutoDeleteList.h

src/include/U2Core/GHints.h

src/include/U2Core/GObject.h

src/include/U2Core/GObjectReference.h

src/include/U2Core/GObjectRelationRoles.h

src/include/U2Core/GObjectSelection.h

src/include/U2Core/GObjectTypes.h

src/include/U2Core/GObjectUtils.h

src/include/U2Core/GUrl.h

src/include/U2Core/GUrlUtils.h

src/include/U2Core/GetDocumentFromIndexTask.h

src/include/U2Core/HttpFileAdapter.h

src/include/U2Core/IOAdapter.h

src/include/U2Core/IdRegistry.h

src/include/U2Core/Identifiable.h

src/include/U2Core/L10n.h

src/include/U2Core/LRegion.h

src/include/U2Core/LRegionsSelection.h

src/include/U2Core/LoadDocumentTask.h

src/include/U2Core/LoadRemoteDocumentTask.h

src/include/U2Core/LocalFileAdapter.h

src/include/U2Core/Log.h

src/include/U2Core/LogCache.h

src/include/U2Core/MAlignment.h

src/include/U2Core/MAlignmentInfo.h

src/include/U2Core/MAlignmentObject.h

src/include/U2Core/MSAUtils.h

src/include/U2Core/Matrix44.h

src/include/U2Core/MultiTask.h

src/include/U2Core/NetworkConfiguration.h

src/include/U2Core/PFMatrix.h

src/include/U2Core/PWMatrix.h

src/include/U2Core/PhyTree.h

src/include/U2Core/PhyTreeObject.h

src/include/U2Core/PluginModel.h

src/include/U2Core/ProjectModel.h

src/include/U2Core/ProjectService.h

src/include/U2Core/QVariantUtils.h

src/include/U2Core/RemoveAnnotationsTask.h

src/include/U2Core/RemoveDocumentTask.h

src/include/U2Core/RemovePartFromSequenceTask.h

src/include/U2Core/ReplacePartOfSequenceTask.h

src/include/U2Core/ResourceTracker.h

src/include/U2Core/ReverseSequenceTask.h

src/include/U2Core/RingBuffer.h

src/include/U2Core/SMatrix.h

src/include/U2Core/SaveDocumentStreamingTask.h

src/include/U2Core/SaveDocumentTask.h

src/include/U2Core/ScriptTask.h

src/include/U2Core/SelectionModel.h

src/include/U2Core/SelectionTypes.h

src/include/U2Core/SelectionUtils.h

src/include/U2Core/SequenceUtils.h

src/include/U2Core/SequenceWalkerTask.h

src/include/U2Core/ServiceModel.h

src/include/U2Core/ServiceTypes.h

src/include/U2Core/Settings.h

src/include/U2Core/StateLockableDataModel.h

src/include/U2Core/TLSTask.h

src/include/U2Core/Task.h

src/include/U2Core/TaskSignalMapper.h

src/include/U2Core/TaskStarter.h

src/include/U2Core/TextObject.h

src/include/U2Core/TextSelection.h

src/include/U2Core/TextUtils.h

src/include/U2Core/Timer.h

src/include/U2Core/U2AbstractDbi.h

src/include/U2Core/U2Alphabet.h

src/include/U2Core/U2Annotation.h

src/include/U2Core/U2AnnotationUtils.h

src/include/U2Core/U2AnnotationsDbi.h

src/include/U2Core/U2Assembly.h

src/include/U2Core/U2AssemblyDbi.h

src/include/U2Core/U2AssemblyUtils.h

src/include/U2Core/U2Attribute.h

src/include/U2Core/U2AttributeDbi.h

src/include/U2Core/U2AttributeUtils.h

src/include/U2Core/U2Bits.h

src/include/U2Core/U2CoreAttributes.h

src/include/U2Core/U2CrossDatabaseReferenceDbi.h

src/include/U2Core/U2Dbi.h

src/include/U2Core/U2DbiRegistry.h

src/include/U2Core/U2DbiUtils.h

src/include/U2Core/U2Msa.h

src/include/U2Core/U2MsaDbi.h

src/include/U2Core/U2ObjectDbi.h

src/include/U2Core/U2OpStatus.h

src/include/U2Core/U2OpStatusUtils.h

src/include/U2Core/U2Range.h

src/include/U2Core/U2Region.h

src/include/U2Core/U2SafePoints.h

src/include/U2Core/U2Sequence.h

src/include/U2Core/U2SequenceDbi.h

src/include/U2Core/U2SqlHelpers.h

src/include/U2Core/U2Type.h

src/include/U2Core/UIndex.h

src/include/U2Core/UIndexObject.h

src/include/U2Core/UnloadedObject.h

src/include/U2Core/UserApplicationsSettings.h

src/include/U2Core/VFSAdapter.h

src/include/U2Core/Vector3D.h

src/include/U2Core/Version.h

src/include/U2Core/VirtualFileSystem.h

src/include/U2Core/ZlibAdapter.h

src/include/U2Core/global.h

src/include/U2Designer

src/include/U2Designer/DelegateEditors.h

src/include/U2Designer/DesignerUtils.h

src/include/U2Designer/QDScheduler.h

src/include/U2Designer/WorkflowGUIUtils.h

src/include/U2Formats

src/include/U2Formats/ABIFormat.h

src/include/U2Formats/ACEFormat.h

src/include/U2Formats/ASNFormat.h

src/include/U2Formats/ClustalWAlnFormat.h

src/include/U2Formats/ConvertAssemblyToSamTask.h

src/include/U2Formats/DocumentFormatUtils.h

src/include/U2Formats/DocumentFormats.h

src/include/U2Formats/EMBLGenbankAbstractDocument.h

src/include/U2Formats/EMBLPlainTextFormat.h

src/include/U2Formats/FastaFormat.h

src/include/U2Formats/FastqFormat.h

src/include/U2Formats/GFFFormat.h

src/include/U2Formats/GenbankFeatures.h

src/include/U2Formats/GenbankLocationParser.h

src/include/U2Formats/GenbankPlainTextFormat.h

src/include/U2Formats/IndexFormat.h

src/include/U2Formats/MSFFormat.h

src/include/U2Formats/MegaFormat.h

src/include/U2Formats/NEXUSFormat.h

src/include/U2Formats/NEXUSParser.h

src/include/U2Formats/NewickFormat.h

src/include/U2Formats/PDBFormat.h

src/include/U2Formats/PDWFormat.h

src/include/U2Formats/PlainTextFormat.h

src/include/U2Formats/RawDNASequenceFormat.h

src/include/U2Formats/SAMFormat.h

src/include/U2Formats/SCFFormat.h

src/include/U2Formats/SRFastaFormat.h

src/include/U2Formats/StockholmFormat.h

src/include/U2Formats/StreamSequenceReader.h

src/include/U2Formats/StreamSequenceWriter.h

src/include/U2Formats/SwissProtPlainTextFormat.h

src/include/U2Gui

src/include/U2Gui/AddNewDocumentDialogController.h

src/include/U2Gui/AnnotationSettingsDialogController.h

src/include/U2Gui/AppSettingsGUI.h

src/include/U2Gui/BaseDocumentFormatConfigurators.h

src/include/U2Gui/CopyDocumentDialogController.h

src/include/U2Gui/CreateAnnotationDialog.h

src/include/U2Gui/CreateAnnotationWidgetController.h

src/include/U2Gui/CreateDocumentFromTextDialogController.h

src/include/U2Gui/CreateObjectRelationDialogController.h

src/include/U2Gui/DocumentFormatComboboxController.h

src/include/U2Gui/DownloadRemoteFileDialog.h

src/include/U2Gui/EditQualifierDialog.h

src/include/U2Gui/EditSequenceDialogController.h

src/include/U2Gui/ExportImageDialog.h

src/include/U2Gui/GObjectComboBoxController.h

src/include/U2Gui/GUIUtils.h

src/include/U2Gui/LogView.h

src/include/U2Gui/MainWindow.h

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src/plugins/dbi_file

src/plugins/dbi_file/dbi_file.pri

src/plugins/dbi_file/dbi_file.pro

src/plugins/dbi_file/src

src/plugins/dbi_file/src/FileDbi.cpp

src/plugins/dbi_file/src/FileDbi.h

src/plugins/dbi_file/src/FileDbiPlugin.cpp

src/plugins/dbi_file/src/FileDbiPlugin.h

src/plugins/dbi_sqlite

src/plugins/dbi_sqlite/dbi_sqlite.pri

src/plugins/dbi_sqlite/dbi_sqlite.pro

src/plugins/dbi_sqlite/src

src/plugins/dbi_sqlite/src/SQLiteAssemblyDbi.cpp

src/plugins/dbi_sqlite/src/SQLiteAssemblyDbi.h

src/plugins/dbi_sqlite/src/SQLiteAttributeDbi.cpp

src/plugins/dbi_sqlite/src/SQLiteAttributeDbi.h

src/plugins/dbi_sqlite/src/SQLiteDbi.cpp

src/plugins/dbi_sqlite/src/SQLiteDbi.h

src/plugins/dbi_sqlite/src/SQLiteDbiPlugin.cpp

src/plugins/dbi_sqlite/src/SQLiteDbiPlugin.h

src/plugins/dbi_sqlite/src/SQLiteMsaDbi.cpp

src/plugins/dbi_sqlite/src/SQLiteMsaDbi.h

src/plugins/dbi_sqlite/src/SQLiteObjectDbi.cpp

src/plugins/dbi_sqlite/src/SQLiteObjectDbi.h

src/plugins/dbi_sqlite/src/SQLiteSequenceDbi.cpp

src/plugins/dbi_sqlite/src/SQLiteSequenceDbi.h

src/plugins/dbi_sqlite/src/assembly

src/plugins/dbi_sqlite/src/assembly/AssemblyPackAlgorithm.cpp

src/plugins/dbi_sqlite/src/assembly/AssemblyPackAlgorithm.h

src/plugins/dbi_sqlite/src/assembly/MultiTableAssemblyAdapter.cpp

src/plugins/dbi_sqlite/src/assembly/MultiTableAssemblyAdapter.h

src/plugins/dbi_sqlite/src/assembly/RTreeAssemblyAdapter.cpp

src/plugins/dbi_sqlite/src/assembly/RTreeAssemblyAdapter.h

src/plugins/dbi_sqlite/src/assembly/SingleTableAssemblyAdapter.cpp

src/plugins/dbi_sqlite/src/assembly/SingleTableAssemblyAdapter.h

src/plugins/dna_export/src/CSVColumnConfiguration.h

src/plugins/dna_export/src/CSVColumnConfigurationDialog.cpp

src/plugins/dna_export/src/CSVColumnConfigurationDialog.h

src/plugins/dna_export/src/DNAExportPluginTests.cpp

src/plugins/dna_export/src/DNAExportPluginTests.h

src/plugins/dna_export/src/DNASequenceGenerator.cpp

src/plugins/dna_export/src/DNASequenceGenerator.h

src/plugins/dna_export/src/DNASequenceGeneratorDialog.cpp

src/plugins/dna_export/src/DNASequenceGeneratorDialog.h

src/plugins/dna_export/src/ExportAlignmentViewItems.cpp

src/plugins/dna_export/src/ExportAlignmentViewItems.h

src/plugins/dna_export/src/ExportAnnotations2CSVTask.cpp

src/plugins/dna_export/src/ExportAnnotations2CSVTask.h

src/plugins/dna_export/src/ExportAnnotationsDialog.cpp

src/plugins/dna_export/src/ExportAnnotationsDialog.h

src/plugins/dna_export/src/ExportChromatogramDialog.cpp

src/plugins/dna_export/src/ExportChromatogramDialog.h

src/plugins/dna_export/src/ExportMSA2MSADialog.cpp

src/plugins/dna_export/src/ExportMSA2MSADialog.h

src/plugins/dna_export/src/ExportMSA2SequencesDialog.cpp

src/plugins/dna_export/src/ExportMSA2SequencesDialog.h

src/plugins/dna_export/src/ExportProjectViewItems.cpp

src/plugins/dna_export/src/ExportProjectViewItems.h

src/plugins/dna_export/src/ExportSequenceTask.cpp

src/plugins/dna_export/src/ExportSequenceTask.h

src/plugins/dna_export/src/ExportSequenceViewItems.cpp

src/plugins/dna_export/src/ExportSequenceViewItems.h

src/plugins/dna_export/src/ExportSequences2MSADialog.cpp

src/plugins/dna_export/src/ExportSequences2MSADialog.h

src/plugins/dna_export/src/ExportSequencesDialog.cpp

src/plugins/dna_export/src/ExportSequencesDialog.h

src/plugins/dna_export/src/ExportTasks.cpp

src/plugins/dna_export/src/ExportTasks.h

src/plugins/dna_export/src/ExportUtils.cpp

src/plugins/dna_export/src/ExportUtils.h

src/plugins/dna_export/src/GenerateDNAWorker.cpp

src/plugins/dna_export/src/GenerateDNAWorker.h

src/plugins/dna_export/src/GetSequenceByIdDialog.cpp

src/plugins/dna_export/src/GetSequenceByIdDialog.h

src/plugins/dna_export/src/ImportAnnotationsFromCSVDialog.cpp

src/plugins/dna_export/src/ImportAnnotationsFromCSVDialog.h

src/plugins/dna_export/src/ImportAnnotationsFromCSVTask.cpp

src/plugins/dna_export/src/ImportAnnotationsFromCSVTask.h

src/plugins/dna_export/src/ImportQualityScoresTask.cpp

src/plugins/dna_export/src/ImportQualityScoresTask.h

src/plugins/dna_export/src/ImportQualityScoresWorker.cpp

src/plugins/dna_export/src/ImportQualityScoresWorker.h

src/plugins/dna_export/src/WriteAnnotationsWorker.cpp

src/plugins/dna_export/src/WriteAnnotationsWorker.h

src/plugins/dna_export/src/ui/BaseContentDialog.ui

src/plugins/dna_export/src/ui/CSVColumnConfigurationDialog.ui

src/plugins/dna_export/src/ui/DNASequenceGeneratorDialog.ui

src/plugins/dna_export/src/ui/ExportAnnotationsDialog.ui

src/plugins/dna_export/src/ui/ExportChromatogramDialog.ui

src/plugins/dna_export/src/ui/ExportMSA2MSADialog.ui

src/plugins/dna_export/src/ui/ExportMSA2SequencesDialog.ui

src/plugins/dna_export/src/ui/ExportSequences2MSADialog.ui

src/plugins/dna_export/src/ui/ExportSequencesDialog.ui

src/plugins/dna_export/src/ui/GetSequenceByIdDialog.ui

src/plugins/dna_export/src/ui/ImportAnnotationsFromCSVDialog.ui

src/plugins/dna_export/transl/czech.ts

src/plugins/dna_flexibility

src/plugins/dna_flexibility/dna_flexibility.pri

src/plugins/dna_flexibility/dna_flexibility.pro

src/plugins/dna_flexibility/dna_flexibility.qrc

src/plugins/dna_flexibility/images

src/plugins/dna_flexibility/images/flexibility.png

src/plugins/dna_flexibility/src

src/plugins/dna_flexibility/src/DNAFlexDialog.cpp

src/plugins/dna_flexibility/src/DNAFlexDialog.h

src/plugins/dna_flexibility/src/DNAFlexPlugin.cpp

src/plugins/dna_flexibility/src/DNAFlexPlugin.h

src/plugins/dna_flexibility/src/DNAFlexTask.cpp

src/plugins/dna_flexibility/src/DNAFlexTask.h

src/plugins/dna_flexibility/src/FindHighFlexRegions.cpp

src/plugins/dna_flexibility/src/FindHighFlexRegions.h

src/plugins/dna_flexibility/src/FindHighFlexRegionsAlgorithm.cpp

src/plugins/dna_flexibility/src/FindHighFlexRegionsAlgorithm.h

src/plugins/dna_flexibility/src/HighFlexResult.h

src/plugins/dna_flexibility/src/HighFlexSettings.cpp

src/plugins/dna_flexibility/src/HighFlexSettings.h

src/plugins/dna_flexibility/src/ui

src/plugins/dna_flexibility/src/ui/DNAFlexDialog.ui

src/plugins/dna_flexibility/transl

src/plugins/dna_flexibility/transl/english.ts

src/plugins/dna_flexibility/transl/russian.ts

src/plugins/dna_graphpack/transl/czech.ts

src/plugins/dna_stat

src/plugins/dna_stat/dna_stat.pri

src/plugins/dna_stat/dna_stat.pro

src/plugins/dna_stat/src

src/plugins/dna_stat/src/DNAStatMSAProfileDialog.cpp

src/plugins/dna_stat/src/DNAStatMSAProfileDialog.h

src/plugins/dna_stat/src/DNAStatPlugin.cpp

src/plugins/dna_stat/src/DNAStatPlugin.h

src/plugins/dna_stat/src/DistanceMatrixMSAProfileDialog.cpp

src/plugins/dna_stat/src/DistanceMatrixMSAProfileDialog.h

src/plugins/dna_stat/src/ui

src/plugins/dna_stat/src/ui/DNAStatMSAProfileDialog.ui

src/plugins/dna_stat/src/ui/DistanceMatrixMSAProfileDialog.ui

src/plugins/dna_stat/transl

src/plugins/dna_stat/transl/czech.ts

src/plugins/dna_stat/transl/english.ts

src/plugins/dna_stat/transl/russian.ts

src/plugins/dotplot

src/plugins/dotplot/dotplot.pri

src/plugins/dotplot/dotplot.pro

src/plugins/dotplot/dotplot.qrc

src/plugins/dotplot/images

src/plugins/dotplot/images/cursor.png

src/plugins/dotplot/images/dotplot.png

src/plugins/dotplot/images/exit.png

src/plugins/dotplot/images/hand_icon.png

src/plugins/dotplot/images/lock.png

src/plugins/dotplot/src

src/plugins/dotplot/src/DotPlotClasses.cpp

src/plugins/dotplot/src/DotPlotClasses.h

src/plugins/dotplot/src/DotPlotDialog.cpp

src/plugins/dotplot/src/DotPlotDialog.h

src/plugins/dotplot/src/DotPlotFilesDialog.cpp

src/plugins/dotplot/src/DotPlotFilesDialog.h

src/plugins/dotplot/src/DotPlotPlugin.cpp

src/plugins/dotplot/src/DotPlotPlugin.h

src/plugins/dotplot/src/DotPlotSplitter.cpp

src/plugins/dotplot/src/DotPlotSplitter.h

src/plugins/dotplot/src/DotPlotTasks.cpp

src/plugins/dotplot/src/DotPlotTasks.h

src/plugins/dotplot/src/DotPlotWidget.cpp

src/plugins/dotplot/src/DotPlotWidget.h

src/plugins/dotplot/src/ui

src/plugins/dotplot/src/ui/DotPlotDialog.ui

src/plugins/dotplot/src/ui/DotPlotFilesDialog.ui

src/plugins/dotplot/transl

src/plugins/dotplot/transl/czech.ts

src/plugins/dotplot/transl/english.ts

src/plugins/dotplot/transl/russian.ts

src/plugins/enzymes

src/plugins/enzymes/enzymes.pri

src/plugins/enzymes/enzymes.pro

src/plugins/enzymes/enzymes.qrc

src/plugins/enzymes/images

src/plugins/enzymes/images/enzymes.png

src/plugins/enzymes/src

src/plugins/enzymes/src/CloningUtilTasks.cpp

src/plugins/enzymes/src/CloningUtilTasks.h

src/plugins/enzymes/src/ConstructMoleculeDialog.cpp

src/plugins/enzymes/src/ConstructMoleculeDialog.h

src/plugins/enzymes/src/CreateFragmentDialog.cpp

src/plugins/enzymes/src/CreateFragmentDialog.h

src/plugins/enzymes/src/DNAFragment.cpp

src/plugins/enzymes/src/DNAFragment.h

src/plugins/enzymes/src/DigestSequenceDialog.cpp

src/plugins/enzymes/src/DigestSequenceDialog.h

src/plugins/enzymes/src/EditFragmentDialog.cpp

src/plugins/enzymes/src/EditFragmentDialog.h

src/plugins/enzymes/src/EnzymesIO.cpp

src/plugins/enzymes/src/EnzymesIO.h

src/plugins/enzymes/src/EnzymesPlugin.cpp

src/plugins/enzymes/src/EnzymesPlugin.h

src/plugins/enzymes/src/EnzymesQuery.cpp

src/plugins/enzymes/src/EnzymesQuery.h

src/plugins/enzymes/src/EnzymesTests.cpp

src/plugins/enzymes/src/EnzymesTests.h

src/plugins/enzymes/src/FindEnzymesAlgorithm.h

src/plugins/enzymes/src/FindEnzymesDialog.cpp

src/plugins/enzymes/src/FindEnzymesDialog.h

src/plugins/enzymes/src/FindEnzymesTask.cpp

src/plugins/enzymes/src/FindEnzymesTask.h

src/plugins/enzymes/src/ui

src/plugins/enzymes/src/ui/ConstructMoleculeDialog.ui

src/plugins/enzymes/src/ui/CreateFragmentDialog.ui

src/plugins/enzymes/src/ui/DigestSequenceDialog.ui

src/plugins/enzymes/src/ui/EditFragmentDialog.ui

src/plugins/enzymes/src/ui/EnzymesSelectorDialog.ui

src/plugins/enzymes/src/ui/EnzymesSelectorWidget.ui

src/plugins/enzymes/src/ui/FindEnzymesDialog.ui

src/plugins/enzymes/transl

src/plugins/enzymes/transl/czech.ts

src/plugins/enzymes/transl/english.ts

src/plugins/enzymes/transl/russian.ts

src/plugins/expert_discovery

src/plugins/expert_discovery/expert_discovery.pri

src/plugins/expert_discovery/expert_discovery.pro

src/plugins/expert_discovery/expert_discovery.qrc

src/plugins/expert_discovery/images

src/plugins/expert_discovery/images/ExpertDiscovery.ico

src/plugins/expert_discovery/images/ExpertDiscoveryDoc.ico

src/plugins/expert_discovery/images/ExpertDiscoveryDoc.png

src/plugins/expert_discovery/images/control.ico

src/plugins/expert_discovery/images/control.png

src/plugins/expert_discovery/images/cs.ico

src/plugins/expert_discovery/images/cs.png

src/plugins/expert_discovery/images/csroot.ico

src/plugins/expert_discovery/images/csroot.png

src/plugins/expert_discovery/images/distance.ico

src/plugins/expert_discovery/images/distance.png

src/plugins/expert_discovery/images/extractSignals.ico

src/plugins/expert_discovery/images/extractSignals.png

src/plugins/expert_discovery/images/extractSignals2.ico

src/plugins/expert_discovery/images/extractSignals2.png

src/plugins/expert_discovery/images/filenew.png

src/plugins/expert_discovery/images/fileopen.png

src/plugins/expert_discovery/images/filesave.png

src/plugins/expert_discovery/images/folder.ico

src/plugins/expert_discovery/images/folder.png

src/plugins/expert_discovery/images/genRep.ico

src/plugins/expert_discovery/images/genRep.png

src/plugins/expert_discovery/images/icon1.ico

src/plugins/expert_discovery/images/icon1.png

src/plugins/expert_discovery/images/interval.ico

src/plugins/expert_discovery/images/interval.png

src/plugins/expert_discovery/images/loadControlsSeq.ico

src/plugins/expert_discovery/images/loadControlsSeq.png

src/plugins/expert_discovery/images/loadControlsSeqAnnot.ico

src/plugins/expert_discovery/images/loadControlsSeqAnnot.png

src/plugins/expert_discovery/images/loadMarkup.ico

src/plugins/expert_discovery/images/loadMarkup.png

src/plugins/expert_discovery/images/mrkroot.ico

src/plugins/expert_discovery/images/mrkroot.png

src/plugins/expert_discovery/images/negseq.ico

src/plugins/expert_discovery/images/negseq.png

src/plugins/expert_discovery/images/newDoc.ico

src/plugins/expert_discovery/images/newDoc.png

src/plugins/expert_discovery/images/optRecBound.ico

src/plugins/expert_discovery/images/optRecBound.png

src/plugins/expert_discovery/images/posseq.ico

src/plugins/expert_discovery/images/posseq.png

src/plugins/expert_discovery/images/repetition.ico

src/plugins/expert_discovery/images/repetition.png

src/plugins/expert_discovery/images/sequence.ico

src/plugins/expert_discovery/images/sequence.png

src/plugins/expert_discovery/images/sequences.ico

src/plugins/expert_discovery/images/sequences.png

src/plugins/expert_discovery/images/setRecBound.ico

src/plugins/expert_discovery/images/setRecBound.png

src/plugins/expert_discovery/images/ts.ico

src/plugins/expert_discovery/images/ts.png

src/plugins/expert_discovery/images/undefined.ico

src/plugins/expert_discovery/images/undefined.png

src/plugins/expert_discovery/src

src/plugins/expert_discovery/src/DDisc

src/plugins/expert_discovery/src/DDisc/Context.cpp

src/plugins/expert_discovery/src/DDisc/Context.h

src/plugins/expert_discovery/src/DDisc/Definitions.cpp

src/plugins/expert_discovery/src/DDisc/Extractor.cpp

src/plugins/expert_discovery/src/DDisc/Extractor.h

src/plugins/expert_discovery/src/DDisc/MetaInfo.cpp

src/plugins/expert_discovery/src/DDisc/MetaInfo.h

src/plugins/expert_discovery/src/DDisc/Sequence.cpp

src/plugins/expert_discovery/src/DDisc/Sequence.h

src/plugins/expert_discovery/src/DDisc/Signal.cpp

src/plugins/expert_discovery/src/DDisc/Signal.h

src/plugins/expert_discovery/src/DDisc/definitions.h

src/plugins/expert_discovery/src/DDisc/statmath.cpp

src/plugins/expert_discovery/src/DDisc/statmath.h

src/plugins/expert_discovery/src/ExpertDiscoveryAdvSetDialog.cpp

src/plugins/expert_discovery/src/ExpertDiscoveryAdvSetDialog.h

src/plugins/expert_discovery/src/ExpertDiscoveryCSUtil.cpp

src/plugins/expert_discovery/src/ExpertDiscoveryCSUtil.h

src/plugins/expert_discovery/src/ExpertDiscoveryControlDialog.cpp

src/plugins/expert_discovery/src/ExpertDiscoveryControlDialog.h

src/plugins/expert_discovery/src/ExpertDiscoveryControlMrkDialog.cpp

src/plugins/expert_discovery/src/ExpertDiscoveryControlMrkDialog.h

src/plugins/expert_discovery/src/ExpertDiscoveryData.cpp

src/plugins/expert_discovery/src/ExpertDiscoveryData.h

src/plugins/expert_discovery/src/ExpertDiscoveryExtSigWiz.cpp

src/plugins/expert_discovery/src/ExpertDiscoveryExtSigWiz.h

src/plugins/expert_discovery/src/ExpertDiscoveryPersistent.cpp

src/plugins/expert_discovery/src/ExpertDiscoveryPersistent.h

src/plugins/expert_discovery/src/ExpertDiscoveryPlugin.cpp

src/plugins/expert_discovery/src/ExpertDiscoveryPlugin.h

src/plugins/expert_discovery/src/ExpertDiscoveryPosNegDialog.cpp

src/plugins/expert_discovery/src/ExpertDiscoveryPosNegDialog.h

src/plugins/expert_discovery/src/ExpertDiscoveryPosNegMrkDialog.cpp

src/plugins/expert_discovery/src/ExpertDiscoveryPosNegMrkDialog.h

src/plugins/expert_discovery/src/ExpertDiscoveryPropTable.cpp

src/plugins/expert_discovery/src/ExpertDiscoveryPropTable.h

src/plugins/expert_discovery/src/ExpertDiscoverySet.cpp

src/plugins/expert_discovery/src/ExpertDiscoverySet.h

src/plugins/expert_discovery/src/ExpertDiscoverySetupRecBoundDialog.cpp

src/plugins/expert_discovery/src/ExpertDiscoverySetupRecBoundDialog.h

src/plugins/expert_discovery/src/ExpertDiscoveryTask.cpp

src/plugins/expert_discovery/src/ExpertDiscoveryTask.h

src/plugins/expert_discovery/src/ExpertDiscoveryTreeWidgets.cpp

src/plugins/expert_discovery/src/ExpertDiscoveryTreeWidgets.h

src/plugins/expert_discovery/src/ExpertDiscoveryTreeWidgetsCtrl.cpp

src/plugins/expert_discovery/src/ExpertDiscoveryTreeWidgetsCtrl.h

src/plugins/expert_discovery/src/ExpertDiscoveryView.cpp

src/plugins/expert_discovery/src/ExpertDiscoveryView.h

src/plugins/expert_discovery/src/ExpertDiscoveryViewCtx.cpp

src/plugins/expert_discovery/src/ExpertDiscoveryViewCtx.h

src/plugins/expert_discovery/src/ui

src/plugins/expert_discovery/src/ui/ExpertDiscoveryAdvSetDialog.ui

src/plugins/expert_discovery/src/ui/ExpertDiscoveryControlDialog.ui

src/plugins/expert_discovery/src/ui/ExpertDiscoveryControlMrkDialog.ui

src/plugins/expert_discovery/src/ui/ExpertDiscoveryPosNegDialog.ui

src/plugins/expert_discovery/src/ui/ExpertDiscoveryPosNegMrkDialog.ui

src/plugins/expert_discovery/src/ui/ExpertDiscoverySetupRecBoundDialog.ui

src/plugins/expert_discovery/src/ui/ExpertDiscoverySigExtrWiz.ui

src/plugins/expert_discovery/transl

src/plugins/expert_discovery/transl/czech.ts

src/plugins/expert_discovery/transl/english.ts

src/plugins/expert_discovery/transl/russian.ts

src/plugins/external_tool_support

src/plugins/external_tool_support/external_tool_support.pri

src/plugins/external_tool_support/external_tool_support.pro

src/plugins/external_tool_support/external_tool_support.qrc

src/plugins/external_tool_support/images

src/plugins/external_tool_support/images/cancel.png

src/plugins/external_tool_support/images/clustalx.jpg

src/plugins/external_tool_support/images/clustalx.png

src/plugins/external_tool_support/images/clustalx_gray.png

src/plugins/external_tool_support/images/clustalx_warn.png

src/plugins/external_tool_support/images/cmdline.png

src/plugins/external_tool_support/images/cmdline_gray.png

src/plugins/external_tool_support/images/cmdline_warn.png

src/plugins/external_tool_support/images/editdelete.png

src/plugins/external_tool_support/images/ncbi.png

src/plugins/external_tool_support/images/ncbi_gray.png

src/plugins/external_tool_support/images/ncbi_warn.png

src/plugins/external_tool_support/images/tcoffee.png

src/plugins/external_tool_support/images/tcoffee_gray.png

src/plugins/external_tool_support/images/tcoffee_warn.png

src/plugins/external_tool_support/src

src/plugins/external_tool_support/src/ETSProjectViewItemsContoller.cpp

src/plugins/external_tool_support/src/ETSProjectViewItemsContoller.h

src/plugins/external_tool_support/src/ExternalToolRunTask.cpp

src/plugins/external_tool_support/src/ExternalToolRunTask.h

src/plugins/external_tool_support/src/ExternalToolSupportPlugin.cpp

src/plugins/external_tool_support/src/ExternalToolSupportPlugin.h

src/plugins/external_tool_support/src/ExternalToolSupportSettings.cpp

src/plugins/external_tool_support/src/ExternalToolSupportSettings.h

src/plugins/external_tool_support/src/ExternalToolSupportSettingsController.cpp

src/plugins/external_tool_support/src/ExternalToolSupportSettingsController.h

src/plugins/external_tool_support/src/TaskLocalStorage.cpp

src/plugins/external_tool_support/src/TaskLocalStorage.h

src/plugins/external_tool_support/src/blast

src/plugins/external_tool_support/src/blast/BlastAllSupport.cpp

src/plugins/external_tool_support/src/blast/BlastAllSupport.h

src/plugins/external_tool_support/src/blast/BlastAllSupportRunDialog.cpp

src/plugins/external_tool_support/src/blast/BlastAllSupportRunDialog.h

src/plugins/external_tool_support/src/blast/BlastAllSupportTask.cpp

src/plugins/external_tool_support/src/blast/BlastAllSupportTask.h

src/plugins/external_tool_support/src/blast/BlastAllWorker.cpp

src/plugins/external_tool_support/src/blast/BlastAllWorker.h

src/plugins/external_tool_support/src/blast/FormatDBSupport.cpp

src/plugins/external_tool_support/src/blast/FormatDBSupport.h

src/plugins/external_tool_support/src/blast/FormatDBSupportRunDialog.cpp

src/plugins/external_tool_support/src/blast/FormatDBSupportRunDialog.h

src/plugins/external_tool_support/src/blast/FormatDBSupportTask.cpp

src/plugins/external_tool_support/src/blast/FormatDBSupportTask.h

src/plugins/external_tool_support/src/blast_plus

src/plugins/external_tool_support/src/blast_plus/BlastNPlusSupportTask.cpp

src/plugins/external_tool_support/src/blast_plus/BlastNPlusSupportTask.h

src/plugins/external_tool_support/src/blast_plus/BlastPPlusSupportTask.cpp

src/plugins/external_tool_support/src/blast_plus/BlastPPlusSupportTask.h

src/plugins/external_tool_support/src/blast_plus/BlastPlusSupport.cpp

src/plugins/external_tool_support/src/blast_plus/BlastPlusSupport.h

src/plugins/external_tool_support/src/blast_plus/BlastPlusSupportCommonTask.cpp

src/plugins/external_tool_support/src/blast_plus/BlastPlusSupportCommonTask.h

src/plugins/external_tool_support/src/blast_plus/BlastPlusSupportRunDialog.cpp

src/plugins/external_tool_support/src/blast_plus/BlastPlusSupportRunDialog.h

src/plugins/external_tool_support/src/blast_plus/BlastPlusWorker.cpp

src/plugins/external_tool_support/src/blast_plus/BlastPlusWorker.h

src/plugins/external_tool_support/src/blast_plus/BlastXPlusSupportTask.cpp

src/plugins/external_tool_support/src/blast_plus/BlastXPlusSupportTask.h

src/plugins/external_tool_support/src/blast_plus/RPSBlastSupportTask.cpp

src/plugins/external_tool_support/src/blast_plus/RPSBlastSupportTask.h

src/plugins/external_tool_support/src/blast_plus/TBlastNPlusSupportTask.cpp

src/plugins/external_tool_support/src/blast_plus/TBlastNPlusSupportTask.h

src/plugins/external_tool_support/src/blast_plus/TBlastXPlusSupportTask.cpp

src/plugins/external_tool_support/src/blast_plus/TBlastXPlusSupportTask.h

src/plugins/external_tool_support/src/cap3

src/plugins/external_tool_support/src/cap3/CAP3Support.cpp

src/plugins/external_tool_support/src/cap3/CAP3Support.h

src/plugins/external_tool_support/src/cap3/CAP3SupportDialog.cpp

src/plugins/external_tool_support/src/cap3/CAP3SupportDialog.h

src/plugins/external_tool_support/src/cap3/CAP3SupportTask.cpp

src/plugins/external_tool_support/src/cap3/CAP3SupportTask.h

src/plugins/external_tool_support/src/cap3/CAP3Worker.cpp

src/plugins/external_tool_support/src/cap3/CAP3Worker.h

src/plugins/external_tool_support/src/clustalw

src/plugins/external_tool_support/src/clustalw/ClustalWSupport.cpp

src/plugins/external_tool_support/src/clustalw/ClustalWSupport.h

src/plugins/external_tool_support/src/clustalw/ClustalWSupportRunDialog.cpp

src/plugins/external_tool_support/src/clustalw/ClustalWSupportRunDialog.h

src/plugins/external_tool_support/src/clustalw/ClustalWSupportTask.cpp

src/plugins/external_tool_support/src/clustalw/ClustalWSupportTask.h

src/plugins/external_tool_support/src/clustalw/ClustalWWorker.cpp

src/plugins/external_tool_support/src/clustalw/ClustalWWorker.h

src/plugins/external_tool_support/src/mafft

src/plugins/external_tool_support/src/mafft/MAFFTSupport.cpp

src/plugins/external_tool_support/src/mafft/MAFFTSupport.h

src/plugins/external_tool_support/src/mafft/MAFFTSupportRunDialog.cpp

src/plugins/external_tool_support/src/mafft/MAFFTSupportRunDialog.h

src/plugins/external_tool_support/src/mafft/MAFFTSupportTask.cpp

src/plugins/external_tool_support/src/mafft/MAFFTSupportTask.h

src/plugins/external_tool_support/src/mafft/MAFFTWorker.cpp

src/plugins/external_tool_support/src/mafft/MAFFTWorker.h

src/plugins/external_tool_support/src/tcoffee

src/plugins/external_tool_support/src/tcoffee/TCoffeeSupport.cpp

src/plugins/external_tool_support/src/tcoffee/TCoffeeSupport.h

src/plugins/external_tool_support/src/tcoffee/TCoffeeSupportRunDialog.cpp

src/plugins/external_tool_support/src/tcoffee/TCoffeeSupportRunDialog.h

src/plugins/external_tool_support/src/tcoffee/TCoffeeSupportTask.cpp

src/plugins/external_tool_support/src/tcoffee/TCoffeeSupportTask.h

src/plugins/external_tool_support/src/tcoffee/TCoffeeWorker.cpp

src/plugins/external_tool_support/src/tcoffee/TCoffeeWorker.h

src/plugins/external_tool_support/src/ui

src/plugins/external_tool_support/src/ui/BlastAllSupportDialog.ui

src/plugins/external_tool_support/src/ui/CAP3SupportDialog.ui

src/plugins/external_tool_support/src/ui/ClustalWSupportRunDialog.ui

src/plugins/external_tool_support/src/ui/ETSSettingsWidget.ui

src/plugins/external_tool_support/src/ui/FormatDBSupportRunDialog.ui

src/plugins/external_tool_support/src/ui/MAFFTSupportRunDialog.ui

src/plugins/external_tool_support/src/ui/SelectPathDialog.ui

src/plugins/external_tool_support/src/ui/TCoffeeSupportRunDialog.ui

src/plugins/external_tool_support/src/utils

src/plugins/external_tool_support/src/utils/BlastRunCommonDialog.cpp

src/plugins/external_tool_support/src/utils/BlastRunCommonDialog.h

src/plugins/external_tool_support/src/utils/BlastTaskSettings.cpp

src/plugins/external_tool_support/src/utils/BlastTaskSettings.h

src/plugins/external_tool_support/src/utils/ExportTasks.cpp

src/plugins/external_tool_support/src/utils/ExportTasks.h

src/plugins/external_tool_support/src/utils/ExternalToolSupportAction.cpp

src/plugins/external_tool_support/src/utils/ExternalToolSupportAction.h

src/plugins/external_tool_support/src/utils/ExternalToolValidateTask.cpp

src/plugins/external_tool_support/src/utils/ExternalToolValidateTask.h

src/plugins/external_tool_support/transl

src/plugins/external_tool_support/transl/english.ts

src/plugins/external_tool_support/transl/russian.ts

src/plugins/genome_aligner

src/plugins/genome_aligner/genome_aligner.pri

src/plugins/genome_aligner/genome_aligner.pro

src/plugins/genome_aligner/src

src/plugins/genome_aligner/src/BuildSArraySettingsWidget.cpp

src/plugins/genome_aligner/src/BuildSArraySettingsWidget.h

src/plugins/genome_aligner/src/GenomeAlignerCMDLineTask.cpp

src/plugins/genome_aligner/src/GenomeAlignerCMDLineTask.h

src/plugins/genome_aligner/src/GenomeAlignerFindTask.cpp

src/plugins/genome_aligner/src/GenomeAlignerFindTask.h

src/plugins/genome_aligner/src/GenomeAlignerIO.cpp

src/plugins/genome_aligner/src/GenomeAlignerIO.h

src/plugins/genome_aligner/src/GenomeAlignerIndex.cpp

src/plugins/genome_aligner/src/GenomeAlignerIndex.h

src/plugins/genome_aligner/src/GenomeAlignerIndexPart.cpp

src/plugins/genome_aligner/src/GenomeAlignerIndexPart.h

src/plugins/genome_aligner/src/GenomeAlignerIndexTask.cpp

src/plugins/genome_aligner/src/GenomeAlignerIndexTask.h

src/plugins/genome_aligner/src/GenomeAlignerPlugin.cpp

src/plugins/genome_aligner/src/GenomeAlignerPlugin.h

src/plugins/genome_aligner/src/GenomeAlignerSearchQuery.cpp

src/plugins/genome_aligner/src/GenomeAlignerSearchQuery.h

src/plugins/genome_aligner/src/GenomeAlignerSettingsWidget.cpp

src/plugins/genome_aligner/src/GenomeAlignerSettingsWidget.h

src/plugins/genome_aligner/src/GenomeAlignerTask.cpp

src/plugins/genome_aligner/src/GenomeAlignerTask.h

src/plugins/genome_aligner/src/GenomeAlignerWorker.cpp

src/plugins/genome_aligner/src/GenomeAlignerWorker.h

src/plugins/genome_aligner/src/GenomeAlignerWriteTask.cpp

src/plugins/genome_aligner/src/GenomeAlignerWriteTask.h

src/plugins/genome_aligner/src/SuffixSearchCUDA.cpp

src/plugins/genome_aligner/src/SuffixSearchCUDA.h

src/plugins/genome_aligner/src/suffix_search.cu

src/plugins/genome_aligner/src/ui

src/plugins/genome_aligner/src/ui/BuildSuffixArraySettings.ui

src/plugins/genome_aligner/src/ui/GenomeAlignerSettings.ui

src/plugins/genome_aligner/transl

src/plugins/genome_aligner/transl/english.ts

src/plugins/genome_aligner/transl/russian.ts

src/plugins/opencl_support

src/plugins/opencl_support/opencl_support.pri

src/plugins/opencl_support/opencl_support.pro

src/plugins/opencl_support/src

src/plugins/opencl_support/src/OpenCLSupportPlugin.cpp

src/plugins/opencl_support/src/OpenCLSupportPlugin.h

src/plugins/opencl_support/src/OpenCLSupportSettingsController.cpp

src/plugins/opencl_support/src/OpenCLSupportSettingsController.h

src/plugins/opencl_support/transl

src/plugins/opencl_support/transl/czech.ts

src/plugins/opencl_support/transl/english.ts

src/plugins/opencl_support/transl/russian.ts

src/plugins/orf_marker/src/ORFMarkerTask.cpp

src/plugins/orf_marker/src/ORFMarkerTask.h

src/plugins/orf_marker/src/ORFQuery.cpp

src/plugins/orf_marker/src/ORFQuery.h

src/plugins/orf_marker/transl/czech.ts

src/plugins/query_designer

src/plugins/query_designer/images

src/plugins/query_designer/images/delete.png

src/plugins/query_designer/images/eye.png

src/plugins/query_designer/images/filenew.png

src/plugins/query_designer/images/fileopen.png

src/plugins/query_designer/images/filesave.png

src/plugins/query_designer/images/green_circle.png

src/plugins/query_designer/images/query_designer.png

src/plugins/query_designer/images/run.png

src/plugins/query_designer/images/strands.png

src/plugins/query_designer/query_designer.pri

src/plugins/query_designer/query_designer.pro

src/plugins/query_designer/query_designer.qrc

src/plugins/query_designer/src

src/plugins/query_designer/src/QDDocument.cpp

src/plugins/query_designer/src/QDDocument.h

src/plugins/query_designer/src/QDDocumentFormat.cpp

src/plugins/query_designer/src/QDDocumentFormat.h

src/plugins/query_designer/src/QDGroupsEditor.cpp

src/plugins/query_designer/src/QDGroupsEditor.h

src/plugins/query_designer/src/QDRunDialog.cpp

src/plugins/query_designer/src/QDRunDialog.h

src/plugins/query_designer/src/QDSamples.cpp

src/plugins/query_designer/src/QDSamples.h

src/plugins/query_designer/src/QDSceneIOTasks.cpp

src/plugins/query_designer/src/QDSceneIOTasks.h

src/plugins/query_designer/src/QDTests.cpp

src/plugins/query_designer/src/QDTests.h

src/plugins/query_designer/src/QDWorker.cpp

src/plugins/query_designer/src/QDWorker.h

src/plugins/query_designer/src/QueryDesignerPlugin.cpp

src/plugins/query_designer/src/QueryDesignerPlugin.h

src/plugins/query_designer/src/QueryEditor.cpp

src/plugins/query_designer/src/QueryEditor.h

src/plugins/query_designer/src/QueryPalette.cpp

src/plugins/query_designer/src/QueryPalette.h

src/plugins/query_designer/src/QueryProcCfgDelegate.h

src/plugins/query_designer/src/QueryProcCfgModel.h

src/plugins/query_designer/src/QueryViewAdapter.cpp

src/plugins/query_designer/src/QueryViewAdapter.h

src/plugins/query_designer/src/QueryViewController.cpp

src/plugins/query_designer/src/QueryViewController.h

src/plugins/query_designer/src/QueryViewItems.cpp

src/plugins/query_designer/src/QueryViewItems.h

src/plugins/query_designer/src/library

src/plugins/query_designer/src/library/QDFindActor.cpp

src/plugins/query_designer/src/library/QDFindActor.h

src/plugins/query_designer/src/library/QDFindPolyRegionsActor.cpp

src/plugins/query_designer/src/library/QDFindPolyRegionsActor.h

src/plugins/query_designer/src/ui

src/plugins/query_designer/src/ui/AddConstraintDialog.ui

src/plugins/query_designer/src/ui/QDDialog.ui

src/plugins/query_designer/src/ui/QueryEditorWidget.ui

src/plugins/query_designer/src/ui/RunQueryDialog.ui

src/plugins/query_designer/transl

src/plugins/query_designer/transl/english.ts

src/plugins/query_designer/transl/russian.ts

src/plugins/remote_blast

src/plugins/remote_blast/images

src/plugins/remote_blast/images/down_arrow.png

src/plugins/remote_blast/images/remote_db_request.png

src/plugins/remote_blast/images/up_arrow.png

src/plugins/remote_blast/remote_blast.pri

src/plugins/remote_blast/remote_blast.pro

src/plugins/remote_blast/remote_blast.qrc

src/plugins/remote_blast/src

src/plugins/remote_blast/src/BlastQuery.cpp

src/plugins/remote_blast/src/BlastQuery.h

src/plugins/remote_blast/src/DBRequestFactory.h

src/plugins/remote_blast/src/HttpRequest.h

src/plugins/remote_blast/src/HttpRequestBLAST.cpp

src/plugins/remote_blast/src/HttpRequestCDD.cpp

src/plugins/remote_blast/src/RemoteBLASTConsts.cpp

src/plugins/remote_blast/src/RemoteBLASTConsts.h

src/plugins/remote_blast/src/RemoteBLASTPlugin.cpp

src/plugins/remote_blast/src/RemoteBLASTPlugin.h

src/plugins/remote_blast/src/RemoteBLASTPluginTests.cpp

src/plugins/remote_blast/src/RemoteBLASTPluginTests.h

src/plugins/remote_blast/src/RemoteBLASTTask.cpp

src/plugins/remote_blast/src/RemoteBLASTTask.h

src/plugins/remote_blast/src/RemoteBLASTWorker.cpp

src/plugins/remote_blast/src/RemoteBLASTWorker.h

src/plugins/remote_blast/src/SendSelectionDialog.cpp

src/plugins/remote_blast/src/SendSelectionDialog.h

src/plugins/remote_blast/src/ui

src/plugins/remote_blast/src/ui/RemoteBLASTDialog.ui

src/plugins/remote_blast/transl

src/plugins/remote_blast/transl/czech.ts

src/plugins/remote_blast/transl/english.ts

src/plugins/remote_blast/transl/russian.ts

src/plugins/remote_service

src/plugins/remote_service/remote_service.pri

src/plugins/remote_service/remote_service.pro

src/plugins/remote_service/src

src/plugins/remote_service/src/Base64File.cpp

src/plugins/remote_service/src/Base64File.h

src/plugins/remote_service/src/BufferedDataReader.cpp

src/plugins/remote_service/src/BufferedDataReader.h

src/plugins/remote_service/src/RemoteServiceCommon.h

src/plugins/remote_service/src/RemoteServiceMachine.cpp

src/plugins/remote_service/src/RemoteServiceMachine.h

src/plugins/remote_service/src/RemoteServicePingTask.cpp

src/plugins/remote_service/src/RemoteServicePingTask.h

src/plugins/remote_service/src/RemoteServicePlugin.cpp

src/plugins/remote_service/src/RemoteServicePlugin.h

src/plugins/remote_service/src/RemoteServiceSettingsUI.cpp

src/plugins/remote_service/src/RemoteServiceSettingsUI.h

src/plugins/remote_service/src/RemoteServiceUtilTasks.cpp

src/plugins/remote_service/src/RemoteServiceUtilTasks.h

src/plugins/remote_service/src/RemoteTasksDialog.cpp

src/plugins/remote_service/src/RemoteTasksDialog.h

src/plugins/remote_service/src/UctpRequestBuilders.cpp

src/plugins/remote_service/src/UctpRequestBuilders.h

src/plugins/remote_service/src/WebTransportProtocol.cpp

src/plugins/remote_service/src/WebTransportProtocol.h

src/plugins/remote_service/src/base64

src/plugins/remote_service/src/base64/cdecode.c

src/plugins/remote_service/src/base64/cdecode.h

src/plugins/remote_service/src/base64/cencode.c

src/plugins/remote_service/src/base64/cencode.h

src/plugins/remote_service/src/ui

src/plugins/remote_service/src/ui/RemoteServiceSupportUI.ui

src/plugins/remote_service/src/ui/TaskStatisticsDialog.ui

src/plugins/remote_service/transl

src/plugins/repeat_finder/images

src/plugins/repeat_finder/images/repeats.png

src/plugins/repeat_finder/images/repeats_tandem.png

src/plugins/repeat_finder/repeat_finder.qrc

src/plugins/repeat_finder/src/FindRepeatsDialog.cpp

src/plugins/repeat_finder/src/FindRepeatsDialog.h

src/plugins/repeat_finder/src/FindRepeatsTask.cpp

src/plugins/repeat_finder/src/FindRepeatsTask.h

src/plugins/repeat_finder/src/FindTandemsDialog.cpp

src/plugins/repeat_finder/src/FindTandemsDialog.h

src/plugins/repeat_finder/src/RFBase.cpp

src/plugins/repeat_finder/src/RFBase.h

src/plugins/repeat_finder/src/RFConstants.h

src/plugins/repeat_finder/src/RFDiagonal.cpp

src/plugins/repeat_finder/src/RFDiagonal.h

src/plugins/repeat_finder/src/RFSArray.cpp

src/plugins/repeat_finder/src/RFSArray.h

src/plugins/repeat_finder/src/RFSArrayWK.cpp

src/plugins/repeat_finder/src/RFSArrayWK.h

src/plugins/repeat_finder/src/RFTaskFactory.cpp

src/plugins/repeat_finder/src/RFTaskFactory.h

src/plugins/repeat_finder/src/RF_BitMask.h

src/plugins/repeat_finder/src/RF_SArray_TandemFinder.cpp

src/plugins/repeat_finder/src/RF_SArray_TandemFinder.h

src/plugins/repeat_finder/src/RF_SuffixArray.cpp

src/plugins/repeat_finder/src/RF_SuffixArray.h

src/plugins/repeat_finder/src/RepeatFinderTests.cpp

src/plugins/repeat_finder/src/RepeatFinderTests.h

src/plugins/repeat_finder/src/RepeatQuery.cpp

src/plugins/repeat_finder/src/RepeatQuery.h

src/plugins/repeat_finder/src/RepeatTest.cpp

src/plugins/repeat_finder/src/RepeatTest.h

src/plugins/repeat_finder/src/RepeatWorker.cpp

src/plugins/repeat_finder/src/RepeatWorker.h

src/plugins/repeat_finder/src/ui

src/plugins/repeat_finder/src/ui/FindRepeatsDialog.ui

src/plugins/repeat_finder/src/ui/FindTandemsDialog.ui

src/plugins/repeat_finder/transl/czech.ts

src/plugins/repeat_finder/transl/english.ts

src/plugins/repeat_finder/transl/russian.ts

src/plugins/smith_waterman

src/plugins/smith_waterman/smith_waterman.pri

src/plugins/smith_waterman/smith_waterman.pro

src/plugins/smith_waterman/smith_waterman.qrc

src/plugins/smith_waterman/src

src/plugins/smith_waterman/src/PairAlignSequences.cpp

src/plugins/smith_waterman/src/PairAlignSequences.h

src/plugins/smith_waterman/src/SWAlgorithmPlugin.cpp

src/plugins/smith_waterman/src/SWAlgorithmPlugin.h

src/plugins/smith_waterman/src/SWAlgorithmTask.cpp

src/plugins/smith_waterman/src/SWAlgorithmTask.h

src/plugins/smith_waterman/src/SWQuery.cpp

src/plugins/smith_waterman/src/SWQuery.h

src/plugins/smith_waterman/src/SWTaskFactory.cpp

src/plugins/smith_waterman/src/SWTaskFactory.h

src/plugins/smith_waterman/src/SWWorker.cpp

src/plugins/smith_waterman/src/SWWorker.h

src/plugins/smith_waterman/src/SmithWatermanAlgorithm.cpp

src/plugins/smith_waterman/src/SmithWatermanAlgorithm.h

src/plugins/smith_waterman/src/SmithWatermanAlgorithmCUDA.cpp

src/plugins/smith_waterman/src/SmithWatermanAlgorithmCUDA.h

src/plugins/smith_waterman/src/SmithWatermanAlgorithmOPENCL.cpp

src/plugins/smith_waterman/src/SmithWatermanAlgorithmOPENCL.h

src/plugins/smith_waterman/src/SmithWatermanAlgorithmSSE2.cpp

src/plugins/smith_waterman/src/SmithWatermanAlgorithmSSE2.h

src/plugins/smith_waterman/src/SmithWatermanTests.cpp

src/plugins/smith_waterman/src/SmithWatermanTests.h

src/plugins/smith_waterman/src/sw_cuda.cu

src/plugins/smith_waterman/src/sw_cuda_cpp.cpp

src/plugins/smith_waterman/src/sw_cuda_cpp.h

src/plugins/smith_waterman/src/sw_opencl.cl

src/plugins/smith_waterman/transl

src/plugins/smith_waterman/transl/english.ts

src/plugins/smith_waterman/transl/russian.ts

src/plugins/weight_matrix

src/plugins/weight_matrix/images

src/plugins/weight_matrix/images/weight_matrix.png

src/plugins/weight_matrix/src

src/plugins/weight_matrix/src/PWMBuildDialogController.cpp

src/plugins/weight_matrix/src/PWMBuildDialogController.h

src/plugins/weight_matrix/src/PWMJASPARDialogController.cpp

src/plugins/weight_matrix/src/PWMJASPARDialogController.h

src/plugins/weight_matrix/src/PWMSearchDialogController.cpp

src/plugins/weight_matrix/src/PWMSearchDialogController.h

src/plugins/weight_matrix/src/SetParametersDialogController.cpp

src/plugins/weight_matrix/src/SetParametersDialogController.h

src/plugins/weight_matrix/src/ViewMatrixDialogController.cpp

src/plugins/weight_matrix/src/ViewMatrixDialogController.h

src/plugins/weight_matrix/src/WMQuery.cpp

src/plugins/weight_matrix/src/WMQuery.h

src/plugins/weight_matrix/src/WeightMatrixAlgorithm.cpp

src/plugins/weight_matrix/src/WeightMatrixAlgorithm.h

src/plugins/weight_matrix/src/WeightMatrixBuildWorker.cpp

src/plugins/weight_matrix/src/WeightMatrixIO.cpp

src/plugins/weight_matrix/src/WeightMatrixIO.h

src/plugins/weight_matrix/src/WeightMatrixIOWorkers.cpp

src/plugins/weight_matrix/src/WeightMatrixIOWorkers.h

src/plugins/weight_matrix/src/WeightMatrixPlugin.cpp

src/plugins/weight_matrix/src/WeightMatrixPlugin.h

src/plugins/weight_matrix/src/WeightMatrixSearchTask.cpp

src/plugins/weight_matrix/src/WeightMatrixSearchTask.h

src/plugins/weight_matrix/src/WeightMatrixSearchWorker.cpp

src/plugins/weight_matrix/src/WeightMatrixWorkers.h

src/plugins/weight_matrix/src/ui

src/plugins/weight_matrix/src/ui/PWMBuildDialog.ui

src/plugins/weight_matrix/src/ui/PWMSearchDialog.ui

src/plugins/weight_matrix/src/ui/SearchJASPARDatabase.ui

src/plugins/weight_matrix/src/ui/SetDefaultParametersDialog.ui

src/plugins/weight_matrix/src/ui/ViewMatrixDialog.ui

src/plugins/weight_matrix/transl

src/plugins/weight_matrix/transl/czech.ts

src/plugins/weight_matrix/transl/english.ts

src/plugins/weight_matrix/transl/russian.ts

src/plugins/weight_matrix/weight_matrix.pri

src/plugins/weight_matrix/weight_matrix.pro

src/plugins/weight_matrix/weight_matrix.qrc

src/plugins/workflow_designer/images/external_cmd_tool.png

src/plugins/workflow_designer/images/external_cmd_tool_add.png

src/plugins/workflow_designer/images/filesaveas.png

src/plugins/workflow_designer/images/leftarrow.png

src/plugins/workflow_designer/images/script.png

src/plugins/workflow_designer/images/script_edit.png

src/plugins/workflow_designer/images/stopTask.png

src/plugins/workflow_designer/images/table_relationship.png

src/plugins/workflow_designer/images/toggle.png

src/plugins/workflow_designer/images/toggle_expand.png

src/plugins/workflow_designer/images/wd.png

src/plugins/workflow_designer/src/ActorCfgModel.cpp

src/plugins/workflow_designer/src/CreateScriptWorker.cpp

src/plugins/workflow_designer/src/CreateScriptWorker.h

src/plugins/workflow_designer/src/HRSceneSerializer.cpp

src/plugins/workflow_designer/src/HRSceneSerializer.h

src/plugins/workflow_designer/src/SchemaAliasesConfigurationDialogImpl.cpp

src/plugins/workflow_designer/src/SchemaAliasesConfigurationDialogImpl.h

src/plugins/workflow_designer/src/WorkflowEditorDelegates.cpp

src/plugins/workflow_designer/src/WorkflowEditorDelegates.h

src/plugins/workflow_designer/src/WorkflowSamples.cpp

src/plugins/workflow_designer/src/WorkflowSamples.h

src/plugins/workflow_designer/src/WorkflowSceneIOTasks.cpp

src/plugins/workflow_designer/src/WorkflowSceneIOTasks.h

src/plugins/workflow_designer/src/WorkflowSettingsController.cpp

src/plugins/workflow_designer/src/WorkflowSettingsController.h

src/plugins/workflow_designer/src/cmdline

src/plugins/workflow_designer/src/cmdline/WorkflowCMDLineTasks.cpp

src/plugins/workflow_designer/src/cmdline/WorkflowCMDLineTasks.h

src/plugins/workflow_designer/src/library/CDSearchWorker.cpp

src/plugins/workflow_designer/src/library/CDSearchWorker.h

src/plugins/workflow_designer/src/library/CreateExternalProcessDialog.cpp

src/plugins/workflow_designer/src/library/CreateExternalProcessDialog.h

src/plugins/workflow_designer/src/library/ExternalProcessWorker.cpp

src/plugins/workflow_designer/src/library/ExternalProcessWorker.h

src/plugins/workflow_designer/src/library/FilterAnnotationsWorker.cpp

src/plugins/workflow_designer/src/library/FilterAnnotationsWorker.h

src/plugins/workflow_designer/src/library/ImportAnnotationsWorker.cpp

src/plugins/workflow_designer/src/library/ImportAnnotationsWorker.h

src/plugins/workflow_designer/src/library/MSA2SequenceWorker.cpp

src/plugins/workflow_designer/src/library/MSA2SequenceWorker.h

src/plugins/workflow_designer/src/library/RemoteDBFetcherWorker.cpp

src/plugins/workflow_designer/src/library/RemoteDBFetcherWorker.h

src/plugins/workflow_designer/src/library/ReverseComplementWorker.cpp

src/plugins/workflow_designer/src/library/ReverseComplementWorker.h

src/plugins/workflow_designer/src/library/ScriptWorker.cpp

src/plugins/workflow_designer/src/library/ScriptWorker.h

src/plugins/workflow_designer/src/library/SequenceSplitWorker.cpp

src/plugins/workflow_designer/src/library/SequenceSplitWorker.h

src/plugins/workflow_designer/src/library/SequencesToMSAWorker.cpp

src/plugins/workflow_designer/src/library/SequencesToMSAWorker.h

src/plugins/workflow_designer/src/library/StatisticWorkers.cpp

src/plugins/workflow_designer/src/library/StatisticWorkers.h

src/plugins/workflow_designer/src/library/Text2SequenceWorker.cpp

src/plugins/workflow_designer/src/library/Text2SequenceWorker.h

src/plugins/workflow_designer/src/ui/CreateScriptBlockDialog.ui

src/plugins/workflow_designer/src/ui/ExternalProcessWorkerDialog.ui

src/plugins/workflow_designer/src/ui/SchemaAliasesConfigurationDialog.ui

src/plugins/workflow_designer/src/ui/WorkflowSettingsWidget.ui

src/plugins/workflow_designer/src/util

src/plugins/workflow_designer/src/util/SaveSchemaImageUtils.cpp

src/plugins/workflow_designer/src/util/SaveSchemaImageUtils.h

src/plugins/workflow_dump

src/plugins/workflow_dump/src

src/plugins/workflow_dump/src/WorkflowDumpPlugin.cpp

src/plugins/workflow_dump/src/WorkflowDumpPlugin.h

src/plugins/workflow_dump/workflow_dump.pri

src/plugins/workflow_dump/workflow_dump.pro

src/plugins_3rdparty/ball

src/plugins_3rdparty/ball/ball.pri

src/plugins_3rdparty/ball/ball.pro

src/plugins_3rdparty/ball/src

src/plugins_3rdparty/ball/src/BallPlugin.cpp

src/plugins_3rdparty/ball/src/BallPlugin.h

src/plugins_3rdparty/ball/src/SAS.cpp

src/plugins_3rdparty/ball/src/SAS.h

src/plugins_3rdparty/ball/src/SES.cpp

src/plugins_3rdparty/ball/src/SES.h

src/plugins_3rdparty/ball/src/include

src/plugins_3rdparty/ball/src/include/BALL

src/plugins_3rdparty/ball/src/include/BALL/COMMON

src/plugins_3rdparty/ball/src/include/BALL/COMMON/constants.h

src/plugins_3rdparty/ball/src/include/BALL/COMMON/create.h

src/plugins_3rdparty/ball/src/include/BALL/COMMON/debug.h

src/plugins_3rdparty/ball/src/include/BALL/COMMON/exception.h

src/plugins_3rdparty/ball/src/include/BALL/COMMON/global.h

src/plugins_3rdparty/ball/src/include/BALL/COMMON/hash.h

src/plugins_3rdparty/ball/src/include/BALL/COMMON/limits.h

src/plugins_3rdparty/ball/src/include/BALL/COMMON/logStream.h

src/plugins_3rdparty/ball/src/include/BALL/COMMON/logStream.iC

src/plugins_3rdparty/ball/src/include/BALL/COMMON/macros.h

src/plugins_3rdparty/ball/src/include/BALL/COMMON/rtti.h

src/plugins_3rdparty/ball/src/include/BALL/COMMON/version.h

src/plugins_3rdparty/ball/src/include/BALL/CONCEPT

src/plugins_3rdparty/ball/src/include/BALL/CONCEPT/baseFunctor.h

src/plugins_3rdparty/ball/src/include/BALL/CONCEPT/baseIterator.h

src/plugins_3rdparty/ball/src/include/BALL/CONCEPT/forwardIterator.h

src/plugins_3rdparty/ball/src/include/BALL/CONCEPT/predicate.h

src/plugins_3rdparty/ball/src/include/BALL/CONCEPT/processor.h

src/plugins_3rdparty/ball/src/include/BALL/CONCEPT/visitor.h

src/plugins_3rdparty/ball/src/include/BALL/CONFIG

src/plugins_3rdparty/ball/src/include/BALL/CONFIG/config.h

src/plugins_3rdparty/ball/src/include/BALL/DATATYPE

src/plugins_3rdparty/ball/src/include/BALL/DATATYPE/forEach.h

src/plugins_3rdparty/ball/src/include/BALL/DATATYPE/hashGrid.h

src/plugins_3rdparty/ball/src/include/BALL/DATATYPE/hashMap.h

src/plugins_3rdparty/ball/src/include/BALL/DATATYPE/hashSet.h

src/plugins_3rdparty/ball/src/include/BALL/DATATYPE/list.h

src/plugins_3rdparty/ball/src/include/BALL/DATATYPE/quadruple.h

src/plugins_3rdparty/ball/src/include/BALL/DATATYPE/string.h

src/plugins_3rdparty/ball/src/include/BALL/DATATYPE/string.iC

src/plugins_3rdparty/ball/src/include/BALL/DATATYPE/stringHashMap.h

src/plugins_3rdparty/ball/src/include/BALL/DATATYPE/triple.h

src/plugins_3rdparty/ball/src/include/BALL/MATHS

src/plugins_3rdparty/ball/src/include/BALL/MATHS/analyticalGeometry.h

src/plugins_3rdparty/ball/src/include/BALL/MATHS/angle.h

src/plugins_3rdparty/ball/src/include/BALL/MATHS/circle3.h

src/plugins_3rdparty/ball/src/include/BALL/MATHS/common.h

src/plugins_3rdparty/ball/src/include/BALL/MATHS/line3.h

src/plugins_3rdparty/ball/src/include/BALL/MATHS/matrix44.h

src/plugins_3rdparty/ball/src/include/BALL/MATHS/plane3.h

src/plugins_3rdparty/ball/src/include/BALL/MATHS/quaternion.h

src/plugins_3rdparty/ball/src/include/BALL/MATHS/simpleBox3.h

src/plugins_3rdparty/ball/src/include/BALL/MATHS/sphere3.h

src/plugins_3rdparty/ball/src/include/BALL/MATHS/surface.h

src/plugins_3rdparty/ball/src/include/BALL/MATHS/vector3.h

src/plugins_3rdparty/ball/src/include/BALL/MATHS/vector4.h

src/plugins_3rdparty/ball/src/include/BALL/STRUCTURE

src/plugins_3rdparty/ball/src/include/BALL/STRUCTURE/RSEdge.h

src/plugins_3rdparty/ball/src/include/BALL/STRUCTURE/RSFace.h

src/plugins_3rdparty/ball/src/include/BALL/STRUCTURE/RSVertex.h

src/plugins_3rdparty/ball/src/include/BALL/STRUCTURE/SASEdge.h

src/plugins_3rdparty/ball/src/include/BALL/STRUCTURE/SASFace.h

src/plugins_3rdparty/ball/src/include/BALL/STRUCTURE/SASVertex.h

src/plugins_3rdparty/ball/src/include/BALL/STRUCTURE/SESEdge.h

src/plugins_3rdparty/ball/src/include/BALL/STRUCTURE/SESFace.h

src/plugins_3rdparty/ball/src/include/BALL/STRUCTURE/SESVertex.h

src/plugins_3rdparty/ball/src/include/BALL/STRUCTURE/graphEdge.h

src/plugins_3rdparty/ball/src/include/BALL/STRUCTURE/graphFace.h

src/plugins_3rdparty/ball/src/include/BALL/STRUCTURE/graphVertex.h

src/plugins_3rdparty/ball/src/include/BALL/STRUCTURE/reducedSurface.h

src/plugins_3rdparty/ball/src/include/BALL/STRUCTURE/solventAccessibleSurface.h

src/plugins_3rdparty/ball/src/include/BALL/STRUCTURE/solventExcludedSurface.h

src/plugins_3rdparty/ball/src/include/BALL/STRUCTURE/triangle.h

src/plugins_3rdparty/ball/src/include/BALL/STRUCTURE/triangleEdge.h

src/plugins_3rdparty/ball/src/include/BALL/STRUCTURE/trianglePoint.h

src/plugins_3rdparty/ball/src/include/BALL/STRUCTURE/triangulatedSAS.h

src/plugins_3rdparty/ball/src/include/BALL/STRUCTURE/triangulatedSES.h

src/plugins_3rdparty/ball/src/include/BALL/STRUCTURE/triangulatedSurface.h

src/plugins_3rdparty/ball/src/include/BALL/common.h

src/plugins_3rdparty/ball/src/source

src/plugins_3rdparty/ball/src/source/COMMON

src/plugins_3rdparty/ball/src/source/COMMON/constants.cpp

src/plugins_3rdparty/ball/src/source/COMMON/exception.cpp

src/plugins_3rdparty/ball/src/source/COMMON/hash.cpp

src/plugins_3rdparty/ball/src/source/COMMON/logStream.cpp

src/plugins_3rdparty/ball/src/source/COMMON/rtti.cpp

src/plugins_3rdparty/ball/src/source/COMMON/version.cpp

src/plugins_3rdparty/ball/src/source/CONCEPT

src/plugins_3rdparty/ball/src/source/CONCEPT/predicate.cpp

src/plugins_3rdparty/ball/src/source/CONCEPT/processor.cpp

src/plugins_3rdparty/ball/src/source/CONCEPT/visitor.cpp

src/plugins_3rdparty/ball/src/source/DATATYPE

src/plugins_3rdparty/ball/src/source/DATATYPE/hashGrid.cpp

src/plugins_3rdparty/ball/src/source/DATATYPE/string.cpp

src/plugins_3rdparty/ball/src/source/MATHS

src/plugins_3rdparty/ball/src/source/MATHS/analyticalGeometry.cpp

src/plugins_3rdparty/ball/src/source/MATHS/angle.cpp

src/plugins_3rdparty/ball/src/source/MATHS/circle3.cpp

src/plugins_3rdparty/ball/src/source/MATHS/common.cpp

src/plugins_3rdparty/ball/src/source/MATHS/line3.cpp

src/plugins_3rdparty/ball/src/source/MATHS/matrix44.cpp

src/plugins_3rdparty/ball/src/source/MATHS/plane3.cpp

src/plugins_3rdparty/ball/src/source/MATHS/quaternion.cpp

src/plugins_3rdparty/ball/src/source/MATHS/simpleBox3.cpp

src/plugins_3rdparty/ball/src/source/MATHS/sphere3.cpp

src/plugins_3rdparty/ball/src/source/MATHS/surface.cpp

src/plugins_3rdparty/ball/src/source/MATHS/vector3.cpp

src/plugins_3rdparty/ball/src/source/MATHS/vector4.cpp

src/plugins_3rdparty/ball/src/source/STRUCTURE

src/plugins_3rdparty/ball/src/source/STRUCTURE/RSEdge.cpp

src/plugins_3rdparty/ball/src/source/STRUCTURE/RSFace.cpp

src/plugins_3rdparty/ball/src/source/STRUCTURE/RSVertex.cpp

src/plugins_3rdparty/ball/src/source/STRUCTURE/SASEdge.cpp

src/plugins_3rdparty/ball/src/source/STRUCTURE/SASFace.cpp

src/plugins_3rdparty/ball/src/source/STRUCTURE/SASVertex.cpp

src/plugins_3rdparty/ball/src/source/STRUCTURE/SESEdge.cpp

src/plugins_3rdparty/ball/src/source/STRUCTURE/SESFace.cpp

src/plugins_3rdparty/ball/src/source/STRUCTURE/SESVertex.cpp

src/plugins_3rdparty/ball/src/source/STRUCTURE/graphEdge.cpp

src/plugins_3rdparty/ball/src/source/STRUCTURE/graphFace.cpp

src/plugins_3rdparty/ball/src/source/STRUCTURE/graphVertex.cpp

src/plugins_3rdparty/ball/src/source/STRUCTURE/reducedSurface.cpp

src/plugins_3rdparty/ball/src/source/STRUCTURE/solventAccessibleSurface.cpp

src/plugins_3rdparty/ball/src/source/STRUCTURE/solventExcludedSurface.cpp

src/plugins_3rdparty/ball/src/source/STRUCTURE/triangle.cpp

src/plugins_3rdparty/ball/src/source/STRUCTURE/triangleEdge.cpp

src/plugins_3rdparty/ball/src/source/STRUCTURE/trianglePoint.cpp

src/plugins_3rdparty/ball/src/source/STRUCTURE/triangulatedSAS.cpp

src/plugins_3rdparty/ball/src/source/STRUCTURE/triangulatedSES.cpp

src/plugins_3rdparty/ball/src/source/STRUCTURE/triangulatedSurface.cpp

src/plugins_3rdparty/ball/transl

src/plugins_3rdparty/ball/transl/czech.ts

src/plugins_3rdparty/ball/transl/english.ts

src/plugins_3rdparty/ball/transl/russian.ts

src/plugins_3rdparty/bowtie

src/plugins_3rdparty/bowtie/bowtie.pri

src/plugins_3rdparty/bowtie/bowtie.pro

src/plugins_3rdparty/bowtie/src

src/plugins_3rdparty/bowtie/src/BowtieAdapter.cpp

src/plugins_3rdparty/bowtie/src/BowtieAdapter.h

src/plugins_3rdparty/bowtie/src/BowtieConstants.h

src/plugins_3rdparty/bowtie/src/BowtieContext.cpp

src/plugins_3rdparty/bowtie/src/BowtieContext.h

src/plugins_3rdparty/bowtie/src/BowtieIOAdapter.cpp

src/plugins_3rdparty/bowtie/src/BowtieIOAdapter.h

src/plugins_3rdparty/bowtie/src/BowtiePlugin.cpp

src/plugins_3rdparty/bowtie/src/BowtiePlugin.h

src/plugins_3rdparty/bowtie/src/BowtieReadsIOUtils.h

src/plugins_3rdparty/bowtie/src/BowtieSettingsWidget.cpp

src/plugins_3rdparty/bowtie/src/BowtieSettingsWidget.h

src/plugins_3rdparty/bowtie/src/BowtieTask.cpp

src/plugins_3rdparty/bowtie/src/BowtieTask.h

src/plugins_3rdparty/bowtie/src/BowtieWorker.cpp

src/plugins_3rdparty/bowtie/src/BowtieWorker.h

src/plugins_3rdparty/bowtie/src/bowtie

src/plugins_3rdparty/bowtie/src/bowtie/COPYING

src/plugins_3rdparty/bowtie/src/bowtie/SeqAn-1.1

src/plugins_3rdparty/bowtie/src/bowtie/SeqAn-1.1/README.txt

src/plugins_3rdparty/bowtie/src/bowtie/SeqAn-1.1/platform_linux_gcc.h

src/plugins_3rdparty/bowtie/src/bowtie/SeqAn-1.1/platform_windows_mingw.h

src/plugins_3rdparty/bowtie/src/bowtie/SeqAn-1.1/platform_windows_vs.h

src/plugins_3rdparty/bowtie/src/bowtie/SeqAn-1.1/seqan

src/plugins_3rdparty/bowtie/src/bowtie/SeqAn-1.1/seqan/basic

src/plugins_3rdparty/bowtie/src/bowtie/SeqAn-1.1/seqan/basic.h

src/plugins_3rdparty/bowtie/src/bowtie/SeqAn-1.1/seqan/basic/basic_aggregates.h

src/plugins_3rdparty/bowtie/src/bowtie/SeqAn-1.1/seqan/basic/basic_allocator_interface.h

src/plugins_3rdparty/bowtie/src/bowtie/SeqAn-1.1/seqan/basic/basic_allocator_multipool.h

src/plugins_3rdparty/bowtie/src/bowtie/SeqAn-1.1/seqan/basic/basic_allocator_simple.h

src/plugins_3rdparty/bowtie/src/bowtie/SeqAn-1.1/seqan/basic/basic_allocator_singlepool.h

src/plugins_3rdparty/bowtie/src/bowtie/SeqAn-1.1/seqan/basic/basic_allocator_to_std.h

src/plugins_3rdparty/bowtie/src/bowtie/SeqAn-1.1/seqan/basic/basic_alphabet_interface.h

src/plugins_3rdparty/bowtie/src/bowtie/SeqAn-1.1/seqan/basic/basic_alphabet_interface2.h

src/plugins_3rdparty/bowtie/src/bowtie/SeqAn-1.1/seqan/basic/basic_alphabet_simple.h

src/plugins_3rdparty/bowtie/src/bowtie/SeqAn-1.1/seqan/basic/basic_alphabet_simple_tabs.h

src/plugins_3rdparty/bowtie/src/bowtie/SeqAn-1.1/seqan/basic/basic_alphabet_trait_basic.h

src/plugins_3rdparty/bowtie/src/bowtie/SeqAn-1.1/seqan/basic/basic_compare.h

src/plugins_3rdparty/bowtie/src/bowtie/SeqAn-1.1/seqan/basic/basic_converter.h

src/plugins_3rdparty/bowtie/src/bowtie/SeqAn-1.1/seqan/basic/basic_counted_ptr.h

src/plugins_3rdparty/bowtie/src/bowtie/SeqAn-1.1/seqan/basic/basic_debug.h

src/plugins_3rdparty/bowtie/src/bowtie/SeqAn-1.1/seqan/basic/basic_definition.h

src/plugins_3rdparty/bowtie/src/bowtie/SeqAn-1.1/seqan/basic/basic_forwards.h

src/plugins_3rdparty/bowtie/src/bowtie/SeqAn-1.1/seqan/basic/basic_generated_forwards.h

src/plugins_3rdparty/bowtie/src/bowtie/SeqAn-1.1/seqan/basic/basic_holder.h

src/plugins_3rdparty/bowtie/src/bowtie/SeqAn-1.1/seqan/basic/basic_host.h

src/plugins_3rdparty/bowtie/src/bowtie/SeqAn-1.1/seqan/basic/basic_iterator.h

src/plugins_3rdparty/bowtie/src/bowtie/SeqAn-1.1/seqan/basic/basic_iterator_adapt_std.h

src/plugins_3rdparty/bowtie/src/bowtie/SeqAn-1.1/seqan/basic/basic_iterator_adaptor.h

src/plugins_3rdparty/bowtie/src/bowtie/SeqAn-1.1/seqan/basic/basic_iterator_base.h

src/plugins_3rdparty/bowtie/src/bowtie/SeqAn-1.1/seqan/basic/basic_iterator_position.h

src/plugins_3rdparty/bowtie/src/bowtie/SeqAn-1.1/seqan/basic/basic_iterator_simple.h

src/plugins_3rdparty/bowtie/src/bowtie/SeqAn-1.1/seqan/basic/basic_metaprogramming.h

src/plugins_3rdparty/bowtie/src/bowtie/SeqAn-1.1/seqan/basic/basic_operator.h

src/plugins_3rdparty/bowtie/src/bowtie/SeqAn-1.1/seqan/basic/basic_pointer.h

src/plugins_3rdparty/bowtie/src/bowtie/SeqAn-1.1/seqan/basic/basic_profile.h

src/plugins_3rdparty/bowtie/src/bowtie/SeqAn-1.1/seqan/basic/basic_proxy.h

src/plugins_3rdparty/bowtie/src/bowtie/SeqAn-1.1/seqan/basic/basic_tag.h

src/plugins_3rdparty/bowtie/src/bowtie/SeqAn-1.1/seqan/basic/basic_transport.h

src/plugins_3rdparty/bowtie/src/bowtie/SeqAn-1.1/seqan/basic/basic_type.h

src/plugins_3rdparty/bowtie/src/bowtie/SeqAn-1.1/seqan/basic/basic_volatile_ptr.h

src/plugins_3rdparty/bowtie/src/bowtie/SeqAn-1.1/seqan/file

src/plugins_3rdparty/bowtie/src/bowtie/SeqAn-1.1/seqan/file.h

src/plugins_3rdparty/bowtie/src/bowtie/SeqAn-1.1/seqan/file/chunk_collector.h

src/plugins_3rdparty/bowtie/src/bowtie/SeqAn-1.1/seqan/file/cstream.h

src/plugins_3rdparty/bowtie/src/bowtie/SeqAn-1.1/seqan/file/file_array.h

src/plugins_3rdparty/bowtie/src/bowtie/SeqAn-1.1/seqan/file/file_base.h

src/plugins_3rdparty/bowtie/src/bowtie/SeqAn-1.1/seqan/file/file_format.h

src/plugins_3rdparty/bowtie/src/bowtie/SeqAn-1.1/seqan/file/file_format_cgviz.h

src/plugins_3rdparty/bowtie/src/bowtie/SeqAn-1.1/seqan/file/file_format_fasta.h

src/plugins_3rdparty/bowtie/src/bowtie/SeqAn-1.1/seqan/file/file_format_fasta_align.h

src/plugins_3rdparty/bowtie/src/bowtie/SeqAn-1.1/seqan/file/file_format_guess.h

src/plugins_3rdparty/bowtie/src/bowtie/SeqAn-1.1/seqan/file/file_format_raw.h

src/plugins_3rdparty/bowtie/src/bowtie/SeqAn-1.1/seqan/file/file_forwards.h

src/plugins_3rdparty/bowtie/src/bowtie/SeqAn-1.1/seqan/file/file_generated_forwards.h

src/plugins_3rdparty/bowtie/src/bowtie/SeqAn-1.1/seqan/file/meta.h

src/plugins_3rdparty/bowtie/src/bowtie/SeqAn-1.1/seqan/file/stream.h

src/plugins_3rdparty/bowtie/src/bowtie/SeqAn-1.1/seqan/file/stream_algorithms.h

src/plugins_3rdparty/bowtie/src/bowtie/SeqAn-1.1/seqan/find

src/plugins_3rdparty/bowtie/src/bowtie/SeqAn-1.1/seqan/find.h

src/plugins_3rdparty/bowtie/src/bowtie/SeqAn-1.1/seqan/find/find_base.h

src/plugins_3rdparty/bowtie/src/bowtie/SeqAn-1.1/seqan/find/find_generated_forwards.h

src/plugins_3rdparty/bowtie/src/bowtie/SeqAn-1.1/seqan/find/find_horspool.h

src/plugins_3rdparty/bowtie/src/bowtie/SeqAn-1.1/seqan/find/find_multi.h

src/plugins_3rdparty/bowtie/src/bowtie/SeqAn-1.1/seqan/find/find_multiple_shiftand.h

src/plugins_3rdparty/bowtie/src/bowtie/SeqAn-1.1/seqan/find/find_score.h

src/plugins_3rdparty/bowtie/src/bowtie/SeqAn-1.1/seqan/find/find_set_horspool.h

src/plugins_3rdparty/bowtie/src/bowtie/SeqAn-1.1/seqan/index

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src/plugins_3rdparty/bowtie/src/bowtie/SeqAn-1.1/seqan/index/index_find.h

src/plugins_3rdparty/bowtie/src/bowtie/SeqAn-1.1/seqan/index/index_generated_forwards.h

src/plugins_3rdparty/bowtie/src/bowtie/SeqAn-1.1/seqan/index/index_manual_forwards.h

src/plugins_3rdparty/bowtie/src/bowtie/SeqAn-1.1/seqan/index/index_qgram_find.h

src/plugins_3rdparty/bowtie/src/bowtie/SeqAn-1.1/seqan/index/index_sa_lss.h

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src/plugins_3rdparty/bowtie/src/bowtie/SeqAn-1.1/seqan/index/shape_gapped.h

src/plugins_3rdparty/bowtie/src/bowtie/SeqAn-1.1/seqan/index/shape_predefined.h

src/plugins_3rdparty/bowtie/src/bowtie/SeqAn-1.1/seqan/platform.h

src/plugins_3rdparty/bowtie/src/bowtie/SeqAn-1.1/seqan/sequence

src/plugins_3rdparty/bowtie/src/bowtie/SeqAn-1.1/seqan/sequence.h

src/plugins_3rdparty/bowtie/src/bowtie/SeqAn-1.1/seqan/sequence/lexical.h

src/plugins_3rdparty/bowtie/src/bowtie/SeqAn-1.1/seqan/sequence/segment_base.h

src/plugins_3rdparty/bowtie/src/bowtie/SeqAn-1.1/seqan/sequence/segment_infix.h

src/plugins_3rdparty/bowtie/src/bowtie/SeqAn-1.1/seqan/sequence/segment_prefix.h

src/plugins_3rdparty/bowtie/src/bowtie/SeqAn-1.1/seqan/sequence/segment_suffix.h

src/plugins_3rdparty/bowtie/src/bowtie/SeqAn-1.1/seqan/sequence/sequence_forwards.h

src/plugins_3rdparty/bowtie/src/bowtie/SeqAn-1.1/seqan/sequence/sequence_generated_forwards.h

src/plugins_3rdparty/bowtie/src/bowtie/SeqAn-1.1/seqan/sequence/sequence_interface.h

src/plugins_3rdparty/bowtie/src/bowtie/SeqAn-1.1/seqan/sequence/sequence_multiple.h

src/plugins_3rdparty/bowtie/src/bowtie/SeqAn-1.1/seqan/sequence/sequence_shortcuts.h

src/plugins_3rdparty/bowtie/src/bowtie/SeqAn-1.1/seqan/sequence/std_string.h

src/plugins_3rdparty/bowtie/src/bowtie/SeqAn-1.1/seqan/sequence/string_alloc.h

src/plugins_3rdparty/bowtie/src/bowtie/SeqAn-1.1/seqan/sequence/string_array.h

src/plugins_3rdparty/bowtie/src/bowtie/SeqAn-1.1/seqan/sequence/string_base.h

src/plugins_3rdparty/bowtie/src/bowtie/SeqAn-1.1/seqan/sequence/string_cstyle.h

src/plugins_3rdparty/bowtie/src/bowtie/SeqAn-1.1/seqan/sequence/string_packed.h

src/plugins_3rdparty/bowtie/src/bowtie/SeqAn-1.1/seqan/sequence/string_pointer.h

src/plugins_3rdparty/bowtie/src/bowtie/SeqAn-1.1/seqan/sequence/string_stack.h

src/plugins_3rdparty/bowtie/src/bowtie/SeqAn-1.1/seqan/sequence/string_value_expand.h

src/plugins_3rdparty/bowtie/src/bowtie/aligner.h

src/plugins_3rdparty/bowtie/src/bowtie/aligner_0mm.h

src/plugins_3rdparty/bowtie/src/bowtie/aligner_1mm.h

src/plugins_3rdparty/bowtie/src/bowtie/aligner_23mm.h

src/plugins_3rdparty/bowtie/src/bowtie/aligner_metrics.h

src/plugins_3rdparty/bowtie/src/bowtie/aligner_seed_mm.h

src/plugins_3rdparty/bowtie/src/bowtie/alphabet.cpp

src/plugins_3rdparty/bowtie/src/bowtie/alphabet.h

src/plugins_3rdparty/bowtie/src/bowtie/annot.cpp

src/plugins_3rdparty/bowtie/src/bowtie/annot.h

src/plugins_3rdparty/bowtie/src/bowtie/assert_helpers.h

src/plugins_3rdparty/bowtie/src/bowtie/auto_array.h

src/plugins_3rdparty/bowtie/src/bowtie/binary_sa_search.h

src/plugins_3rdparty/bowtie/src/bowtie/bitpack.h

src/plugins_3rdparty/bowtie/src/bowtie/bitset.h

src/plugins_3rdparty/bowtie/src/bowtie/blockwise_sa.cpp

src/plugins_3rdparty/bowtie/src/bowtie/blockwise_sa.h

src/plugins_3rdparty/bowtie/src/bowtie/bowtie_build_main.cpp

src/plugins_3rdparty/bowtie/src/bowtie/bowtie_inspect.cpp

src/plugins_3rdparty/bowtie/src/bowtie/bowtie_main.cpp

src/plugins_3rdparty/bowtie/src/bowtie/ccnt_lut.cpp

src/plugins_3rdparty/bowtie/src/bowtie/chaincat.cpp

src/plugins_3rdparty/bowtie/src/bowtie/color.cpp

src/plugins_3rdparty/bowtie/src/bowtie/color.h

src/plugins_3rdparty/bowtie/src/bowtie/color_dec.cpp

src/plugins_3rdparty/bowtie/src/bowtie/color_dec.h

src/plugins_3rdparty/bowtie/src/bowtie/diff_sample.h

src/plugins_3rdparty/bowtie/src/bowtie/ebwt.cpp

src/plugins_3rdparty/bowtie/src/bowtie/ebwt.h

src/plugins_3rdparty/bowtie/src/bowtie/ebwt_build.cpp

src/plugins_3rdparty/bowtie/src/bowtie/ebwt_search.cpp

src/plugins_3rdparty/bowtie/src/bowtie/ebwt_search_backtrack.h

src/plugins_3rdparty/bowtie/src/bowtie/ebwt_search_util.cpp

src/plugins_3rdparty/bowtie/src/bowtie/ebwt_search_util.h

src/plugins_3rdparty/bowtie/src/bowtie/edit.cpp

src/plugins_3rdparty/bowtie/src/bowtie/edit.h

src/plugins_3rdparty/bowtie/src/bowtie/endian_swap.h

src/plugins_3rdparty/bowtie/src/bowtie/filebuf.h

src/plugins_3rdparty/bowtie/src/bowtie/formats.h

src/plugins_3rdparty/bowtie/src/bowtie/hit.cpp

src/plugins_3rdparty/bowtie/src/bowtie/hit.h

src/plugins_3rdparty/bowtie/src/bowtie/hit_set.cpp

src/plugins_3rdparty/bowtie/src/bowtie/hit_set.h

src/plugins_3rdparty/bowtie/src/bowtie/log.cpp

src/plugins_3rdparty/bowtie/src/bowtie/log.h

src/plugins_3rdparty/bowtie/src/bowtie/mm.h

src/plugins_3rdparty/bowtie/src/bowtie/multikey_qsort.h

src/plugins_3rdparty/bowtie/src/bowtie/pat.cpp

src/plugins_3rdparty/bowtie/src/bowtie/pat.h

src/plugins_3rdparty/bowtie/src/bowtie/pool.h

src/plugins_3rdparty/bowtie/src/bowtie/qual.cpp

src/plugins_3rdparty/bowtie/src/bowtie/qual.h

src/plugins_3rdparty/bowtie/src/bowtie/random_source.h

src/plugins_3rdparty/bowtie/src/bowtie/random_test.cpp

src/plugins_3rdparty/bowtie/src/bowtie/range.h

src/plugins_3rdparty/bowtie/src/bowtie/range_cache.h

src/plugins_3rdparty/bowtie/src/bowtie/range_chaser.h

src/plugins_3rdparty/bowtie/src/bowtie/range_source.h

src/plugins_3rdparty/bowtie/src/bowtie/ref_aligner.cpp

src/plugins_3rdparty/bowtie/src/bowtie/ref_aligner.h

src/plugins_3rdparty/bowtie/src/bowtie/ref_read.cpp

src/plugins_3rdparty/bowtie/src/bowtie/ref_read.h

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src/plugins_3rdparty/kalign/src/kalign2/COPYING

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src/plugins_3rdparty/kalign/src/kalign2/kalign2_advanced_gaps.c

src/plugins_3rdparty/kalign/src/kalign2/kalign2_advanced_gaps.h

src/plugins_3rdparty/kalign/src/kalign2/kalign2_alignment_types.c

src/plugins_3rdparty/kalign/src/kalign2/kalign2_conservation.c

src/plugins_3rdparty/kalign/src/kalign2/kalign2_context.c

src/plugins_3rdparty/kalign/src/kalign2/kalign2_context.h

src/plugins_3rdparty/kalign/src/kalign2/kalign2_distance_calculation.c

src/plugins_3rdparty/kalign/src/kalign2/kalign2_dp.c

src/plugins_3rdparty/kalign/src/kalign2/kalign2_feature.c

src/plugins_3rdparty/kalign/src/kalign2/kalign2_feature.h

src/plugins_3rdparty/kalign/src/kalign2/kalign2_hirschberg.c

src/plugins_3rdparty/kalign/src/kalign2/kalign2_hirschberg.h

src/plugins_3rdparty/kalign/src/kalign2/kalign2_hirschberg_dna.c

src/plugins_3rdparty/kalign/src/kalign2/kalign2_hirschberg_dna.h

src/plugins_3rdparty/kalign/src/kalign2/kalign2_hirschberg_large.c

src/plugins_3rdparty/kalign/src/kalign2/kalign2_hirschberg_large.h

src/plugins_3rdparty/kalign/src/kalign2/kalign2_inferface.c

src/plugins_3rdparty/kalign/src/kalign2/kalign2_input.c

src/plugins_3rdparty/kalign/src/kalign2/kalign2_input.h

src/plugins_3rdparty/kalign/src/kalign2/kalign2_main.c

src/plugins_3rdparty/kalign/src/kalign2/kalign2_mem.c

src/plugins_3rdparty/kalign/src/kalign2/kalign2_misc.c

src/plugins_3rdparty/kalign/src/kalign2/kalign2_output.c

src/plugins_3rdparty/kalign/src/kalign2/kalign2_output.h

src/plugins_3rdparty/kalign/src/kalign2/kalign2_profile.c

src/plugins_3rdparty/kalign/src/kalign2/kalign2_profile_alignment.c

src/plugins_3rdparty/kalign/src/kalign2/kalign2_profile_alignment.h

src/plugins_3rdparty/kalign/src/kalign2/kalign2_simple_gaps.c

src/plugins_3rdparty/kalign/src/kalign2/kalign2_string_matching.c

src/plugins_3rdparty/kalign/src/kalign2/kalign2_tree.c

src/plugins_3rdparty/kalign/src/kalign2/kalign2_upgma.c

src/plugins_3rdparty/kalign/src/kalign_tests

src/plugins_3rdparty/kalign/src/kalign_tests/KalignTests.cpp

src/plugins_3rdparty/kalign/src/kalign_tests/KalignTests.h

src/plugins_3rdparty/kalign/src/ui

src/plugins_3rdparty/kalign/src/ui/KalignDialog.ui

src/plugins_3rdparty/kalign/transl

src/plugins_3rdparty/kalign/transl/english.ts

src/plugins_3rdparty/kalign/transl/russian.ts

src/plugins_3rdparty/phylip

src/plugins_3rdparty/phylip/phylip.pri

src/plugins_3rdparty/phylip/phylip.pro

src/plugins_3rdparty/phylip/src

src/plugins_3rdparty/phylip/src/DistMatrixModelWidget.cpp

src/plugins_3rdparty/phylip/src/DistMatrixModelWidget.h

src/plugins_3rdparty/phylip/src/DistanceMatrix.cpp

src/plugins_3rdparty/phylip/src/DistanceMatrix.h

src/plugins_3rdparty/phylip/src/NeighborJoinAdapter.cpp

src/plugins_3rdparty/phylip/src/NeighborJoinAdapter.h

src/plugins_3rdparty/phylip/src/PhylipPlugin.cpp

src/plugins_3rdparty/phylip/src/PhylipPlugin.h

src/plugins_3rdparty/phylip/src/PhylipPluginTests.cpp

src/plugins_3rdparty/phylip/src/PhylipPluginTests.h

src/plugins_3rdparty/phylip/src/SeqBootAdapter.cpp

src/plugins_3rdparty/phylip/src/SeqBootAdapter.h

src/plugins_3rdparty/phylip/src/SeqBootModelWidget.cpp

src/plugins_3rdparty/phylip/src/SeqBootModelWidget.h

src/plugins_3rdparty/phylip/src/cons.cpp

src/plugins_3rdparty/phylip/src/cons.h

src/plugins_3rdparty/phylip/src/dist.cpp

src/plugins_3rdparty/phylip/src/dist.h

src/plugins_3rdparty/phylip/src/dnadist.cpp

src/plugins_3rdparty/phylip/src/dnadist.h

src/plugins_3rdparty/phylip/src/neighbor.cpp

src/plugins_3rdparty/phylip/src/neighbor.h

src/plugins_3rdparty/phylip/src/phylip.cpp

src/plugins_3rdparty/phylip/src/phylip.h

src/plugins_3rdparty/phylip/src/protdist.cpp

src/plugins_3rdparty/phylip/src/protdist.h

src/plugins_3rdparty/phylip/src/seq.cpp

src/plugins_3rdparty/phylip/src/seq.h

src/plugins_3rdparty/phylip/src/seqboot.cpp

src/plugins_3rdparty/phylip/src/seqboot.h

src/plugins_3rdparty/phylip/src/ui

src/plugins_3rdparty/phylip/src/ui/DistMatrixModel.ui

src/plugins_3rdparty/phylip/src/ui/SeqBootModel.ui

src/plugins_3rdparty/phylip/transl

src/plugins_3rdparty/phylip/transl/english.ts

src/plugins_3rdparty/phylip/transl/russian.ts

src/plugins_3rdparty/primer3

src/plugins_3rdparty/primer3/images

src/plugins_3rdparty/primer3/images/primer3.png

src/plugins_3rdparty/primer3/primer3.pri

src/plugins_3rdparty/primer3/primer3.pro

src/plugins_3rdparty/primer3/primer3.qrc

src/plugins_3rdparty/primer3/src

src/plugins_3rdparty/primer3/src/Primer3Dialog.cpp

src/plugins_3rdparty/primer3/src/Primer3Dialog.h

src/plugins_3rdparty/primer3/src/Primer3Plugin.cpp

src/plugins_3rdparty/primer3/src/Primer3Plugin.h

src/plugins_3rdparty/primer3/src/Primer3Query.cpp

src/plugins_3rdparty/primer3/src/Primer3Query.h

src/plugins_3rdparty/primer3/src/Primer3Task.cpp

src/plugins_3rdparty/primer3/src/Primer3Task.h

src/plugins_3rdparty/primer3/src/Primer3TaskSettings.cpp

src/plugins_3rdparty/primer3/src/Primer3TaskSettings.h

src/plugins_3rdparty/primer3/src/Primer3Tests.cpp

src/plugins_3rdparty/primer3/src/Primer3Tests.h

src/plugins_3rdparty/primer3/src/primer3_core

src/plugins_3rdparty/primer3/src/primer3_core/boulder_input.c

src/plugins_3rdparty/primer3/src/primer3_core/boulder_input.h

src/plugins_3rdparty/primer3/src/primer3_core/dpal.c

src/plugins_3rdparty/primer3/src/primer3_core/dpal.h

src/plugins_3rdparty/primer3/src/primer3_core/oligotm.c

src/plugins_3rdparty/primer3/src/primer3_core/oligotm.h

src/plugins_3rdparty/primer3/src/primer3_core/primer3.c

src/plugins_3rdparty/primer3/src/primer3_core/primer3.h

src/plugins_3rdparty/primer3/src/primer3_core/primer3_main.c

src/plugins_3rdparty/primer3/src/primer3_core/primer3_main.h

src/plugins_3rdparty/primer3/src/ui

src/plugins_3rdparty/primer3/src/ui/Primer3Dialog.ui

src/plugins_3rdparty/primer3/transl

src/plugins_3rdparty/primer3/transl/czech.ts

src/plugins_3rdparty/primer3/transl/english.ts

src/plugins_3rdparty/primer3/transl/russian.ts

src/plugins_3rdparty/psipred

src/plugins_3rdparty/psipred/datafiles

src/plugins_3rdparty/psipred/datafiles/weights_p2.dat

src/plugins_3rdparty/psipred/datafiles/weights_s.dat

src/plugins_3rdparty/psipred/datafiles/weights_s.dat2

src/plugins_3rdparty/psipred/datafiles/weights_s.dat3

src/plugins_3rdparty/psipred/psipred.pri

src/plugins_3rdparty/psipred/psipred.pro

src/plugins_3rdparty/psipred/psipred.qrc

src/plugins_3rdparty/psipred/src

src/plugins_3rdparty/psipred/src/LICENSE

src/plugins_3rdparty/psipred/src/PsipredAlgTask.cpp

src/plugins_3rdparty/psipred/src/PsipredAlgTask.h

src/plugins_3rdparty/psipred/src/PsipredPlugin.cpp

src/plugins_3rdparty/psipred/src/PsipredPlugin.h

src/plugins_3rdparty/psipred/src/seq2mtx.cpp

src/plugins_3rdparty/psipred/src/ssdefs.h

src/plugins_3rdparty/psipred/src/sspred_avpred.cpp

src/plugins_3rdparty/psipred/src/sspred_avpred.h

src/plugins_3rdparty/psipred/src/sspred_hmulti.cpp

src/plugins_3rdparty/psipred/src/sspred_hmulti.h

src/plugins_3rdparty/psipred/src/sspred_net.h

src/plugins_3rdparty/psipred/src/sspred_net2.h

src/plugins_3rdparty/psipred/src/sspred_utils.cpp

src/plugins_3rdparty/psipred/src/sspred_utils.h

src/plugins_3rdparty/psipred/transl

src/plugins_3rdparty/psipred/transl/czech.ts

src/plugins_3rdparty/psipred/transl/english.ts

src/plugins_3rdparty/psipred/transl/russian.ts

src/plugins_3rdparty/ptools

src/plugins_3rdparty/ptools/ptools.pri

src/plugins_3rdparty/ptools/ptools.pro

src/plugins_3rdparty/ptools/src

src/plugins_3rdparty/ptools/src/PToolsAligner.cpp

src/plugins_3rdparty/ptools/src/PToolsAligner.h

src/plugins_3rdparty/ptools/src/PToolsPlugin.cpp

src/plugins_3rdparty/ptools/src/PToolsPlugin.h

src/plugins_3rdparty/ptools/src/PToolsTests.cpp

src/plugins_3rdparty/ptools/src/PToolsTests.h

src/plugins_3rdparty/ptools/src/ptools

src/plugins_3rdparty/ptools/src/ptools/atom.cpp

src/plugins_3rdparty/ptools/src/ptools/atom.h

src/plugins_3rdparty/ptools/src/ptools/atomselection.cpp

src/plugins_3rdparty/ptools/src/ptools/atomselection.h

src/plugins_3rdparty/ptools/src/ptools/basetypes.cpp

src/plugins_3rdparty/ptools/src/ptools/basetypes.h

src/plugins_3rdparty/ptools/src/ptools/coord3d.cpp

src/plugins_3rdparty/ptools/src/ptools/coord3d.h

src/plugins_3rdparty/ptools/src/ptools/coordsarray.cpp

src/plugins_3rdparty/ptools/src/ptools/coordsarray.h

src/plugins_3rdparty/ptools/src/ptools/derivify.h

src/plugins_3rdparty/ptools/src/ptools/geometry.cpp

src/plugins_3rdparty/ptools/src/ptools/geometry.h

src/plugins_3rdparty/ptools/src/ptools/pdbio.cpp

src/plugins_3rdparty/ptools/src/ptools/pdbio.h

src/plugins_3rdparty/ptools/src/ptools/rigidbody.cpp

src/plugins_3rdparty/ptools/src/ptools/rigidbody.h

src/plugins_3rdparty/ptools/src/ptools/rmsd.cpp

src/plugins_3rdparty/ptools/src/ptools/rmsd.h

src/plugins_3rdparty/ptools/src/ptools/screw.h

src/plugins_3rdparty/ptools/src/ptools/superpose.cpp

src/plugins_3rdparty/ptools/src/ptools/superpose.h

src/plugins_3rdparty/sitecon/src/DIPropertiesSitecon.cpp

src/plugins_3rdparty/sitecon/src/DIPropertiesSitecon.h

src/plugins_3rdparty/sitecon/src/SiteconQuery.cpp

src/plugins_3rdparty/sitecon/src/SiteconQuery.h

src/plugins_3rdparty/sitecon/transl/czech.ts

src/plugins_3rdparty/umuscle/src/MuscleConstants.h

src/plugins_3rdparty/umuscle/src/MuscleParallel.cpp

src/plugins_3rdparty/umuscle/src/MuscleParallel.h

src/plugins_3rdparty/umuscle/src/MuscleUtils.cpp

src/plugins_3rdparty/umuscle/src/MuscleUtils.h

src/plugins_3rdparty/umuscle/src/MuscleWorkPool.cpp

src/plugins_3rdparty/umuscle/src/MuscleWorkPool.h

src/plugins_3rdparty/umuscle/src/refinehorizP.cpp

src/plugins_3rdparty/umuscle/src/refinevertP.cpp

src/plugins_3rdparty/umuscle/transl/czech.ts

src/ugene_lib_common.pri

src/ugene_plugin_common.pri

src/ugene_plugin_descriptor.pri

src/ugene_version.pri

src/ugenecl

src/ugenecl/images

src/ugenecl/images/ext.ico

src/ugenecl/images/ugene.ico

src/ugenecl/images/ugenecl_mac.icns

src/ugenecl/src

src/ugenecl/src/DumpHelpTask.cpp

src/ugenecl/src/DumpHelpTask.h

src/ugenecl/src/DumpLicenseTask.cpp

src/ugenecl/src/DumpLicenseTask.h

src/ugenecl/src/DumpVersionTask.cpp

src/ugenecl/src/DumpVersionTask.h

src/ugenecl/src/ForeverTask.cpp

src/ugenecl/src/ForeverTask.h

src/ugenecl/src/LogDriver.cpp

src/ugenecl/src/LogDriver.h

src/ugenecl/src/Main.cpp

src/ugenecl/src/ShutdownTask.cpp

src/ugenecl/src/ShutdownTask.h

src/ugenecl/src/TaskStatusBar.cpp

src/ugenecl/src/TaskStatusBar.h

src/ugenecl/src/TestStarter.cpp

src/ugenecl/src/TestStarter.h

src/ugenecl/ugenecl.pri

src/ugenecl/ugenecl.pro

src/ugenecl/ugenecl.rc

src/ugenem

src/ugenem/images

src/ugenem/images/crash_icon.png

src/ugenem/src

src/ugenem/src/SendReportDialog.cpp

src/ugenem/src/SendReportDialog.h

src/ugenem/src/main.cpp

src/ugenem/src/ui

src/ugenem/src/ui/SendReportDialog.ui

src/ugenem/ugenem.pro

src/ugenem/ugenem.qrc

src/ugenem/ugenem.rc

src/ugeneui

src/ugeneui/images

src/ugeneui/images/about.png

src/ugeneui/images/add_existing_document.png

src/ugeneui/images/add_new_document.png

src/ugeneui/images/advanced_open.png

src/ugeneui/images/bin_empty.png

src/ugeneui/images/book_open.png

src/ugeneui/images/cancel.png

src/ugeneui/images/clock.png

src/ugeneui/images/create_new_project.png

src/ugeneui/images/empty_notification.png

src/ugeneui/images/ext.ico

src/ugeneui/images/has_error.png

src/ugeneui/images/has_report.png

src/ugeneui/images/hourglass.png

src/ugeneui/images/hourglass_err.png

src/ugeneui/images/hourglass_go.png

src/ugeneui/images/hourglass_ok.png

src/ugeneui/images/lightbulb.png

src/ugeneui/images/lightbulb_off.png

src/ugeneui/images/log_settings.png

src/ugeneui/images/net_settings.png

src/ugeneui/images/originals

src/ugeneui/images/originals/ugene_128.png

src/ugeneui/images/originals/ugene_16.png

src/ugeneui/images/originals/ugene_20.png

src/ugeneui/images/originals/ugene_32.png

src/ugeneui/images/originals/ugene_48.png

src/ugeneui/images/originals/ugene_64.png

src/ugeneui/images/plugins.png

src/ugeneui/images/preferences.png

src/ugeneui/images/project.png

src/ugeneui/images/project_filter.png

src/ugeneui/images/project_new.png

src/ugeneui/images/project_open.png

src/ugeneui/images/project_save.png

src/ugeneui/images/relocate.png

src/ugeneui/images/save_copy.png

src/ugeneui/images/save_selected_documents.png

src/ugeneui/images/script_registry.png

src/ugeneui/images/service.png

src/ugeneui/images/task_report.png

src/ugeneui/images/ugene.ico

src/ugeneui/images/ugene_16.png

src/ugeneui/images/ugene_32.xpm

src/ugeneui/images/ugeneui.icns

src/ugeneui/images/window_cascade.png

src/ugeneui/images/window_next.png

src/ugeneui/images/window_prev.png

src/ugeneui/images/window_tile.png

src/ugeneui/images/world_go.png

src/ugeneui/src

src/ugeneui/src/Main.cpp

src/ugeneui/src/app_settings

src/ugeneui/src/app_settings/AppSettingsDialogController.cpp

src/ugeneui/src/app_settings/AppSettingsDialogController.h

src/ugeneui/src/app_settings/AppSettingsDialogTree.h

src/ugeneui/src/app_settings/AppSettingsGUIImpl.cpp

src/ugeneui/src/app_settings/AppSettingsGUIImpl.h

src/ugeneui/src/app_settings/logview_settings

src/ugeneui/src/app_settings/logview_settings/LogSettingsGUIController.cpp

src/ugeneui/src/app_settings/logview_settings/LogSettingsGUIController.h

src/ugeneui/src/app_settings/logview_settings/ui

src/ugeneui/src/app_settings/logview_settings/ui/LogSettingsWidget.ui

src/ugeneui/src/app_settings/network_settings

src/ugeneui/src/app_settings/network_settings/NetworkSettingsGUIController.cpp

src/ugeneui/src/app_settings/network_settings/NetworkSettingsGUIController.h

src/ugeneui/src/app_settings/network_settings/ui

src/ugeneui/src/app_settings/network_settings/ui/NetworkSettingsWidget.ui

src/ugeneui/src/app_settings/resource_settings

src/ugeneui/src/app_settings/resource_settings/ResourceSettingsGUIController.cpp

src/ugeneui/src/app_settings/resource_settings/ResourceSettingsGUIController.h

src/ugeneui/src/app_settings/resource_settings/ui

src/ugeneui/src/app_settings/resource_settings/ui/ResourceSettingsWidget.ui

src/ugeneui/src/app_settings/ui

src/ugeneui/src/app_settings/ui/AppSettingsDialog.ui

src/ugeneui/src/app_settings/user_apps_settings

src/ugeneui/src/app_settings/user_apps_settings/UserApplicationsSettingsGUIController.cpp

src/ugeneui/src/app_settings/user_apps_settings/UserApplicationsSettingsGUIController.h

src/ugeneui/src/app_settings/user_apps_settings/ui

src/ugeneui/src/app_settings/user_apps_settings/ui/UserApplicationsSettingsWidget.ui

src/ugeneui/src/main_window

src/ugeneui/src/main_window/AboutDialogController.cpp

src/ugeneui/src/main_window/AboutDialogController.h

src/ugeneui/src/main_window/CheckUpdatesTask.cpp

src/ugeneui/src/main_window/CheckUpdatesTask.h

src/ugeneui/src/main_window/DockManagerImpl.cpp

src/ugeneui/src/main_window/DockManagerImpl.h

src/ugeneui/src/main_window/MDIManagerImpl.cpp

src/ugeneui/src/main_window/MDIManagerImpl.h

src/ugeneui/src/main_window/MainWindowImpl.cpp

src/ugeneui/src/main_window/MainWindowImpl.h

src/ugeneui/src/main_window/MenuManager.cpp

src/ugeneui/src/main_window/MenuManager.h

src/ugeneui/src/main_window/ShutdownTask.cpp

src/ugeneui/src/main_window/ShutdownTask.h

src/ugeneui/src/main_window/ToolBarManager.cpp

src/ugeneui/src/main_window/ToolBarManager.h

src/ugeneui/src/main_window/ui

src/ugeneui/src/main_window/ui/AboutDialog.ui

src/ugeneui/src/plugin_viewer

src/ugeneui/src/plugin_viewer/PluginViewerController.cpp

src/ugeneui/src/plugin_viewer/PluginViewerController.h

src/ugeneui/src/plugin_viewer/PluginViewerImpl.cpp

src/ugeneui/src/plugin_viewer/PluginViewerImpl.h

src/ugeneui/src/plugin_viewer/ui

src/ugeneui/src/plugin_viewer/ui/PluginViewerWidget.ui

src/ugeneui/src/project_support

src/ugeneui/src/project_support/DocumentFormatSelectorController.cpp

src/ugeneui/src/project_support/DocumentFormatSelectorController.h

src/ugeneui/src/project_support/DocumentReadingModeSelectorController.cpp

src/ugeneui/src/project_support/DocumentReadingModeSelectorController.h

src/ugeneui/src/project_support/ExportProjectDialogController.cpp

src/ugeneui/src/project_support/ExportProjectDialogController.h

src/ugeneui/src/project_support/ProjectImpl.cpp

src/ugeneui/src/project_support/ProjectImpl.h

src/ugeneui/src/project_support/ProjectLoaderImpl.cpp

src/ugeneui/src/project_support/ProjectLoaderImpl.h

src/ugeneui/src/project_support/ProjectServiceImpl.cpp

src/ugeneui/src/project_support/ProjectServiceImpl.h

src/ugeneui/src/project_support/ProjectTasksGui.cpp

src/ugeneui/src/project_support/ProjectTasksGui.h

src/ugeneui/src/project_support/ui

src/ugeneui/src/project_support/ui/CreateNewProjectWidget.ui

src/ugeneui/src/project_support/ui/DocumentFormatSelectorDialog.ui

src/ugeneui/src/project_support/ui/ExportProjectDialog.ui

src/ugeneui/src/project_support/ui/SequenceReadingModeSelectorDialog.ui

src/ugeneui/src/project_view

src/ugeneui/src/project_view/BuiltInObjectViews.cpp

src/ugeneui/src/project_view/ProjectViewDocTree.cpp

src/ugeneui/src/project_view/ProjectViewDocTree.h

src/ugeneui/src/project_view/ProjectViewImpl.cpp

src/ugeneui/src/project_view/ProjectViewImpl.h

src/ugeneui/src/project_view/ui

src/ugeneui/src/project_view/ui/ProjectViewWidget.ui

src/ugeneui/src/script

src/ugeneui/src/script/ui

src/ugeneui/src/script/ui/ScriptLibraryEditor.ui

src/ugeneui/src/shtirlitz

src/ugeneui/src/shtirlitz/Shtirlitz.cpp

src/ugeneui/src/shtirlitz/Shtirlitz.h

src/ugeneui/src/task_view

src/ugeneui/src/task_view/TaskStatusBar.cpp

src/ugeneui/src/task_view/TaskStatusBar.h

src/ugeneui/src/task_view/TaskViewController.cpp

src/ugeneui/src/task_view/TaskViewController.h

src/ugeneui/transl

src/ugeneui/transl/czech.ts

src/ugeneui/transl/english.ts

src/ugeneui/transl/russian.ts

src/ugeneui/ugeneui.pri

src/ugeneui/ugeneui.pro

src/ugeneui/ugeneui.qrc

src/ugeneui/ugeneui.rc

files removed:
data/samples/1CF7.PDB

data/samples/1CRN.PDB

data/samples/3INS.PDB

data/samples/human_T1.fa

data/samples/murine.gb

data/samples/sars.gb

data/sitecon_models/CEBP_a.sef.sitecon

data/sitecon_models/CEBPall.sef.sitecon

data/sitecon_models/CLOCK.sef.sitecon

data/sitecon_models/CRE.sef.sitecon

data/sitecon_models/E2F1.sef.sitecon

data/sitecon_models/E2F1DP1sel1.sef.sitecon

data/sitecon_models/EGR1.sef.sitecon

data/sitecon_models/Eklf.sef.sitecon

data/sitecon_models/GATA1.sef.sitecon

data/sitecon_models/GATA_ALL.sef.sitecon

data/sitecon_models/Gata2.sef.sitecon

data/sitecon_models/Gata3.sef.sitecon

data/sitecon_models/HMG1.sef.sitecon

data/sitecon_models/HNF1.sef.sitecon

data/sitecon_models/HNF3_4.sef.sitecon

data/sitecon_models/HNF4.sef.sitecon

data/sitecon_models/MYOGsel3.sef.sitecon

data/sitecon_models/MyoD.sef.sitecon

data/sitecon_models/NF1.sef.sitecon

data/sitecon_models/NFATp.sef.sitecon

data/sitecon_models/NFkB_all.sef.sitecon

data/sitecon_models/NFkB_hetero.sef.sitecon

data/sitecon_models/NFkB_homo.sef.sitecon

data/sitecon_models/Nf_e2.sef.sitecon

data/sitecon_models/Nrf2.sef.sitecon

data/sitecon_models/Oct1.sef.sitecon

data/sitecon_models/Oct_all.sef.sitecon

data/sitecon_models/PPRE.sef.sitecon

data/sitecon_models/Pu1.sef.sitecon

data/sitecon_models/SRE_can.sef.sitecon

data/sitecon_models/STAT.sef.sitecon

data/sitecon_models/STAT1.sef.sitecon

data/sitecon_models/TTF1.sef.sitecon

data/sitecon_models/USF.sef.sitecon

data/sitecon_models/cMyc_can.sef.sitecon

data/sitecon_models/er2.sef.sitecon

data/sitecon_models/irf.sef.sitecon

data/sitecon_models/isre.sef.sitecon

data/sitecon_models/nfy.sef.sitecon

data/sitecon_models/p53.sef.sitecon

data/sitecon_models/setCREB.sef.sitecon

data/sitecon_models/setCREBzag.sef.sitecon

data/sitecon_models/srf_all.sef.sitecon

data/sitecon_models/yy1.sef.sitecon

scripts

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scripts/blastp.qs

scripts/cdd.qs

src/core

src/core/core.pri

src/core/core.pro

src/core/core.qrc

src/core/images

src/core/images/Thumbs.db

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src/core/images/add_existing_document.png

src/core/images/add_new_document.png

src/core/images/adv_widget_menu.png

src/core/images/annotation_settings.png

src/core/images/bookmark.png

src/core/images/bookmark_add.png

src/core/images/bookmark_edit.png

src/core/images/bookmark_inactive.png

src/core/images/bookmark_item.png

src/core/images/bookmark_remove.png

src/core/images/color_wheel.png

src/core/images/copy_annotation_sequence.png

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src/core/images/copy_complement_sequence.png

src/core/images/copy_complement_translation.png

src/core/images/copy_sequence.png

src/core/images/copy_translation.png

src/core/images/create_annotation.png

src/core/images/create_annotation_icon.png

src/core/images/document.png

src/core/images/find_dialog.png

src/core/images/gobject.png

src/core/images/goto.png

src/core/images/group_green_active.png

src/core/images/load_selected_documents.png

src/core/images/lock.png

src/core/images/minus.png

src/core/images/msa.png

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src/core/images/msaed_remove_columns_with_gaps.png

src/core/images/plus.png

src/core/images/remove_column.png

src/core/images/remove_selected_documents.png

src/core/images/ro_document.png

src/core/images/select_region.png

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src/core/src

src/core/src/core_api

src/core/src/core_api/AppContext.cpp

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src/core/src/core_api/AppSettings.h

src/core/src/core_api/AppSettingsGUI.h

src/core/src/core_api/DBXRefRegistry.cpp

src/core/src/core_api/DBXRefRegistry.h

src/core/src/core_api/DNAAlphabet.cpp

src/core/src/core_api/DNAAlphabet.h

src/core/src/core_api/DNATranslation.cpp

src/core/src/core_api/DNATranslation.h

src/core/src/core_api/DocumentFormatConfigurators.cpp

src/core/src/core_api/DocumentFormatConfigurators.h

src/core/src/core_api/DocumentFormats.cpp

src/core/src/core_api/DocumentFormats.h

src/core/src/core_api/DocumentModel.cpp

src/core/src/core_api/DocumentModel.h

src/core/src/core_api/GHints.h

src/core/src/core_api/GObject.cpp

src/core/src/core_api/GObject.h

src/core/src/core_api/GObjectReference.h

src/core/src/core_api/IOAdapter.cpp

src/core/src/core_api/IOAdapter.h

src/core/src/core_api/LRegion.cpp

src/core/src/core_api/LRegion.h

src/core/src/core_api/Log.cpp

src/core/src/core_api/Log.h

src/core/src/core_api/MainWindow.cpp

src/core/src/core_api/MainWindow.h

src/core/src/core_api/NetworkConfiguration.cpp

src/core/src/core_api/NetworkConfiguration.h

src/core/src/core_api/ObjectViewModel.cpp

src/core/src/core_api/ObjectViewModel.h

src/core/src/core_api/PluginModel.h

src/core/src/core_api/PluginViewer.h

src/core/src/core_api/ProjectModel.h

src/core/src/core_api/ProjectView.h

src/core/src/core_api/ResourceTracker.cpp

src/core/src/core_api/ResourceTracker.h

src/core/src/core_api/ScriptRegistry.cpp

src/core/src/core_api/ScriptRegistry.h

src/core/src/core_api/SelectionModel.cpp

src/core/src/core_api/SelectionModel.h

src/core/src/core_api/ServiceModel.cpp

src/core/src/core_api/ServiceModel.h

src/core/src/core_api/ServiceTypes.h

src/core/src/core_api/Settings.h

src/core/src/core_api/StateLockableDataModel.cpp

src/core/src/core_api/StateLockableDataModel.h

src/core/src/core_api/Task.cpp

src/core/src/core_api/Task.h

src/core/src/core_api/UserApplicationsSettings.cpp

src/core/src/core_api/UserApplicationsSettings.h

src/core/src/core_api/Vector3D.cpp

src/core/src/core_api/Vector3D.h

src/core/src/core_api/core_api.h

src/core/src/datatype

src/core/src/datatype/AnnotationData.h

src/core/src/datatype/BioStruct3D.cpp

src/core/src/datatype/BioStruct3D.h

src/core/src/datatype/DNAChromatogram.h

src/core/src/datatype/DNASequence.cpp

src/core/src/datatype/DNASequence.h

src/core/src/datatype/MAlignment.cpp

src/core/src/datatype/MAlignment.h

src/core/src/datatype/PhyTree.cpp

src/core/src/datatype/PhyTree.h

src/core/src/document_format

src/core/src/document_format/ABIFormat.cpp

src/core/src/document_format/ABIFormat.h

src/core/src/document_format/BaseAlphabets.cpp

src/core/src/document_format/BaseTranslations.cpp

src/core/src/document_format/ClustalWAlnFormat.cpp

src/core/src/document_format/ClustalWAlnFormat.h

src/core/src/document_format/DNAAlphabetRegistryImpl.cpp

src/core/src/document_format/DNAAlphabetRegistryImpl.h

src/core/src/document_format/DNATranslationImpl.cpp

src/core/src/document_format/DNATranslationImpl.h

src/core/src/document_format/DocumentFormatUtils.cpp

src/core/src/document_format/DocumentFormatUtils.h

src/core/src/document_format/EMBLGenbankAbstractDocument.cpp

src/core/src/document_format/EMBLGenbankAbstractDocument.h

src/core/src/document_format/EMBLPlainTextFormat.cpp

src/core/src/document_format/EMBLPlainTextFormat.h

src/core/src/document_format/FastaFormat.cpp

src/core/src/document_format/FastaFormat.h

src/core/src/document_format/GenbankLocationParser.cpp

src/core/src/document_format/GenbankLocationParser.h

src/core/src/document_format/GenbankPlainTextFormat.cpp

src/core/src/document_format/GenbankPlainTextFormat.h

src/core/src/document_format/IOLibUtils.h

src/core/src/document_format/NewickFormat.cpp

src/core/src/document_format/NewickFormat.h

src/core/src/document_format/PDBFormat.cpp

src/core/src/document_format/PDBFormat.h

src/core/src/document_format/PlainTextFormat.cpp

src/core/src/document_format/PlainTextFormat.h

src/core/src/document_format/RawDNASequenceFormat.cpp

src/core/src/document_format/RawDNASequenceFormat.h

src/core/src/document_format/SCFFormat.cpp

src/core/src/document_format/SCFFormat.h

src/core/src/document_format/StockholmFormat.cpp

src/core/src/document_format/StockholmFormat.h

src/core/src/gobjects

src/core/src/gobjects/AnnotationSettings.cpp

src/core/src/gobjects/AnnotationSettings.h

src/core/src/gobjects/AnnotationTableObject.cpp

src/core/src/gobjects/AnnotationTableObject.h

src/core/src/gobjects/BioStruct3DObject.cpp

src/core/src/gobjects/BioStruct3DObject.h

src/core/src/gobjects/DNAChromatogramObject.cpp

src/core/src/gobjects/DNAChromatogramObject.h

src/core/src/gobjects/DNASequenceObject.cpp

src/core/src/gobjects/DNASequenceObject.h

src/core/src/gobjects/GObjectRelationRoles.cpp

src/core/src/gobjects/GObjectRelationRoles.h

src/core/src/gobjects/GObjectTypes.cpp

src/core/src/gobjects/GObjectTypes.h

src/core/src/gobjects/GObjectUtils.cpp

src/core/src/gobjects/GObjectUtils.h

src/core/src/gobjects/MAlignmentObject.cpp

src/core/src/gobjects/MAlignmentObject.h

src/core/src/gobjects/PhyTreeObject.cpp

src/core/src/gobjects/PhyTreeObject.h

src/core/src/gobjects/TextObject.cpp

src/core/src/gobjects/TextObject.h

src/core/src/ioadapter

src/core/src/ioadapter/HttpFileAdapter.cpp

src/core/src/ioadapter/HttpFileAdapter.h

src/core/src/ioadapter/LocalFileAdapter.cpp

src/core/src/ioadapter/LocalFileAdapter.h

src/core/src/ioadapter/ZlibAdapter.cpp

src/core/src/ioadapter/ZlibAdapter.h

src/core/src/selection

src/core/src/selection/AnnotationSelection.cpp

src/core/src/selection/AnnotationSelection.h

src/core/src/selection/DNASequenceSelection.h

src/core/src/selection/DocumentSelection.cpp

src/core/src/selection/DocumentSelection.h

src/core/src/selection/GObjectSelection.cpp

src/core/src/selection/GObjectSelection.h

src/core/src/selection/LRegionsSelection.cpp

src/core/src/selection/LRegionsSelection.h

src/core/src/selection/SelectionTypes.cpp

src/core/src/selection/SelectionTypes.h

src/core/src/selection/SelectionUtils.cpp

src/core/src/selection/SelectionUtils.h

src/core/src/selection/TextSelection.h

src/core/src/test_framework

src/core/src/test_framework/GTest.cpp

src/core/src/test_framework/GTest.h

src/core/src/test_framework/GTestFrameworkComponents.cpp

src/core/src/test_framework/GTestFrameworkComponents.h

src/core/src/test_framework/find_algo

src/core/src/test_framework/find_algo/FindAlgorithmTestFormat.cpp

src/core/src/test_framework/find_algo/FindAlgorithmTestFormat.h

src/core/src/test_framework/xmltest

src/core/src/test_framework/xmltest/AnnotationTableObjectTest.cpp

src/core/src/test_framework/xmltest/AnnotationTableObjectTest.h

src/core/src/test_framework/xmltest/BioStruct3DObjectTests.cpp

src/core/src/test_framework/xmltest/BioStruct3DObjectTests.h

src/core/src/test_framework/xmltest/DNASequenceObjectTests.cpp

src/core/src/test_framework/xmltest/DNASequenceObjectTests.h

src/core/src/test_framework/xmltest/DNATranslationImplTests.cpp

src/core/src/test_framework/xmltest/DNATranslationImplTests.h

src/core/src/test_framework/xmltest/DocumentModelTests.cpp

src/core/src/test_framework/xmltest/DocumentModelTests.h

src/core/src/test_framework/xmltest/TaskTests.cpp

src/core/src/test_framework/xmltest/TaskTests.h

src/core/src/test_framework/xmltest/XMLTestFormat.cpp

src/core/src/test_framework/xmltest/XMLTestFormat.h

src/core/src/test_framework/xmltest/XMLTestUtils.cpp

src/core/src/test_framework/xmltest/XMLTestUtils.h

src/core/src/util_algorithm

src/core/src/util_algorithm/DynTable.h

src/core/src/util_algorithm/FindAlgorithm.cpp

src/core/src/util_algorithm/FindAlgorithm.h

src/core/src/util_algorithm/FindAlgorithmTask.cpp

src/core/src/util_algorithm/FindAlgorithmTask.h

src/core/src/util_algorithm/GAutoDeleteList.h

src/core/src/util_algorithm/MSAUtils.cpp

src/core/src/util_algorithm/MSAUtils.h

src/core/src/util_algorithm/ORFAlgorithmTask.cpp

src/core/src/util_algorithm/ORFAlgorithmTask.h

src/core/src/util_algorithm/ORFFinder.cpp

src/core/src/util_algorithm/ORFFinder.h

src/core/src/util_algorithm/RingBuffer.h

src/core/src/util_algorithm/RollingArray.h

src/core/src/util_algorithm/RollingMatrix.h

src/core/src/util_find_dialog

src/core/src/util_find_dialog/FindDialog.cpp

src/core/src/util_find_dialog/FindDialog.h

src/core/src/util_find_dialog/ui

src/core/src/util_find_dialog/ui/FindDialogUI.ui

src/core/src/util_gui

src/core/src/util_gui/AddExistingDocumentDialogImpl.cpp

src/core/src/util_gui/AddExistingDocumentDialogImpl.h

src/core/src/util_gui/AddNewDocumentDialogImpl.cpp

src/core/src/util_gui/AddNewDocumentDialogImpl.h

src/core/src/util_gui/AnnotationSettingsDialogController.cpp

src/core/src/util_gui/AnnotationSettingsDialogController.h

src/core/src/util_gui/BaseDocumentFormatConfigurators.cpp

src/core/src/util_gui/BaseDocumentFormatConfigurators.h

src/core/src/util_gui/CreateAnnotationDialog.cpp

src/core/src/util_gui/CreateAnnotationDialog.h

src/core/src/util_gui/CreateAnnotationWidgetController.cpp

src/core/src/util_gui/CreateAnnotationWidgetController.h

src/core/src/util_gui/CreateObjectRelationDialogController.cpp

src/core/src/util_gui/CreateObjectRelationDialogController.h

src/core/src/util_gui/DialogUtils.cpp

src/core/src/util_gui/DialogUtils.h

src/core/src/util_gui/DocumentFormatComboboxController.cpp

src/core/src/util_gui/DocumentFormatComboboxController.h

src/core/src/util_gui/GObjectComboBoxController.cpp

src/core/src/util_gui/GObjectComboBoxController.h

src/core/src/util_gui/GScrollBar.h

src/core/src/util_gui/GUIUtils.cpp

src/core/src/util_gui/GUIUtils.h

src/core/src/util_gui/GraphUtils.cpp

src/core/src/util_gui/GraphUtils.h

src/core/src/util_gui/ObjectViewTreeController.cpp

src/core/src/util_gui/ObjectViewTreeController.h

src/core/src/util_gui/PositionSelector.cpp

src/core/src/util_gui/PositionSelector.h

src/core/src/util_gui/ProjectDocumentComboBoxController.cpp

src/core/src/util_gui/ProjectDocumentComboBoxController.h

src/core/src/util_gui/ProjectTreeController.cpp

src/core/src/util_gui/ProjectTreeController.h

src/core/src/util_gui/ProjectTreeItemSelectorDialog.cpp

src/core/src/util_gui/ProjectTreeItemSelectorDialog.h

src/core/src/util_gui/RangeSelector.cpp

src/core/src/util_gui/RangeSelector.h

src/core/src/util_gui/ui

src/core/src/util_gui/ui/AddExistingDocumentDialog.ui

src/core/src/util_gui/ui/AddNewDocumentDialog.ui

src/core/src/util_gui/ui/AnnotationSettingsDialog.ui

src/core/src/util_gui/ui/CreateAnnotationWidget.ui

src/core/src/util_gui/ui/CreateNewObjectDialog.ui

src/core/src/util_gui/ui/CreateObjectRelationDialog.ui

src/core/src/util_gui/ui/FormatSettingsDialog.ui

src/core/src/util_gui/ui/MultipartDocFormatConfiguratorWidget.ui

src/core/src/util_gui/ui/ProjectTreeItemSelectorDialogBase.ui

src/core/src/util_ov_annotated_dna

src/core/src/util_ov_annotated_dna/ADVAlignmentSupport.cpp

src/core/src/util_ov_annotated_dna/ADVAlignmentSupport.h

src/core/src/util_ov_annotated_dna/ADVAnnotationCreation.cpp

src/core/src/util_ov_annotated_dna/ADVAnnotationCreation.h

src/core/src/util_ov_annotated_dna/ADVClipboard.cpp

src/core/src/util_ov_annotated_dna/ADVClipboard.h

src/core/src/util_ov_annotated_dna/ADVConstants.h

src/core/src/util_ov_annotated_dna/ADVGraphModel.cpp

src/core/src/util_ov_annotated_dna/ADVGraphModel.h

src/core/src/util_ov_annotated_dna/ADVSequenceObjectContext.cpp

src/core/src/util_ov_annotated_dna/ADVSequenceObjectContext.h

src/core/src/util_ov_annotated_dna/ADVSequenceWidget.cpp

src/core/src/util_ov_annotated_dna/ADVSequenceWidget.h

src/core/src/util_ov_annotated_dna/ADVSingleSequenceWidget.cpp

src/core/src/util_ov_annotated_dna/ADVSingleSequenceWidget.h

src/core/src/util_ov_annotated_dna/ADVSplitWidget.cpp

src/core/src/util_ov_annotated_dna/ADVSplitWidget.h

src/core/src/util_ov_annotated_dna/AnnotatedDNAView.cpp

src/core/src/util_ov_annotated_dna/AnnotatedDNAView.h

src/core/src/util_ov_annotated_dna/AnnotatedDNAViewFactory.cpp

src/core/src/util_ov_annotated_dna/AnnotatedDNAViewFactory.h

src/core/src/util_ov_annotated_dna/AnnotatedDNAViewState.cpp

src/core/src/util_ov_annotated_dna/AnnotatedDNAViewState.h

src/core/src/util_ov_annotated_dna/AnnotatedDNAViewTasks.cpp

src/core/src/util_ov_annotated_dna/AnnotatedDNAViewTasks.h

src/core/src/util_ov_annotated_dna/AnnotationsTreeView.cpp

src/core/src/util_ov_annotated_dna/AnnotationsTreeView.h

src/core/src/util_ov_annotated_dna/DetView.cpp

src/core/src/util_ov_annotated_dna/DetView.h

src/core/src/util_ov_annotated_dna/GSequenceGraphView.cpp

src/core/src/util_ov_annotated_dna/GSequenceGraphView.h

src/core/src/util_ov_annotated_dna/GSequenceLineView.cpp

src/core/src/util_ov_annotated_dna/GSequenceLineView.h

src/core/src/util_ov_annotated_dna/GSequenceLineViewAnnotated.cpp

src/core/src/util_ov_annotated_dna/GSequenceLineViewAnnotated.h

src/core/src/util_ov_annotated_dna/PanView.cpp

src/core/src/util_ov_annotated_dna/PanView.h

src/core/src/util_ov_annotated_dna/PanViewRows.cpp

src/core/src/util_ov_annotated_dna/PanViewRows.h

src/core/src/util_ov_annotated_dna/WindowStepSelectorWidget.cpp

src/core/src/util_ov_annotated_dna/WindowStepSelectorWidget.h

src/core/src/util_ov_msaedit

src/core/src/util_ov_msaedit/MSAEditor.cpp

src/core/src/util_ov_msaedit/MSAEditor.h

src/core/src/util_ov_msaedit/MSAEditorConsensusArea.cpp

src/core/src/util_ov_msaedit/MSAEditorConsensusArea.h

src/core/src/util_ov_msaedit/MSAEditorFactory.cpp

src/core/src/util_ov_msaedit/MSAEditorFactory.h

src/core/src/util_ov_msaedit/MSAEditorNameList.cpp

src/core/src/util_ov_msaedit/MSAEditorNameList.h

src/core/src/util_ov_msaedit/MSAEditorSequenceArea.cpp

src/core/src/util_ov_msaedit/MSAEditorSequenceArea.h

src/core/src/util_ov_msaedit/MSAEditorState.cpp

src/core/src/util_ov_msaedit/MSAEditorState.h

src/core/src/util_ov_msaedit/MSAEditorTasks.cpp

src/core/src/util_ov_msaedit/MSAEditorTasks.h

src/core/src/util_ov_textview

src/core/src/util_ov_textview/SimpleTextObjectView.cpp

src/core/src/util_ov_textview/SimpleTextObjectView.h

src/core/src/util_ov_textview/SimpleTextObjectViewTasks.cpp

src/core/src/util_ov_textview/SimpleTextObjectViewTasks.h

src/core/src/util_tasks

src/core/src/util_tasks/AddDocumentTask.cpp

src/core/src/util_tasks/AddDocumentTask.h

src/core/src/util_tasks/CopyDataTask.cpp

src/core/src/util_tasks/CopyDataTask.h

src/core/src/util_tasks/CreateAnnotationTask.cpp

src/core/src/util_tasks/CreateAnnotationTask.h

src/core/src/util_tasks/LoadDocumentTask.cpp

src/core/src/util_tasks/LoadDocumentTask.h

src/core/src/util_tasks/MultiTask.cpp

src/core/src/util_tasks/MultiTask.h

src/core/src/util_tasks/ObjectViewTasks.cpp

src/core/src/util_tasks/ObjectViewTasks.h

src/core/src/util_tasks/ReloadScriptTask.cpp

src/core/src/util_tasks/ReloadScriptTask.h

src/core/src/util_tasks/RemoveDocumentTask.cpp

src/core/src/util_tasks/RemoveDocumentTask.h

src/core/src/util_tasks/SaveDocumentTask.cpp

src/core/src/util_tasks/SaveDocumentTask.h

src/core/src/util_tasks/SequenceWalkerTask.cpp

src/core/src/util_tasks/SequenceWalkerTask.h

src/core/src/util_tasks/SequenceWalkerTests

src/core/src/util_tasks/SequenceWalkerTests/SequenceWalkerTests.cpp

src/core/src/util_tasks/SequenceWalkerTests/SequenceWalkerTests.h

src/core/src/util_tasks/TaskSignalMapper.cpp

src/core/src/util_tasks/TaskSignalMapper.h

src/core/src/util_text

src/core/src/util_text/FormatUtils.cpp

src/core/src/util_text/FormatUtils.h

src/core/src/util_text/TextUtils.cpp

src/core/src/util_text/TextUtils.h

src/core/src/workflow

src/core/src/workflow/Attribute.cpp

src/core/src/workflow/Attribute.h

src/core/src/workflow/ConfigurationEditor.h

src/core/src/workflow/Datatype.h

src/core/src/workflow/DatatypeConversion.h

src/core/src/workflow/Descriptor.h

src/core/src/workflow/IntegralBus.cpp

src/core/src/workflow/IntegralBus.h

src/core/src/workflow/IntegralBusModel.cpp

src/core/src/workflow/IntegralBusModel.h

src/core/src/workflow/IntegralBusType.cpp

src/core/src/workflow/IntegralBusType.h

src/core/src/workflow/Schema.cpp

src/core/src/workflow/Schema.h

src/core/src/workflow/TypeSet.h

src/core/src/workflow/WorkflowEnv.cpp

src/core/src/workflow/WorkflowEnv.h

src/core/src/workflow/WorkflowManager.h

src/core/src/workflow/WorkflowModel.cpp

src/core/src/workflow/WorkflowModel.h

src/core/src/workflow/WorkflowRegistry.cpp

src/core/src/workflow/WorkflowRegistry.h

src/core/src/workflow/WorkflowTransport.cpp

src/core/src/workflow/WorkflowTransport.h

src/core/src/workflow_library

src/core/src/workflow_library/BioActorLibrary.cpp

src/core/src/workflow_library/BioActorLibrary.h

src/core/src/workflow_library/BioDataTypes.cpp

src/core/src/workflow_library/BioDatatypes.h

src/core/src/workflow_library/LocalDomain.cpp

src/core/src/workflow_library/LocalDomain.h

src/core/src/workflow_support

src/core/src/workflow_support/CoreDataTypes.cpp

src/core/src/workflow_support/CoreDataTypes.h

src/core/src/workflow_support/DelegateEditors.cpp

src/core/src/workflow_support/DelegateEditors.h

src/core/src/workflow_support/QVariantUtils.h

src/core/src/workflow_support/SchemaSerializer.cpp

src/core/src/workflow_support/SchemaSerializer.h

src/core/src/workflow_support/TypeMapEditor.cpp

src/core/src/workflow_support/TypeMapEditor.h

src/core/src/workflow_support/WorkflowEnvImpl.cpp

src/core/src/workflow_support/WorkflowEnvImpl.h

src/core/src/workflow_support/WorkflowUtils.cpp

src/core/src/workflow_support/WorkflowUtils.h

src/core/transl

src/core/transl/english.ts

src/core/transl/russian.ts

src/libs_3rdparty/qtbindings_core

src/libs_3rdparty/qtbindings_core/qtbindings_core.pri

src/libs_3rdparty/qtbindings_core/qtbindings_core.pro

src/libs_3rdparty/qtbindings_core/src

src/libs_3rdparty/qtbindings_core/src/main.cpp

src/libs_3rdparty/qtbindings_core/src/qtscript_Global.cpp

src/libs_3rdparty/qtbindings_core/src/qtscript_QBasicTimer.cpp

src/libs_3rdparty/qtbindings_core/src/qtscript_QBitArray.cpp

src/libs_3rdparty/qtbindings_core/src/qtscript_QBuffer.cpp

src/libs_3rdparty/qtbindings_core/src/qtscript_QByteArray.cpp

src/libs_3rdparty/qtbindings_core/src/qtscript_QByteArrayMatcher.cpp

src/libs_3rdparty/qtbindings_core/src/qtscript_QChildEvent.cpp

src/libs_3rdparty/qtbindings_core/src/qtscript_QCoreApplication.cpp

src/libs_3rdparty/qtbindings_core/src/qtscript_QCryptographicHash.cpp

src/libs_3rdparty/qtbindings_core/src/qtscript_QDataStream.cpp

src/libs_3rdparty/qtbindings_core/src/qtscript_QDir.cpp

src/libs_3rdparty/qtbindings_core/src/qtscript_QDirIterator.cpp

src/libs_3rdparty/qtbindings_core/src/qtscript_QDynamicPropertyChangeEvent.cpp

src/libs_3rdparty/qtbindings_core/src/qtscript_QEvent.cpp

src/libs_3rdparty/qtbindings_core/src/qtscript_QEventLoop.cpp

src/libs_3rdparty/qtbindings_core/src/qtscript_QFile.cpp

src/libs_3rdparty/qtbindings_core/src/qtscript_QFileInfo.cpp

src/libs_3rdparty/qtbindings_core/src/qtscript_QFileSystemWatcher.cpp

src/libs_3rdparty/qtbindings_core/src/qtscript_QFuture.cpp

src/libs_3rdparty/qtbindings_core/src/qtscript_QFutureIterator.cpp

src/libs_3rdparty/qtbindings_core/src/qtscript_QFutureSynchronizer.cpp

src/libs_3rdparty/qtbindings_core/src/qtscript_QFutureSynchronizerVoid.cpp

src/libs_3rdparty/qtbindings_core/src/qtscript_QFutureVoid.cpp

src/libs_3rdparty/qtbindings_core/src/qtscript_QFutureWatcher.cpp

src/libs_3rdparty/qtbindings_core/src/qtscript_QFutureWatcherVoid.cpp

src/libs_3rdparty/qtbindings_core/src/qtscript_QIODevice.cpp

src/libs_3rdparty/qtbindings_core/src/qtscript_QLibraryInfo.cpp

src/libs_3rdparty/qtbindings_core/src/qtscript_QLocale.cpp

src/libs_3rdparty/qtbindings_core/src/qtscript_QModelIndex.cpp

src/libs_3rdparty/qtbindings_core/src/qtscript_QMutex.cpp

src/libs_3rdparty/qtbindings_core/src/qtscript_QObject.cpp

src/libs_3rdparty/qtbindings_core/src/qtscript_QPoint.cpp

src/libs_3rdparty/qtbindings_core/src/qtscript_QPointF.cpp

src/libs_3rdparty/qtbindings_core/src/qtscript_QProcess.cpp

src/libs_3rdparty/qtbindings_core/src/qtscript_QRect.cpp

src/libs_3rdparty/qtbindings_core/src/qtscript_QRectF.cpp

src/libs_3rdparty/qtbindings_core/src/qtscript_QRunnable.cpp

src/libs_3rdparty/qtbindings_core/src/qtscript_QSemaphore.cpp

src/libs_3rdparty/qtbindings_core/src/qtscript_QSettings.cpp

src/libs_3rdparty/qtbindings_core/src/qtscript_QSignalMapper.cpp

src/libs_3rdparty/qtbindings_core/src/qtscript_QSize.cpp

src/libs_3rdparty/qtbindings_core/src/qtscript_QSizeF.cpp

src/libs_3rdparty/qtbindings_core/src/qtscript_QSocketNotifier.cpp

src/libs_3rdparty/qtbindings_core/src/qtscript_QStringMatcher.cpp

src/libs_3rdparty/qtbindings_core/src/qtscript_QSystemSemaphore.cpp

src/libs_3rdparty/qtbindings_core/src/qtscript_QTemporaryFile.cpp

src/libs_3rdparty/qtbindings_core/src/qtscript_QTextBoundaryFinder.cpp

src/libs_3rdparty/qtbindings_core/src/qtscript_QTextCodec.cpp

src/libs_3rdparty/qtbindings_core/src/qtscript_QTextDecoder.cpp

src/libs_3rdparty/qtbindings_core/src/qtscript_QTextEncoder.cpp

src/libs_3rdparty/qtbindings_core/src/qtscript_QTextStream.cpp

src/libs_3rdparty/qtbindings_core/src/qtscript_QThreadPool.cpp

src/libs_3rdparty/qtbindings_core/src/qtscript_QTime.cpp

src/libs_3rdparty/qtbindings_core/src/qtscript_QTimeLine.cpp

src/libs_3rdparty/qtbindings_core/src/qtscript_QTimer.cpp

src/libs_3rdparty/qtbindings_core/src/qtscript_QTimerEvent.cpp

src/libs_3rdparty/qtbindings_core/src/qtscript_QTranslator.cpp

src/libs_3rdparty/qtbindings_core/src/qtscript_QUrl.cpp

src/libs_3rdparty/qtbindings_core/src/qtscript_QUuid.cpp

src/libs_3rdparty/qtbindings_core/src/qtscript_QWaitCondition.cpp

src/libs_3rdparty/qtbindings_core/src/qtscript_QXmlStreamAttribute.cpp

src/libs_3rdparty/qtbindings_core/src/qtscript_QXmlStreamAttributes.cpp

src/libs_3rdparty/qtbindings_core/src/qtscript_QXmlStreamEntityDeclaration.cpp

src/libs_3rdparty/qtbindings_core/src/qtscript_QXmlStreamEntityResolver.cpp

src/libs_3rdparty/qtbindings_core/src/qtscript_QXmlStreamNamespaceDeclaration.cpp

src/libs_3rdparty/qtbindings_core/src/qtscript_QXmlStreamNotationDeclaration.cpp

src/libs_3rdparty/qtbindings_core/src/qtscript_QXmlStreamReader.cpp

src/libs_3rdparty/qtbindings_core/src/qtscript_QXmlStreamWriter.cpp

src/libs_3rdparty/qtbindings_core/src/qtscript_Qt.cpp

src/libs_3rdparty/qtbindings_core/src/qtscript_QtConcurrent.cpp

src/libs_3rdparty/qtbindings_core/src/qtscriptconcurrent.h

src/libs_3rdparty/qtbindings_core/src/qtscriptshell_QBuffer.cpp

src/libs_3rdparty/qtbindings_core/src/qtscriptshell_QBuffer.h

src/libs_3rdparty/qtbindings_core/src/qtscriptshell_QChildEvent.cpp

src/libs_3rdparty/qtbindings_core/src/qtscriptshell_QChildEvent.h

src/libs_3rdparty/qtbindings_core/src/qtscriptshell_QCoreApplication.cpp

src/libs_3rdparty/qtbindings_core/src/qtscriptshell_QCoreApplication.h

src/libs_3rdparty/qtbindings_core/src/qtscriptshell_QDataStream.cpp

src/libs_3rdparty/qtbindings_core/src/qtscriptshell_QDataStream.h

src/libs_3rdparty/qtbindings_core/src/qtscriptshell_QDirIterator.cpp

src/libs_3rdparty/qtbindings_core/src/qtscriptshell_QDirIterator.h

src/libs_3rdparty/qtbindings_core/src/qtscriptshell_QEvent.cpp

src/libs_3rdparty/qtbindings_core/src/qtscriptshell_QEvent.h

src/libs_3rdparty/qtbindings_core/src/qtscriptshell_QEventLoop.cpp

src/libs_3rdparty/qtbindings_core/src/qtscriptshell_QEventLoop.h

src/libs_3rdparty/qtbindings_core/src/qtscriptshell_QFile.cpp

src/libs_3rdparty/qtbindings_core/src/qtscriptshell_QFile.h

src/libs_3rdparty/qtbindings_core/src/qtscriptshell_QFileSystemWatcher.cpp

src/libs_3rdparty/qtbindings_core/src/qtscriptshell_QFileSystemWatcher.h

src/libs_3rdparty/qtbindings_core/src/qtscriptshell_QFutureSynchronizer.cpp

src/libs_3rdparty/qtbindings_core/src/qtscriptshell_QFutureSynchronizer.h

src/libs_3rdparty/qtbindings_core/src/qtscriptshell_QFutureSynchronizerVoid.cpp

src/libs_3rdparty/qtbindings_core/src/qtscriptshell_QFutureSynchronizerVoid.h

src/libs_3rdparty/qtbindings_core/src/qtscriptshell_QIODevice.cpp

src/libs_3rdparty/qtbindings_core/src/qtscriptshell_QIODevice.h

src/libs_3rdparty/qtbindings_core/src/qtscriptshell_QObject.cpp

src/libs_3rdparty/qtbindings_core/src/qtscriptshell_QObject.h

src/libs_3rdparty/qtbindings_core/src/qtscriptshell_QProcess.cpp

src/libs_3rdparty/qtbindings_core/src/qtscriptshell_QProcess.h

src/libs_3rdparty/qtbindings_core/src/qtscriptshell_QRunnable.cpp

src/libs_3rdparty/qtbindings_core/src/qtscriptshell_QRunnable.h

src/libs_3rdparty/qtbindings_core/src/qtscriptshell_QSettings.cpp

src/libs_3rdparty/qtbindings_core/src/qtscriptshell_QSettings.h

src/libs_3rdparty/qtbindings_core/src/qtscriptshell_QSignalMapper.cpp

src/libs_3rdparty/qtbindings_core/src/qtscriptshell_QSignalMapper.h

src/libs_3rdparty/qtbindings_core/src/qtscriptshell_QSocketNotifier.cpp

src/libs_3rdparty/qtbindings_core/src/qtscriptshell_QSocketNotifier.h

src/libs_3rdparty/qtbindings_core/src/qtscriptshell_QTemporaryFile.cpp

src/libs_3rdparty/qtbindings_core/src/qtscriptshell_QTemporaryFile.h

src/libs_3rdparty/qtbindings_core/src/qtscriptshell_QTextCodec.cpp

src/libs_3rdparty/qtbindings_core/src/qtscriptshell_QTextCodec.h

src/libs_3rdparty/qtbindings_core/src/qtscriptshell_QTextStream.cpp

src/libs_3rdparty/qtbindings_core/src/qtscriptshell_QTextStream.h

src/libs_3rdparty/qtbindings_core/src/qtscriptshell_QThreadPool.cpp

src/libs_3rdparty/qtbindings_core/src/qtscriptshell_QThreadPool.h

src/libs_3rdparty/qtbindings_core/src/qtscriptshell_QTimeLine.cpp

src/libs_3rdparty/qtbindings_core/src/qtscriptshell_QTimeLine.h

src/libs_3rdparty/qtbindings_core/src/qtscriptshell_QTimer.cpp

src/libs_3rdparty/qtbindings_core/src/qtscriptshell_QTimer.h

src/libs_3rdparty/qtbindings_core/src/qtscriptshell_QTimerEvent.cpp

src/libs_3rdparty/qtbindings_core/src/qtscriptshell_QTimerEvent.h

src/libs_3rdparty/qtbindings_core/src/qtscriptshell_QTranslator.cpp

src/libs_3rdparty/qtbindings_core/src/qtscriptshell_QTranslator.h

src/libs_3rdparty/qtbindings_core/src/qtscriptshell_QUuid.cpp

src/libs_3rdparty/qtbindings_core/src/qtscriptshell_QUuid.h

src/libs_3rdparty/qtbindings_core/src/qtscriptshell_QXmlStreamAttributes.cpp

src/libs_3rdparty/qtbindings_core/src/qtscriptshell_QXmlStreamAttributes.h

src/libs_3rdparty/qtbindings_core/src/qtscriptshell_QXmlStreamEntityResolver.cpp

src/libs_3rdparty/qtbindings_core/src/qtscriptshell_QXmlStreamEntityResolver.h

src/libs_3rdparty/qtbindings_gui

src/libs_3rdparty/qtbindings_gui/qtbindings_gui.pri

src/libs_3rdparty/qtbindings_gui/qtbindings_gui.pro

src/libs_3rdparty/qtbindings_gui/src

src/libs_3rdparty/qtbindings_gui/src/com_trolltech_qt_gui.pri

src/libs_3rdparty/qtbindings_gui/src/main.cpp

src/libs_3rdparty/qtbindings_gui/src/qtscript_QAbstractButton.cpp

src/libs_3rdparty/qtbindings_gui/src/qtscript_QAbstractGraphicsShapeItem.cpp

src/libs_3rdparty/qtbindings_gui/src/qtscript_QAbstractItemDelegate.cpp

src/libs_3rdparty/qtbindings_gui/src/qtscript_QAbstractItemView.cpp

src/libs_3rdparty/qtbindings_gui/src/qtscript_QAbstractPageSetupDialog.cpp

src/libs_3rdparty/qtbindings_gui/src/qtscript_QAbstractPrintDialog.cpp

src/libs_3rdparty/qtbindings_gui/src/qtscript_QAbstractScrollArea.cpp

src/libs_3rdparty/qtbindings_gui/src/qtscript_QAbstractSlider.cpp

src/libs_3rdparty/qtbindings_gui/src/qtscript_QAbstractSpinBox.cpp

src/libs_3rdparty/qtbindings_gui/src/qtscript_QAccessible.cpp

src/libs_3rdparty/qtbindings_gui/src/qtscript_QAccessible2Interface.cpp

src/libs_3rdparty/qtbindings_gui/src/qtscript_QAccessibleBridge.cpp

src/libs_3rdparty/qtbindings_gui/src/qtscript_QAccessibleEvent.cpp

src/libs_3rdparty/qtbindings_gui/src/qtscript_QAccessibleInterface.cpp

src/libs_3rdparty/qtbindings_gui/src/qtscript_QAccessibleInterfaceEx.cpp

src/libs_3rdparty/qtbindings_gui/src/qtscript_QAccessibleObject.cpp

src/libs_3rdparty/qtbindings_gui/src/qtscript_QAccessibleObjectEx.cpp

src/libs_3rdparty/qtbindings_gui/src/qtscript_QAccessiblePlugin.cpp

src/libs_3rdparty/qtbindings_gui/src/qtscript_QAccessibleTableInterface.cpp

src/libs_3rdparty/qtbindings_gui/src/qtscript_QAccessibleWidget.cpp

src/libs_3rdparty/qtbindings_gui/src/qtscript_QAccessibleWidgetEx.cpp

src/libs_3rdparty/qtbindings_gui/src/qtscript_QAction.cpp

src/libs_3rdparty/qtbindings_gui/src/qtscript_QActionEvent.cpp

src/libs_3rdparty/qtbindings_gui/src/qtscript_QActionGroup.cpp

src/libs_3rdparty/qtbindings_gui/src/qtscript_QApplication.cpp

src/libs_3rdparty/qtbindings_gui/src/qtscript_QBitmap.cpp

src/libs_3rdparty/qtbindings_gui/src/qtscript_QBoxLayout.cpp

src/libs_3rdparty/qtbindings_gui/src/qtscript_QBrush.cpp

src/libs_3rdparty/qtbindings_gui/src/qtscript_QButtonGroup.cpp

src/libs_3rdparty/qtbindings_gui/src/qtscript_QCDEStyle.cpp

src/libs_3rdparty/qtbindings_gui/src/qtscript_QCalendarWidget.cpp

src/libs_3rdparty/qtbindings_gui/src/qtscript_QCheckBox.cpp

src/libs_3rdparty/qtbindings_gui/src/qtscript_QCleanlooksStyle.cpp

src/libs_3rdparty/qtbindings_gui/src/qtscript_QClipboard.cpp

src/libs_3rdparty/qtbindings_gui/src/qtscript_QClipboardEvent.cpp

src/libs_3rdparty/qtbindings_gui/src/qtscript_QCloseEvent.cpp

src/libs_3rdparty/qtbindings_gui/src/qtscript_QColor.cpp

src/libs_3rdparty/qtbindings_gui/src/qtscript_QColorDialog.cpp

src/libs_3rdparty/qtbindings_gui/src/qtscript_QColumnView.cpp

src/libs_3rdparty/qtbindings_gui/src/qtscript_QComboBox.cpp

src/libs_3rdparty/qtbindings_gui/src/qtscript_QCommandLinkButton.cpp

src/libs_3rdparty/qtbindings_gui/src/qtscript_QCommonStyle.cpp

src/libs_3rdparty/qtbindings_gui/src/qtscript_QCompleter.cpp

src/libs_3rdparty/qtbindings_gui/src/qtscript_QConicalGradient.cpp

src/libs_3rdparty/qtbindings_gui/src/qtscript_QContextMenuEvent.cpp

src/libs_3rdparty/qtbindings_gui/src/qtscript_QCursor.cpp

src/libs_3rdparty/qtbindings_gui/src/qtscript_QDataWidgetMapper.cpp

src/libs_3rdparty/qtbindings_gui/src/qtscript_QDateEdit.cpp

src/libs_3rdparty/qtbindings_gui/src/qtscript_QDateTimeEdit.cpp

src/libs_3rdparty/qtbindings_gui/src/qtscript_QDesktopServices.cpp

src/libs_3rdparty/qtbindings_gui/src/qtscript_QDesktopWidget.cpp

src/libs_3rdparty/qtbindings_gui/src/qtscript_QDial.cpp

src/libs_3rdparty/qtbindings_gui/src/qtscript_QDialog.cpp

src/libs_3rdparty/qtbindings_gui/src/qtscript_QDialogButtonBox.cpp

src/libs_3rdparty/qtbindings_gui/src/qtscript_QDockWidget.cpp

src/libs_3rdparty/qtbindings_gui/src/qtscript_QDoubleSpinBox.cpp

src/libs_3rdparty/qtbindings_gui/src/qtscript_QDoubleValidator.cpp

src/libs_3rdparty/qtbindings_gui/src/qtscript_QDragEnterEvent.cpp

src/libs_3rdparty/qtbindings_gui/src/qtscript_QDragLeaveEvent.cpp

src/libs_3rdparty/qtbindings_gui/src/qtscript_QDragMoveEvent.cpp

src/libs_3rdparty/qtbindings_gui/src/qtscript_QDragResponseEvent.cpp

src/libs_3rdparty/qtbindings_gui/src/qtscript_QErrorMessage.cpp

src/libs_3rdparty/qtbindings_gui/src/qtscript_QFileDialog.cpp

src/libs_3rdparty/qtbindings_gui/src/qtscript_QFileIconProvider.cpp

src/libs_3rdparty/qtbindings_gui/src/qtscript_QFileOpenEvent.cpp

src/libs_3rdparty/qtbindings_gui/src/qtscript_QFocusEvent.cpp

src/libs_3rdparty/qtbindings_gui/src/qtscript_QFocusFrame.cpp

src/libs_3rdparty/qtbindings_gui/src/qtscript_QFont.cpp

src/libs_3rdparty/qtbindings_gui/src/qtscript_QFontComboBox.cpp

src/libs_3rdparty/qtbindings_gui/src/qtscript_QFontDialog.cpp

src/libs_3rdparty/qtbindings_gui/src/qtscript_QFontInfo.cpp

src/libs_3rdparty/qtbindings_gui/src/qtscript_QFontMetrics.cpp

src/libs_3rdparty/qtbindings_gui/src/qtscript_QFontMetricsF.cpp

src/libs_3rdparty/qtbindings_gui/src/qtscript_QFormLayout.cpp

src/libs_3rdparty/qtbindings_gui/src/qtscript_QFrame.cpp

src/libs_3rdparty/qtbindings_gui/src/qtscript_QGradient.cpp

src/libs_3rdparty/qtbindings_gui/src/qtscript_QGraphicsEllipseItem.cpp

src/libs_3rdparty/qtbindings_gui/src/qtscript_QGraphicsGridLayout.cpp

src/libs_3rdparty/qtbindings_gui/src/qtscript_QGraphicsItem.cpp

src/libs_3rdparty/qtbindings_gui/src/qtscript_QGraphicsItemAnimation.cpp

src/libs_3rdparty/qtbindings_gui/src/qtscript_QGraphicsItemGroup.cpp

src/libs_3rdparty/qtbindings_gui/src/qtscript_QGraphicsLayout.cpp

src/libs_3rdparty/qtbindings_gui/src/qtscript_QGraphicsLayoutItem.cpp

src/libs_3rdparty/qtbindings_gui/src/qtscript_QGraphicsLineItem.cpp

src/libs_3rdparty/qtbindings_gui/src/qtscript_QGraphicsLinearLayout.cpp

src/libs_3rdparty/qtbindings_gui/src/qtscript_QGraphicsPathItem.cpp

src/libs_3rdparty/qtbindings_gui/src/qtscript_QGraphicsPixmapItem.cpp

src/libs_3rdparty/qtbindings_gui/src/qtscript_QGraphicsPolygonItem.cpp

src/libs_3rdparty/qtbindings_gui/src/qtscript_QGraphicsProxyWidget.cpp

src/libs_3rdparty/qtbindings_gui/src/qtscript_QGraphicsRectItem.cpp

src/libs_3rdparty/qtbindings_gui/src/qtscript_QGraphicsScene.cpp

src/libs_3rdparty/qtbindings_gui/src/qtscript_QGraphicsSceneContextMenuEvent.cpp

src/libs_3rdparty/qtbindings_gui/src/qtscript_QGraphicsSceneEvent.cpp

src/libs_3rdparty/qtbindings_gui/src/qtscript_QGraphicsSceneHelpEvent.cpp

src/libs_3rdparty/qtbindings_gui/src/qtscript_QGraphicsSceneHoverEvent.cpp

src/libs_3rdparty/qtbindings_gui/src/qtscript_QGraphicsSceneMouseEvent.cpp

src/libs_3rdparty/qtbindings_gui/src/qtscript_QGraphicsSceneMoveEvent.cpp

src/libs_3rdparty/qtbindings_gui/src/qtscript_QGraphicsSceneResizeEvent.cpp

src/libs_3rdparty/qtbindings_gui/src/qtscript_QGraphicsSceneWheelEvent.cpp

src/libs_3rdparty/qtbindings_gui/src/qtscript_QGraphicsSimpleTextItem.cpp

src/libs_3rdparty/qtbindings_gui/src/qtscript_QGraphicsTextItem.cpp

src/libs_3rdparty/qtbindings_gui/src/qtscript_QGraphicsView.cpp

src/libs_3rdparty/qtbindings_gui/src/qtscript_QGraphicsWidget.cpp

src/libs_3rdparty/qtbindings_gui/src/qtscript_QGridLayout.cpp

src/libs_3rdparty/qtbindings_gui/src/qtscript_QGroupBox.cpp

src/libs_3rdparty/qtbindings_gui/src/qtscript_QHBoxLayout.cpp

src/libs_3rdparty/qtbindings_gui/src/qtscript_QHeaderView.cpp

src/libs_3rdparty/qtbindings_gui/src/qtscript_QHelpEvent.cpp

src/libs_3rdparty/qtbindings_gui/src/qtscript_QHideEvent.cpp

src/libs_3rdparty/qtbindings_gui/src/qtscript_QHoverEvent.cpp

src/libs_3rdparty/qtbindings_gui/src/qtscript_QIcon.cpp

src/libs_3rdparty/qtbindings_gui/src/qtscript_QIconDragEvent.cpp

src/libs_3rdparty/qtbindings_gui/src/qtscript_QIconEngine.cpp

src/libs_3rdparty/qtbindings_gui/src/qtscript_QIconEnginePluginV2.cpp

src/libs_3rdparty/qtbindings_gui/src/qtscript_QImage.cpp

src/libs_3rdparty/qtbindings_gui/src/qtscript_QImageIOHandler.cpp

src/libs_3rdparty/qtbindings_gui/src/qtscript_QImageIOPlugin.cpp

src/libs_3rdparty/qtbindings_gui/src/qtscript_QImageReader.cpp

src/libs_3rdparty/qtbindings_gui/src/qtscript_QImageWriter.cpp

src/libs_3rdparty/qtbindings_gui/src/qtscript_QInputContext.cpp

src/libs_3rdparty/qtbindings_gui/src/qtscript_QInputContextFactory.cpp

src/libs_3rdparty/qtbindings_gui/src/qtscript_QInputContextPlugin.cpp

src/libs_3rdparty/qtbindings_gui/src/qtscript_QInputDialog.cpp

src/libs_3rdparty/qtbindings_gui/src/qtscript_QInputEvent.cpp

src/libs_3rdparty/qtbindings_gui/src/qtscript_QIntValidator.cpp

src/libs_3rdparty/qtbindings_gui/src/qtscript_QItemDelegate.cpp

src/libs_3rdparty/qtbindings_gui/src/qtscript_QItemEditorCreatorBase.cpp

src/libs_3rdparty/qtbindings_gui/src/qtscript_QItemEditorFactory.cpp

src/libs_3rdparty/qtbindings_gui/src/qtscript_QItemSelection.cpp

src/libs_3rdparty/qtbindings_gui/src/qtscript_QKeyEvent.cpp

src/libs_3rdparty/qtbindings_gui/src/qtscript_QKeySequence.cpp

src/libs_3rdparty/qtbindings_gui/src/qtscript_QLCDNumber.cpp

src/libs_3rdparty/qtbindings_gui/src/qtscript_QLabel.cpp

src/libs_3rdparty/qtbindings_gui/src/qtscript_QLayout.cpp

src/libs_3rdparty/qtbindings_gui/src/qtscript_QLayoutItem.cpp

src/libs_3rdparty/qtbindings_gui/src/qtscript_QLine.cpp

src/libs_3rdparty/qtbindings_gui/src/qtscript_QLineEdit.cpp

src/libs_3rdparty/qtbindings_gui/src/qtscript_QLineF.cpp

src/libs_3rdparty/qtbindings_gui/src/qtscript_QLinearGradient.cpp

src/libs_3rdparty/qtbindings_gui/src/qtscript_QListView.cpp

src/libs_3rdparty/qtbindings_gui/src/qtscript_QListWidget.cpp

src/libs_3rdparty/qtbindings_gui/src/qtscript_QListWidgetItem.cpp

src/libs_3rdparty/qtbindings_gui/src/qtscript_QMainWindow.cpp

src/libs_3rdparty/qtbindings_gui/src/qtscript_QMatrix.cpp

src/libs_3rdparty/qtbindings_gui/src/qtscript_QMdiArea.cpp

src/libs_3rdparty/qtbindings_gui/src/qtscript_QMdiSubWindow.cpp

src/libs_3rdparty/qtbindings_gui/src/qtscript_QMenu.cpp

src/libs_3rdparty/qtbindings_gui/src/qtscript_QMenuBar.cpp

src/libs_3rdparty/qtbindings_gui/src/qtscript_QMessageBox.cpp

src/libs_3rdparty/qtbindings_gui/src/qtscript_QMotifStyle.cpp

src/libs_3rdparty/qtbindings_gui/src/qtscript_QMouseEvent.cpp

src/libs_3rdparty/qtbindings_gui/src/qtscript_QMoveEvent.cpp

src/libs_3rdparty/qtbindings_gui/src/qtscript_QMovie.cpp

src/libs_3rdparty/qtbindings_gui/src/qtscript_QPageSetupDialog.cpp

src/libs_3rdparty/qtbindings_gui/src/qtscript_QPaintDevice.cpp

src/libs_3rdparty/qtbindings_gui/src/qtscript_QPaintEngine.cpp

src/libs_3rdparty/qtbindings_gui/src/qtscript_QPaintEngineState.cpp

src/libs_3rdparty/qtbindings_gui/src/qtscript_QPaintEvent.cpp

src/libs_3rdparty/qtbindings_gui/src/qtscript_QPainter.cpp

src/libs_3rdparty/qtbindings_gui/src/qtscript_QPainterPath.cpp

src/libs_3rdparty/qtbindings_gui/src/qtscript_QPainterPathStroker.cpp

src/libs_3rdparty/qtbindings_gui/src/qtscript_QPalette.cpp

src/libs_3rdparty/qtbindings_gui/src/qtscript_QPen.cpp

src/libs_3rdparty/qtbindings_gui/src/qtscript_QPicture.cpp

src/libs_3rdparty/qtbindings_gui/src/qtscript_QPictureFormatPlugin.cpp

src/libs_3rdparty/qtbindings_gui/src/qtscript_QPictureIO.cpp

src/libs_3rdparty/qtbindings_gui/src/qtscript_QPixmap.cpp

src/libs_3rdparty/qtbindings_gui/src/qtscript_QPixmapCache.cpp

src/libs_3rdparty/qtbindings_gui/src/qtscript_QPlainTextDocumentLayout.cpp

src/libs_3rdparty/qtbindings_gui/src/qtscript_QPlainTextEdit.cpp

src/libs_3rdparty/qtbindings_gui/src/qtscript_QPlastiqueStyle.cpp

src/libs_3rdparty/qtbindings_gui/src/qtscript_QPolygon.cpp

src/libs_3rdparty/qtbindings_gui/src/qtscript_QPolygonF.cpp

src/libs_3rdparty/qtbindings_gui/src/qtscript_QPrintDialog.cpp

src/libs_3rdparty/qtbindings_gui/src/qtscript_QPrintEngine.cpp

src/libs_3rdparty/qtbindings_gui/src/qtscript_QPrintPreviewDialog.cpp

src/libs_3rdparty/qtbindings_gui/src/qtscript_QPrintPreviewWidget.cpp

src/libs_3rdparty/qtbindings_gui/src/qtscript_QPrinter.cpp

src/libs_3rdparty/qtbindings_gui/src/qtscript_QProgressBar.cpp

src/libs_3rdparty/qtbindings_gui/src/qtscript_QProgressDialog.cpp

src/libs_3rdparty/qtbindings_gui/src/qtscript_QPushButton.cpp

src/libs_3rdparty/qtbindings_gui/src/qtscript_QRadialGradient.cpp

src/libs_3rdparty/qtbindings_gui/src/qtscript_QRadioButton.cpp

src/libs_3rdparty/qtbindings_gui/src/qtscript_QReadWriteLock.cpp

src/libs_3rdparty/qtbindings_gui/src/qtscript_QRegExpValidator.cpp

src/libs_3rdparty/qtbindings_gui/src/qtscript_QRegion.cpp

src/libs_3rdparty/qtbindings_gui/src/qtscript_QResizeEvent.cpp

src/libs_3rdparty/qtbindings_gui/src/qtscript_QRubberBand.cpp

src/libs_3rdparty/qtbindings_gui/src/qtscript_QScrollArea.cpp

src/libs_3rdparty/qtbindings_gui/src/qtscript_QScrollBar.cpp

src/libs_3rdparty/qtbindings_gui/src/qtscript_QSessionManager.cpp

src/libs_3rdparty/qtbindings_gui/src/qtscript_QShortcut.cpp

src/libs_3rdparty/qtbindings_gui/src/qtscript_QShortcutEvent.cpp

src/libs_3rdparty/qtbindings_gui/src/qtscript_QShowEvent.cpp

src/libs_3rdparty/qtbindings_gui/src/qtscript_QSizeGrip.cpp

src/libs_3rdparty/qtbindings_gui/src/qtscript_QSizePolicy.cpp

src/libs_3rdparty/qtbindings_gui/src/qtscript_QSlider.cpp

src/libs_3rdparty/qtbindings_gui/src/qtscript_QSound.cpp

src/libs_3rdparty/qtbindings_gui/src/qtscript_QSpacerItem.cpp

src/libs_3rdparty/qtbindings_gui/src/qtscript_QSpinBox.cpp

src/libs_3rdparty/qtbindings_gui/src/qtscript_QSplashScreen.cpp

src/libs_3rdparty/qtbindings_gui/src/qtscript_QSplitter.cpp

src/libs_3rdparty/qtbindings_gui/src/qtscript_QSplitterHandle.cpp

src/libs_3rdparty/qtbindings_gui/src/qtscript_QStackedLayout.cpp

src/libs_3rdparty/qtbindings_gui/src/qtscript_QStackedWidget.cpp

src/libs_3rdparty/qtbindings_gui/src/qtscript_QStandardItem.cpp

src/libs_3rdparty/qtbindings_gui/src/qtscript_QStandardItemModel.cpp

src/libs_3rdparty/qtbindings_gui/src/qtscript_QStatusBar.cpp

src/libs_3rdparty/qtbindings_gui/src/qtscript_QStatusTipEvent.cpp

src/libs_3rdparty/qtbindings_gui/src/qtscript_QStringListModel.cpp

src/libs_3rdparty/qtbindings_gui/src/qtscript_QStyle.cpp

src/libs_3rdparty/qtbindings_gui/src/qtscript_QStyleFactory.cpp

src/libs_3rdparty/qtbindings_gui/src/qtscript_QStyleHintReturn.cpp

src/libs_3rdparty/qtbindings_gui/src/qtscript_QStyleHintReturnMask.cpp

src/libs_3rdparty/qtbindings_gui/src/qtscript_QStyleHintReturnVariant.cpp

src/libs_3rdparty/qtbindings_gui/src/qtscript_QStyleOption.cpp

src/libs_3rdparty/qtbindings_gui/src/qtscript_QStyleOptionButton.cpp

src/libs_3rdparty/qtbindings_gui/src/qtscript_QStyleOptionComboBox.cpp

src/libs_3rdparty/qtbindings_gui/src/qtscript_QStyleOptionComplex.cpp

src/libs_3rdparty/qtbindings_gui/src/qtscript_QStyleOptionDockWidget.cpp

src/libs_3rdparty/qtbindings_gui/src/qtscript_QStyleOptionDockWidgetV2.cpp

src/libs_3rdparty/qtbindings_gui/src/qtscript_QStyleOptionFocusRect.cpp

src/libs_3rdparty/qtbindings_gui/src/qtscript_QStyleOptionFrame.cpp

src/libs_3rdparty/qtbindings_gui/src/qtscript_QStyleOptionFrameV2.cpp

src/libs_3rdparty/qtbindings_gui/src/qtscript_QStyleOptionGraphicsItem.cpp

src/libs_3rdparty/qtbindings_gui/src/qtscript_QStyleOptionGroupBox.cpp

src/libs_3rdparty/qtbindings_gui/src/qtscript_QStyleOptionHeader.cpp

src/libs_3rdparty/qtbindings_gui/src/qtscript_QStyleOptionMenuItem.cpp

src/libs_3rdparty/qtbindings_gui/src/qtscript_QStyleOptionProgressBar.cpp

src/libs_3rdparty/qtbindings_gui/src/qtscript_QStyleOptionProgressBarV2.cpp

src/libs_3rdparty/qtbindings_gui/src/qtscript_QStyleOptionRubberBand.cpp

src/libs_3rdparty/qtbindings_gui/src/qtscript_QStyleOptionSizeGrip.cpp

src/libs_3rdparty/qtbindings_gui/src/qtscript_QStyleOptionSlider.cpp

src/libs_3rdparty/qtbindings_gui/src/qtscript_QStyleOptionSpinBox.cpp

src/libs_3rdparty/qtbindings_gui/src/qtscript_QStyleOptionTab.cpp

src/libs_3rdparty/qtbindings_gui/src/qtscript_QStyleOptionTabBarBase.cpp

src/libs_3rdparty/qtbindings_gui/src/qtscript_QStyleOptionTabV2.cpp

src/libs_3rdparty/qtbindings_gui/src/qtscript_QStyleOptionTabWidgetFrame.cpp

src/libs_3rdparty/qtbindings_gui/src/qtscript_QStyleOptionTitleBar.cpp

src/libs_3rdparty/qtbindings_gui/src/qtscript_QStyleOptionToolBar.cpp

src/libs_3rdparty/qtbindings_gui/src/qtscript_QStyleOptionToolBox.cpp

src/libs_3rdparty/qtbindings_gui/src/qtscript_QStyleOptionToolBoxV2.cpp

src/libs_3rdparty/qtbindings_gui/src/qtscript_QStyleOptionToolButton.cpp

src/libs_3rdparty/qtbindings_gui/src/qtscript_QStyleOptionViewItem.cpp

src/libs_3rdparty/qtbindings_gui/src/qtscript_QStyleOptionViewItemV2.cpp

src/libs_3rdparty/qtbindings_gui/src/qtscript_QStyleOptionViewItemV3.cpp

src/libs_3rdparty/qtbindings_gui/src/qtscript_QStyleOptionViewItemV4.cpp

src/libs_3rdparty/qtbindings_gui/src/qtscript_QStylePainter.cpp

src/libs_3rdparty/qtbindings_gui/src/qtscript_QStylePlugin.cpp

src/libs_3rdparty/qtbindings_gui/src/qtscript_QStyledItemDelegate.cpp

src/libs_3rdparty/qtbindings_gui/src/qtscript_QSyntaxHighlighter.cpp

src/libs_3rdparty/qtbindings_gui/src/qtscript_QSystemTrayIcon.cpp

src/libs_3rdparty/qtbindings_gui/src/qtscript_QTabBar.cpp

src/libs_3rdparty/qtbindings_gui/src/qtscript_QTabWidget.cpp

src/libs_3rdparty/qtbindings_gui/src/qtscript_QTableView.cpp

src/libs_3rdparty/qtbindings_gui/src/qtscript_QTableWidget.cpp

src/libs_3rdparty/qtbindings_gui/src/qtscript_QTableWidgetItem.cpp

src/libs_3rdparty/qtbindings_gui/src/qtscript_QTableWidgetSelectionRange.cpp

src/libs_3rdparty/qtbindings_gui/src/qtscript_QTabletEvent.cpp

src/libs_3rdparty/qtbindings_gui/src/qtscript_QTextBlock.cpp

src/libs_3rdparty/qtbindings_gui/src/qtscript_QTextBlockFormat.cpp

src/libs_3rdparty/qtbindings_gui/src/qtscript_QTextBlockGroup.cpp

src/libs_3rdparty/qtbindings_gui/src/qtscript_QTextBlockUserData.cpp

src/libs_3rdparty/qtbindings_gui/src/qtscript_QTextBrowser.cpp

src/libs_3rdparty/qtbindings_gui/src/qtscript_QTextCharFormat.cpp

src/libs_3rdparty/qtbindings_gui/src/qtscript_QTextCodecPlugin.cpp

src/libs_3rdparty/qtbindings_gui/src/qtscript_QTextCursor.cpp

src/libs_3rdparty/qtbindings_gui/src/qtscript_QTextDocument.cpp

src/libs_3rdparty/qtbindings_gui/src/qtscript_QTextDocumentFragment.cpp

src/libs_3rdparty/qtbindings_gui/src/qtscript_QTextEdit.cpp

src/libs_3rdparty/qtbindings_gui/src/qtscript_QTextFormat.cpp

src/libs_3rdparty/qtbindings_gui/src/qtscript_QTextFragment.cpp

src/libs_3rdparty/qtbindings_gui/src/qtscript_QTextFrame.cpp

src/libs_3rdparty/qtbindings_gui/src/qtscript_QTextFrameFormat.cpp

src/libs_3rdparty/qtbindings_gui/src/qtscript_QTextImageFormat.cpp

src/libs_3rdparty/qtbindings_gui/src/qtscript_QTextInlineObject.cpp

src/libs_3rdparty/qtbindings_gui/src/qtscript_QTextItem.cpp

src/libs_3rdparty/qtbindings_gui/src/qtscript_QTextLayout.cpp

src/libs_3rdparty/qtbindings_gui/src/qtscript_QTextLength.cpp

src/libs_3rdparty/qtbindings_gui/src/qtscript_QTextLine.cpp

src/libs_3rdparty/qtbindings_gui/src/qtscript_QTextList.cpp

src/libs_3rdparty/qtbindings_gui/src/qtscript_QTextListFormat.cpp

src/libs_3rdparty/qtbindings_gui/src/qtscript_QTextObject.cpp

src/libs_3rdparty/qtbindings_gui/src/qtscript_QTextObjectInterface.cpp

src/libs_3rdparty/qtbindings_gui/src/qtscript_QTextTable.cpp

src/libs_3rdparty/qtbindings_gui/src/qtscript_QTextTableCell.cpp

src/libs_3rdparty/qtbindings_gui/src/qtscript_QTextTableCellFormat.cpp

src/libs_3rdparty/qtbindings_gui/src/qtscript_QTextTableFormat.cpp

src/libs_3rdparty/qtbindings_gui/src/qtscript_QTimeEdit.cpp

src/libs_3rdparty/qtbindings_gui/src/qtscript_QToolBar.cpp

src/libs_3rdparty/qtbindings_gui/src/qtscript_QToolBarChangeEvent.cpp

src/libs_3rdparty/qtbindings_gui/src/qtscript_QToolBox.cpp

src/libs_3rdparty/qtbindings_gui/src/qtscript_QToolButton.cpp

src/libs_3rdparty/qtbindings_gui/src/qtscript_QToolTip.cpp

src/libs_3rdparty/qtbindings_gui/src/qtscript_QTransform.cpp

src/libs_3rdparty/qtbindings_gui/src/qtscript_QTreeView.cpp

src/libs_3rdparty/qtbindings_gui/src/qtscript_QTreeWidget.cpp

src/libs_3rdparty/qtbindings_gui/src/qtscript_QTreeWidgetItem.cpp

src/libs_3rdparty/qtbindings_gui/src/qtscript_QUndoCommand.cpp

src/libs_3rdparty/qtbindings_gui/src/qtscript_QUndoGroup.cpp

src/libs_3rdparty/qtbindings_gui/src/qtscript_QUndoStack.cpp

src/libs_3rdparty/qtbindings_gui/src/qtscript_QUndoView.cpp

src/libs_3rdparty/qtbindings_gui/src/qtscript_QVBoxLayout.cpp

src/libs_3rdparty/qtbindings_gui/src/qtscript_QValidator.cpp

src/libs_3rdparty/qtbindings_gui/src/qtscript_QWhatsThis.cpp

src/libs_3rdparty/qtbindings_gui/src/qtscript_QWhatsThisClickedEvent.cpp

src/libs_3rdparty/qtbindings_gui/src/qtscript_QWheelEvent.cpp

src/libs_3rdparty/qtbindings_gui/src/qtscript_QWidget.cpp

src/libs_3rdparty/qtbindings_gui/src/qtscript_QWidgetAction.cpp

src/libs_3rdparty/qtbindings_gui/src/qtscript_QWidgetItem.cpp

src/libs_3rdparty/qtbindings_gui/src/qtscript_QWindowStateChangeEvent.cpp

src/libs_3rdparty/qtbindings_gui/src/qtscript_QWindowsStyle.cpp

src/libs_3rdparty/qtbindings_gui/src/qtscript_QWizard.cpp

src/libs_3rdparty/qtbindings_gui/src/qtscript_QWizardPage.cpp

src/libs_3rdparty/qtbindings_gui/src/qtscript_QWorkspace.cpp

src/libs_3rdparty/qtbindings_gui/src/qtscriptshell_QAbstractButton.cpp

src/libs_3rdparty/qtbindings_gui/src/qtscriptshell_QAbstractButton.h

src/libs_3rdparty/qtbindings_gui/src/qtscriptshell_QAbstractGraphicsShapeItem.cpp

src/libs_3rdparty/qtbindings_gui/src/qtscriptshell_QAbstractGraphicsShapeItem.h

src/libs_3rdparty/qtbindings_gui/src/qtscriptshell_QAbstractItemDelegate.cpp

src/libs_3rdparty/qtbindings_gui/src/qtscriptshell_QAbstractItemDelegate.h

src/libs_3rdparty/qtbindings_gui/src/qtscriptshell_QAbstractItemView.cpp

src/libs_3rdparty/qtbindings_gui/src/qtscriptshell_QAbstractItemView.h

src/libs_3rdparty/qtbindings_gui/src/qtscriptshell_QAbstractPageSetupDialog.cpp

src/libs_3rdparty/qtbindings_gui/src/qtscriptshell_QAbstractPageSetupDialog.h

src/libs_3rdparty/qtbindings_gui/src/qtscriptshell_QAbstractPrintDialog.cpp

src/libs_3rdparty/qtbindings_gui/src/qtscriptshell_QAbstractPrintDialog.h

src/libs_3rdparty/qtbindings_gui/src/qtscriptshell_QAbstractScrollArea.cpp

src/libs_3rdparty/qtbindings_gui/src/qtscriptshell_QAbstractScrollArea.h

src/libs_3rdparty/qtbindings_gui/src/qtscriptshell_QAbstractSlider.cpp

src/libs_3rdparty/qtbindings_gui/src/qtscriptshell_QAbstractSlider.h

src/libs_3rdparty/qtbindings_gui/src/qtscriptshell_QAbstractSpinBox.cpp

src/libs_3rdparty/qtbindings_gui/src/qtscriptshell_QAbstractSpinBox.h

src/libs_3rdparty/qtbindings_gui/src/qtscriptshell_QAccessible.cpp

src/libs_3rdparty/qtbindings_gui/src/qtscriptshell_QAccessible.h

src/libs_3rdparty/qtbindings_gui/src/qtscriptshell_QAccessible2Interface.cpp

src/libs_3rdparty/qtbindings_gui/src/qtscriptshell_QAccessible2Interface.h

src/libs_3rdparty/qtbindings_gui/src/qtscriptshell_QAccessibleBridge.cpp

src/libs_3rdparty/qtbindings_gui/src/qtscriptshell_QAccessibleBridge.h

src/libs_3rdparty/qtbindings_gui/src/qtscriptshell_QAccessibleInterface.cpp

src/libs_3rdparty/qtbindings_gui/src/qtscriptshell_QAccessibleInterface.h

src/libs_3rdparty/qtbindings_gui/src/qtscriptshell_QAccessibleInterfaceEx.cpp

src/libs_3rdparty/qtbindings_gui/src/qtscriptshell_QAccessibleInterfaceEx.h

src/libs_3rdparty/qtbindings_gui/src/qtscriptshell_QAccessibleObject.cpp

src/libs_3rdparty/qtbindings_gui/src/qtscriptshell_QAccessibleObject.h

src/libs_3rdparty/qtbindings_gui/src/qtscriptshell_QAccessibleObjectEx.cpp

src/libs_3rdparty/qtbindings_gui/src/qtscriptshell_QAccessibleObjectEx.h

src/libs_3rdparty/qtbindings_gui/src/qtscriptshell_QAccessiblePlugin.cpp

src/libs_3rdparty/qtbindings_gui/src/qtscriptshell_QAccessiblePlugin.h

src/libs_3rdparty/qtbindings_gui/src/qtscriptshell_QAccessibleTableInterface.cpp

src/libs_3rdparty/qtbindings_gui/src/qtscriptshell_QAccessibleTableInterface.h

src/libs_3rdparty/qtbindings_gui/src/qtscriptshell_QAccessibleWidget.cpp

src/libs_3rdparty/qtbindings_gui/src/qtscriptshell_QAccessibleWidget.h

src/libs_3rdparty/qtbindings_gui/src/qtscriptshell_QAccessibleWidgetEx.cpp

src/libs_3rdparty/qtbindings_gui/src/qtscriptshell_QAccessibleWidgetEx.h

src/libs_3rdparty/qtbindings_gui/src/qtscriptshell_QAction.cpp

src/libs_3rdparty/qtbindings_gui/src/qtscriptshell_QAction.h

src/libs_3rdparty/qtbindings_gui/src/qtscriptshell_QActionGroup.cpp

src/libs_3rdparty/qtbindings_gui/src/qtscriptshell_QActionGroup.h

src/libs_3rdparty/qtbindings_gui/src/qtscriptshell_QApplication.cpp

src/libs_3rdparty/qtbindings_gui/src/qtscriptshell_QApplication.h

src/libs_3rdparty/qtbindings_gui/src/qtscriptshell_QBitmap.cpp

src/libs_3rdparty/qtbindings_gui/src/qtscriptshell_QBitmap.h

src/libs_3rdparty/qtbindings_gui/src/qtscriptshell_QBoxLayout.cpp

src/libs_3rdparty/qtbindings_gui/src/qtscriptshell_QBoxLayout.h

src/libs_3rdparty/qtbindings_gui/src/qtscriptshell_QButtonGroup.cpp

src/libs_3rdparty/qtbindings_gui/src/qtscriptshell_QButtonGroup.h

src/libs_3rdparty/qtbindings_gui/src/qtscriptshell_QCDEStyle.cpp

src/libs_3rdparty/qtbindings_gui/src/qtscriptshell_QCDEStyle.h

src/libs_3rdparty/qtbindings_gui/src/qtscriptshell_QCalendarWidget.cpp

src/libs_3rdparty/qtbindings_gui/src/qtscriptshell_QCalendarWidget.h

src/libs_3rdparty/qtbindings_gui/src/qtscriptshell_QCheckBox.cpp

src/libs_3rdparty/qtbindings_gui/src/qtscriptshell_QCheckBox.h

src/libs_3rdparty/qtbindings_gui/src/qtscriptshell_QCleanlooksStyle.cpp

src/libs_3rdparty/qtbindings_gui/src/qtscriptshell_QCleanlooksStyle.h

src/libs_3rdparty/qtbindings_gui/src/qtscriptshell_QColumnView.cpp

src/libs_3rdparty/qtbindings_gui/src/qtscriptshell_QColumnView.h

src/libs_3rdparty/qtbindings_gui/src/qtscriptshell_QComboBox.cpp

src/libs_3rdparty/qtbindings_gui/src/qtscriptshell_QComboBox.h

src/libs_3rdparty/qtbindings_gui/src/qtscriptshell_QCommandLinkButton.cpp

src/libs_3rdparty/qtbindings_gui/src/qtscriptshell_QCommandLinkButton.h

src/libs_3rdparty/qtbindings_gui/src/qtscriptshell_QCommonStyle.cpp

src/libs_3rdparty/qtbindings_gui/src/qtscriptshell_QCommonStyle.h

src/libs_3rdparty/qtbindings_gui/src/qtscriptshell_QCompleter.cpp

src/libs_3rdparty/qtbindings_gui/src/qtscriptshell_QCompleter.h

src/libs_3rdparty/qtbindings_gui/src/qtscriptshell_QContextMenuEvent.cpp

src/libs_3rdparty/qtbindings_gui/src/qtscriptshell_QContextMenuEvent.h

src/libs_3rdparty/qtbindings_gui/src/qtscriptshell_QDataWidgetMapper.cpp

src/libs_3rdparty/qtbindings_gui/src/qtscriptshell_QDataWidgetMapper.h

src/libs_3rdparty/qtbindings_gui/src/qtscriptshell_QDateEdit.cpp

src/libs_3rdparty/qtbindings_gui/src/qtscriptshell_QDateEdit.h

src/libs_3rdparty/qtbindings_gui/src/qtscriptshell_QDateTimeEdit.cpp

src/libs_3rdparty/qtbindings_gui/src/qtscriptshell_QDateTimeEdit.h

src/libs_3rdparty/qtbindings_gui/src/qtscriptshell_QDesktopServices.cpp

src/libs_3rdparty/qtbindings_gui/src/qtscriptshell_QDesktopServices.h

src/libs_3rdparty/qtbindings_gui/src/qtscriptshell_QDesktopWidget.cpp

src/libs_3rdparty/qtbindings_gui/src/qtscriptshell_QDesktopWidget.h

src/libs_3rdparty/qtbindings_gui/src/qtscriptshell_QDial.cpp

src/libs_3rdparty/qtbindings_gui/src/qtscriptshell_QDial.h

src/libs_3rdparty/qtbindings_gui/src/qtscriptshell_QDialog.cpp

src/libs_3rdparty/qtbindings_gui/src/qtscriptshell_QDialog.h

src/libs_3rdparty/qtbindings_gui/src/qtscriptshell_QDialogButtonBox.cpp

src/libs_3rdparty/qtbindings_gui/src/qtscriptshell_QDialogButtonBox.h

src/libs_3rdparty/qtbindings_gui/src/qtscriptshell_QDockWidget.cpp

src/libs_3rdparty/qtbindings_gui/src/qtscriptshell_QDockWidget.h

src/libs_3rdparty/qtbindings_gui/src/qtscriptshell_QDoubleSpinBox.cpp

src/libs_3rdparty/qtbindings_gui/src/qtscriptshell_QDoubleSpinBox.h

src/libs_3rdparty/qtbindings_gui/src/qtscriptshell_QDoubleValidator.cpp

src/libs_3rdparty/qtbindings_gui/src/qtscriptshell_QDoubleValidator.h

src/libs_3rdparty/qtbindings_gui/src/qtscriptshell_QDragMoveEvent.cpp

src/libs_3rdparty/qtbindings_gui/src/qtscriptshell_QDragMoveEvent.h

src/libs_3rdparty/qtbindings_gui/src/qtscriptshell_QDragResponseEvent.cpp

src/libs_3rdparty/qtbindings_gui/src/qtscriptshell_QDragResponseEvent.h

src/libs_3rdparty/qtbindings_gui/src/qtscriptshell_QErrorMessage.cpp

src/libs_3rdparty/qtbindings_gui/src/qtscriptshell_QErrorMessage.h

src/libs_3rdparty/qtbindings_gui/src/qtscriptshell_QFileDialog.cpp

src/libs_3rdparty/qtbindings_gui/src/qtscriptshell_QFileDialog.h

src/libs_3rdparty/qtbindings_gui/src/qtscriptshell_QFileIconProvider.cpp

src/libs_3rdparty/qtbindings_gui/src/qtscriptshell_QFileIconProvider.h

src/libs_3rdparty/qtbindings_gui/src/qtscriptshell_QFocusFrame.cpp

src/libs_3rdparty/qtbindings_gui/src/qtscriptshell_QFocusFrame.h

src/libs_3rdparty/qtbindings_gui/src/qtscriptshell_QFontComboBox.cpp

src/libs_3rdparty/qtbindings_gui/src/qtscriptshell_QFontComboBox.h

src/libs_3rdparty/qtbindings_gui/src/qtscriptshell_QFormLayout.cpp

src/libs_3rdparty/qtbindings_gui/src/qtscriptshell_QFormLayout.h

src/libs_3rdparty/qtbindings_gui/src/qtscriptshell_QFrame.cpp

src/libs_3rdparty/qtbindings_gui/src/qtscriptshell_QFrame.h

src/libs_3rdparty/qtbindings_gui/src/qtscriptshell_QGraphicsEllipseItem.cpp

src/libs_3rdparty/qtbindings_gui/src/qtscriptshell_QGraphicsEllipseItem.h

src/libs_3rdparty/qtbindings_gui/src/qtscriptshell_QGraphicsGridLayout.cpp

src/libs_3rdparty/qtbindings_gui/src/qtscriptshell_QGraphicsGridLayout.h

src/libs_3rdparty/qtbindings_gui/src/qtscriptshell_QGraphicsItem.cpp

src/libs_3rdparty/qtbindings_gui/src/qtscriptshell_QGraphicsItem.h

src/libs_3rdparty/qtbindings_gui/src/qtscriptshell_QGraphicsItemAnimation.cpp

src/libs_3rdparty/qtbindings_gui/src/qtscriptshell_QGraphicsItemAnimation.h

src/libs_3rdparty/qtbindings_gui/src/qtscriptshell_QGraphicsItemGroup.cpp

src/libs_3rdparty/qtbindings_gui/src/qtscriptshell_QGraphicsItemGroup.h

src/libs_3rdparty/qtbindings_gui/src/qtscriptshell_QGraphicsLayout.cpp

src/libs_3rdparty/qtbindings_gui/src/qtscriptshell_QGraphicsLayout.h

src/libs_3rdparty/qtbindings_gui/src/qtscriptshell_QGraphicsLayoutItem.cpp

src/libs_3rdparty/qtbindings_gui/src/qtscriptshell_QGraphicsLayoutItem.h

src/libs_3rdparty/qtbindings_gui/src/qtscriptshell_QGraphicsLineItem.cpp

src/libs_3rdparty/qtbindings_gui/src/qtscriptshell_QGraphicsLineItem.h

src/libs_3rdparty/qtbindings_gui/src/qtscriptshell_QGraphicsLinearLayout.cpp

src/libs_3rdparty/qtbindings_gui/src/qtscriptshell_QGraphicsLinearLayout.h

src/libs_3rdparty/qtbindings_gui/src/qtscriptshell_QGraphicsPathItem.cpp

src/libs_3rdparty/qtbindings_gui/src/qtscriptshell_QGraphicsPathItem.h

src/libs_3rdparty/qtbindings_gui/src/qtscriptshell_QGraphicsPixmapItem.cpp

src/libs_3rdparty/qtbindings_gui/src/qtscriptshell_QGraphicsPixmapItem.h

src/libs_3rdparty/qtbindings_gui/src/qtscriptshell_QGraphicsPolygonItem.cpp

src/libs_3rdparty/qtbindings_gui/src/qtscriptshell_QGraphicsPolygonItem.h

src/libs_3rdparty/qtbindings_gui/src/qtscriptshell_QGraphicsProxyWidget.cpp

src/libs_3rdparty/qtbindings_gui/src/qtscriptshell_QGraphicsProxyWidget.h

src/libs_3rdparty/qtbindings_gui/src/qtscriptshell_QGraphicsRectItem.cpp

src/libs_3rdparty/qtbindings_gui/src/qtscriptshell_QGraphicsRectItem.h

src/libs_3rdparty/qtbindings_gui/src/qtscriptshell_QGraphicsScene.cpp

src/libs_3rdparty/qtbindings_gui/src/qtscriptshell_QGraphicsScene.h

src/libs_3rdparty/qtbindings_gui/src/qtscriptshell_QGraphicsSimpleTextItem.cpp

src/libs_3rdparty/qtbindings_gui/src/qtscriptshell_QGraphicsSimpleTextItem.h

src/libs_3rdparty/qtbindings_gui/src/qtscriptshell_QGraphicsTextItem.cpp

src/libs_3rdparty/qtbindings_gui/src/qtscriptshell_QGraphicsTextItem.h

src/libs_3rdparty/qtbindings_gui/src/qtscriptshell_QGraphicsView.cpp

src/libs_3rdparty/qtbindings_gui/src/qtscriptshell_QGraphicsView.h

src/libs_3rdparty/qtbindings_gui/src/qtscriptshell_QGraphicsWidget.cpp

src/libs_3rdparty/qtbindings_gui/src/qtscriptshell_QGraphicsWidget.h

src/libs_3rdparty/qtbindings_gui/src/qtscriptshell_QGridLayout.cpp

src/libs_3rdparty/qtbindings_gui/src/qtscriptshell_QGridLayout.h

src/libs_3rdparty/qtbindings_gui/src/qtscriptshell_QGroupBox.cpp

src/libs_3rdparty/qtbindings_gui/src/qtscriptshell_QGroupBox.h

src/libs_3rdparty/qtbindings_gui/src/qtscriptshell_QHBoxLayout.cpp

src/libs_3rdparty/qtbindings_gui/src/qtscriptshell_QHBoxLayout.h

src/libs_3rdparty/qtbindings_gui/src/qtscriptshell_QHeaderView.cpp

src/libs_3rdparty/qtbindings_gui/src/qtscriptshell_QHeaderView.h

src/libs_3rdparty/qtbindings_gui/src/qtscriptshell_QHoverEvent.cpp

src/libs_3rdparty/qtbindings_gui/src/qtscriptshell_QHoverEvent.h

src/libs_3rdparty/qtbindings_gui/src/qtscriptshell_QIconEngine.cpp

src/libs_3rdparty/qtbindings_gui/src/qtscriptshell_QIconEngine.h

src/libs_3rdparty/qtbindings_gui/src/qtscriptshell_QIconEnginePluginV2.cpp

src/libs_3rdparty/qtbindings_gui/src/qtscriptshell_QIconEnginePluginV2.h

src/libs_3rdparty/qtbindings_gui/src/qtscriptshell_QImage.cpp

src/libs_3rdparty/qtbindings_gui/src/qtscriptshell_QImage.h

src/libs_3rdparty/qtbindings_gui/src/qtscriptshell_QImageIOHandler.cpp

src/libs_3rdparty/qtbindings_gui/src/qtscriptshell_QImageIOHandler.h

src/libs_3rdparty/qtbindings_gui/src/qtscriptshell_QImageIOPlugin.cpp

src/libs_3rdparty/qtbindings_gui/src/qtscriptshell_QImageIOPlugin.h

src/libs_3rdparty/qtbindings_gui/src/qtscriptshell_QInputContext.cpp

src/libs_3rdparty/qtbindings_gui/src/qtscriptshell_QInputContext.h

src/libs_3rdparty/qtbindings_gui/src/qtscriptshell_QInputContextFactory.cpp

src/libs_3rdparty/qtbindings_gui/src/qtscriptshell_QInputContextFactory.h

src/libs_3rdparty/qtbindings_gui/src/qtscriptshell_QInputContextPlugin.cpp

src/libs_3rdparty/qtbindings_gui/src/qtscriptshell_QInputContextPlugin.h

src/libs_3rdparty/qtbindings_gui/src/qtscriptshell_QInputEvent.cpp

src/libs_3rdparty/qtbindings_gui/src/qtscriptshell_QInputEvent.h

src/libs_3rdparty/qtbindings_gui/src/qtscriptshell_QIntValidator.cpp

src/libs_3rdparty/qtbindings_gui/src/qtscriptshell_QIntValidator.h

src/libs_3rdparty/qtbindings_gui/src/qtscriptshell_QItemDelegate.cpp

src/libs_3rdparty/qtbindings_gui/src/qtscriptshell_QItemDelegate.h

src/libs_3rdparty/qtbindings_gui/src/qtscriptshell_QItemEditorCreatorBase.cpp

src/libs_3rdparty/qtbindings_gui/src/qtscriptshell_QItemEditorCreatorBase.h

src/libs_3rdparty/qtbindings_gui/src/qtscriptshell_QItemEditorFactory.cpp

src/libs_3rdparty/qtbindings_gui/src/qtscriptshell_QItemEditorFactory.h

src/libs_3rdparty/qtbindings_gui/src/qtscriptshell_QKeyEvent.cpp

src/libs_3rdparty/qtbindings_gui/src/qtscriptshell_QKeyEvent.h

src/libs_3rdparty/qtbindings_gui/src/qtscriptshell_QLCDNumber.cpp

src/libs_3rdparty/qtbindings_gui/src/qtscriptshell_QLCDNumber.h

src/libs_3rdparty/qtbindings_gui/src/qtscriptshell_QLabel.cpp

src/libs_3rdparty/qtbindings_gui/src/qtscriptshell_QLabel.h

src/libs_3rdparty/qtbindings_gui/src/qtscriptshell_QLayout.cpp

src/libs_3rdparty/qtbindings_gui/src/qtscriptshell_QLayout.h

src/libs_3rdparty/qtbindings_gui/src/qtscriptshell_QLayoutItem.cpp

src/libs_3rdparty/qtbindings_gui/src/qtscriptshell_QLayoutItem.h

src/libs_3rdparty/qtbindings_gui/src/qtscriptshell_QLineEdit.cpp

src/libs_3rdparty/qtbindings_gui/src/qtscriptshell_QLineEdit.h

src/libs_3rdparty/qtbindings_gui/src/qtscriptshell_QListView.cpp

src/libs_3rdparty/qtbindings_gui/src/qtscriptshell_QListView.h

src/libs_3rdparty/qtbindings_gui/src/qtscriptshell_QListWidget.cpp

src/libs_3rdparty/qtbindings_gui/src/qtscriptshell_QListWidget.h

src/libs_3rdparty/qtbindings_gui/src/qtscriptshell_QListWidgetItem.cpp

src/libs_3rdparty/qtbindings_gui/src/qtscriptshell_QListWidgetItem.h

src/libs_3rdparty/qtbindings_gui/src/qtscriptshell_QMainWindow.cpp

src/libs_3rdparty/qtbindings_gui/src/qtscriptshell_QMainWindow.h

src/libs_3rdparty/qtbindings_gui/src/qtscriptshell_QMdiArea.cpp

src/libs_3rdparty/qtbindings_gui/src/qtscriptshell_QMdiArea.h

src/libs_3rdparty/qtbindings_gui/src/qtscriptshell_QMdiSubWindow.cpp

src/libs_3rdparty/qtbindings_gui/src/qtscriptshell_QMdiSubWindow.h

src/libs_3rdparty/qtbindings_gui/src/qtscriptshell_QMenu.cpp

src/libs_3rdparty/qtbindings_gui/src/qtscriptshell_QMenu.h

src/libs_3rdparty/qtbindings_gui/src/qtscriptshell_QMenuBar.cpp

src/libs_3rdparty/qtbindings_gui/src/qtscriptshell_QMenuBar.h

src/libs_3rdparty/qtbindings_gui/src/qtscriptshell_QMessageBox.cpp

src/libs_3rdparty/qtbindings_gui/src/qtscriptshell_QMessageBox.h

src/libs_3rdparty/qtbindings_gui/src/qtscriptshell_QMotifStyle.cpp

src/libs_3rdparty/qtbindings_gui/src/qtscriptshell_QMotifStyle.h

src/libs_3rdparty/qtbindings_gui/src/qtscriptshell_QMouseEvent.cpp

src/libs_3rdparty/qtbindings_gui/src/qtscriptshell_QMouseEvent.h

src/libs_3rdparty/qtbindings_gui/src/qtscriptshell_QMoveEvent.cpp

src/libs_3rdparty/qtbindings_gui/src/qtscriptshell_QMoveEvent.h

src/libs_3rdparty/qtbindings_gui/src/qtscriptshell_QMovie.cpp

src/libs_3rdparty/qtbindings_gui/src/qtscriptshell_QMovie.h

src/libs_3rdparty/qtbindings_gui/src/qtscriptshell_QPageSetupDialog.cpp

src/libs_3rdparty/qtbindings_gui/src/qtscriptshell_QPageSetupDialog.h

src/libs_3rdparty/qtbindings_gui/src/qtscriptshell_QPaintDevice.cpp

src/libs_3rdparty/qtbindings_gui/src/qtscriptshell_QPaintDevice.h

src/libs_3rdparty/qtbindings_gui/src/qtscriptshell_QPaintEngine.cpp

src/libs_3rdparty/qtbindings_gui/src/qtscriptshell_QPaintEngine.h

src/libs_3rdparty/qtbindings_gui/src/qtscriptshell_QPaintEngineState.cpp

src/libs_3rdparty/qtbindings_gui/src/qtscriptshell_QPaintEngineState.h

src/libs_3rdparty/qtbindings_gui/src/qtscriptshell_QPaintEvent.cpp

src/libs_3rdparty/qtbindings_gui/src/qtscriptshell_QPaintEvent.h

src/libs_3rdparty/qtbindings_gui/src/qtscriptshell_QPicture.cpp

src/libs_3rdparty/qtbindings_gui/src/qtscriptshell_QPicture.h

src/libs_3rdparty/qtbindings_gui/src/qtscriptshell_QPictureFormatPlugin.cpp

src/libs_3rdparty/qtbindings_gui/src/qtscriptshell_QPictureFormatPlugin.h

src/libs_3rdparty/qtbindings_gui/src/qtscriptshell_QPixmap.cpp

src/libs_3rdparty/qtbindings_gui/src/qtscriptshell_QPixmap.h

src/libs_3rdparty/qtbindings_gui/src/qtscriptshell_QPixmapCache.cpp

src/libs_3rdparty/qtbindings_gui/src/qtscriptshell_QPixmapCache.h

src/libs_3rdparty/qtbindings_gui/src/qtscriptshell_QPlainTextDocumentLayout.cpp

src/libs_3rdparty/qtbindings_gui/src/qtscriptshell_QPlainTextDocumentLayout.h

src/libs_3rdparty/qtbindings_gui/src/qtscriptshell_QPlainTextEdit.cpp

src/libs_3rdparty/qtbindings_gui/src/qtscriptshell_QPlainTextEdit.h

src/libs_3rdparty/qtbindings_gui/src/qtscriptshell_QPlastiqueStyle.cpp

src/libs_3rdparty/qtbindings_gui/src/qtscriptshell_QPlastiqueStyle.h

src/libs_3rdparty/qtbindings_gui/src/qtscriptshell_QPrintDialog.cpp

src/libs_3rdparty/qtbindings_gui/src/qtscriptshell_QPrintDialog.h

src/libs_3rdparty/qtbindings_gui/src/qtscriptshell_QPrintEngine.cpp

src/libs_3rdparty/qtbindings_gui/src/qtscriptshell_QPrintEngine.h

src/libs_3rdparty/qtbindings_gui/src/qtscriptshell_QPrintPreviewDialog.cpp

src/libs_3rdparty/qtbindings_gui/src/qtscriptshell_QPrintPreviewDialog.h

src/libs_3rdparty/qtbindings_gui/src/qtscriptshell_QPrintPreviewWidget.cpp

src/libs_3rdparty/qtbindings_gui/src/qtscriptshell_QPrintPreviewWidget.h

src/libs_3rdparty/qtbindings_gui/src/qtscriptshell_QPrinter.cpp

src/libs_3rdparty/qtbindings_gui/src/qtscriptshell_QPrinter.h

src/libs_3rdparty/qtbindings_gui/src/qtscriptshell_QProgressBar.cpp

src/libs_3rdparty/qtbindings_gui/src/qtscriptshell_QProgressBar.h

src/libs_3rdparty/qtbindings_gui/src/qtscriptshell_QProgressDialog.cpp

src/libs_3rdparty/qtbindings_gui/src/qtscriptshell_QProgressDialog.h

src/libs_3rdparty/qtbindings_gui/src/qtscriptshell_QPushButton.cpp

src/libs_3rdparty/qtbindings_gui/src/qtscriptshell_QPushButton.h

src/libs_3rdparty/qtbindings_gui/src/qtscriptshell_QRadioButton.cpp

src/libs_3rdparty/qtbindings_gui/src/qtscriptshell_QRadioButton.h

src/libs_3rdparty/qtbindings_gui/src/qtscriptshell_QRegExpValidator.cpp

src/libs_3rdparty/qtbindings_gui/src/qtscriptshell_QRegExpValidator.h

src/libs_3rdparty/qtbindings_gui/src/qtscriptshell_QResizeEvent.cpp

src/libs_3rdparty/qtbindings_gui/src/qtscriptshell_QResizeEvent.h

src/libs_3rdparty/qtbindings_gui/src/qtscriptshell_QRubberBand.cpp

src/libs_3rdparty/qtbindings_gui/src/qtscriptshell_QRubberBand.h

src/libs_3rdparty/qtbindings_gui/src/qtscriptshell_QScrollArea.cpp

src/libs_3rdparty/qtbindings_gui/src/qtscriptshell_QScrollArea.h

src/libs_3rdparty/qtbindings_gui/src/qtscriptshell_QScrollBar.cpp

src/libs_3rdparty/qtbindings_gui/src/qtscriptshell_QScrollBar.h

src/libs_3rdparty/qtbindings_gui/src/qtscriptshell_QShortcut.cpp

src/libs_3rdparty/qtbindings_gui/src/qtscriptshell_QShortcut.h

src/libs_3rdparty/qtbindings_gui/src/qtscriptshell_QShortcutEvent.cpp

src/libs_3rdparty/qtbindings_gui/src/qtscriptshell_QShortcutEvent.h

src/libs_3rdparty/qtbindings_gui/src/qtscriptshell_QSizeGrip.cpp

src/libs_3rdparty/qtbindings_gui/src/qtscriptshell_QSizeGrip.h

src/libs_3rdparty/qtbindings_gui/src/qtscriptshell_QSlider.cpp

src/libs_3rdparty/qtbindings_gui/src/qtscriptshell_QSlider.h

src/libs_3rdparty/qtbindings_gui/src/qtscriptshell_QSound.cpp

src/libs_3rdparty/qtbindings_gui/src/qtscriptshell_QSound.h

src/libs_3rdparty/qtbindings_gui/src/qtscriptshell_QSpacerItem.cpp

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src/libs_3rdparty/qtbindings_gui/src/qtscriptshell_QSpinBox.cpp

src/libs_3rdparty/qtbindings_gui/src/qtscriptshell_QSpinBox.h

src/libs_3rdparty/qtbindings_gui/src/qtscriptshell_QSplashScreen.cpp

src/libs_3rdparty/qtbindings_gui/src/qtscriptshell_QSplashScreen.h

src/libs_3rdparty/qtbindings_gui/src/qtscriptshell_QSplitter.cpp

src/libs_3rdparty/qtbindings_gui/src/qtscriptshell_QSplitter.h

src/libs_3rdparty/qtbindings_gui/src/qtscriptshell_QSplitterHandle.cpp

src/libs_3rdparty/qtbindings_gui/src/qtscriptshell_QSplitterHandle.h

src/libs_3rdparty/qtbindings_gui/src/qtscriptshell_QStackedLayout.cpp

src/libs_3rdparty/qtbindings_gui/src/qtscriptshell_QStackedLayout.h

src/libs_3rdparty/qtbindings_gui/src/qtscriptshell_QStackedWidget.cpp

src/libs_3rdparty/qtbindings_gui/src/qtscriptshell_QStackedWidget.h

src/libs_3rdparty/qtbindings_gui/src/qtscriptshell_QStandardItem.cpp

src/libs_3rdparty/qtbindings_gui/src/qtscriptshell_QStandardItem.h

src/libs_3rdparty/qtbindings_gui/src/qtscriptshell_QStandardItemModel.cpp

src/libs_3rdparty/qtbindings_gui/src/qtscriptshell_QStandardItemModel.h

src/libs_3rdparty/qtbindings_gui/src/qtscriptshell_QStatusBar.cpp

src/libs_3rdparty/qtbindings_gui/src/qtscriptshell_QStatusBar.h

src/libs_3rdparty/qtbindings_gui/src/qtscriptshell_QStyle.cpp

src/libs_3rdparty/qtbindings_gui/src/qtscriptshell_QStyle.h

src/libs_3rdparty/qtbindings_gui/src/qtscriptshell_QStyleFactory.cpp

src/libs_3rdparty/qtbindings_gui/src/qtscriptshell_QStyleFactory.h

src/libs_3rdparty/qtbindings_gui/src/qtscriptshell_QStyleHintReturn.cpp

src/libs_3rdparty/qtbindings_gui/src/qtscriptshell_QStyleHintReturn.h

src/libs_3rdparty/qtbindings_gui/src/qtscriptshell_QStyleHintReturnMask.cpp

src/libs_3rdparty/qtbindings_gui/src/qtscriptshell_QStyleHintReturnMask.h

src/libs_3rdparty/qtbindings_gui/src/qtscriptshell_QStyleHintReturnVariant.cpp

src/libs_3rdparty/qtbindings_gui/src/qtscriptshell_QStyleHintReturnVariant.h

src/libs_3rdparty/qtbindings_gui/src/qtscriptshell_QStyleOption.cpp

src/libs_3rdparty/qtbindings_gui/src/qtscriptshell_QStyleOption.h

src/libs_3rdparty/qtbindings_gui/src/qtscriptshell_QStyleOptionButton.cpp

src/libs_3rdparty/qtbindings_gui/src/qtscriptshell_QStyleOptionButton.h

src/libs_3rdparty/qtbindings_gui/src/qtscriptshell_QStyleOptionComboBox.cpp

src/libs_3rdparty/qtbindings_gui/src/qtscriptshell_QStyleOptionComboBox.h

src/libs_3rdparty/qtbindings_gui/src/qtscriptshell_QStyleOptionComplex.cpp

src/libs_3rdparty/qtbindings_gui/src/qtscriptshell_QStyleOptionComplex.h

src/libs_3rdparty/qtbindings_gui/src/qtscriptshell_QStyleOptionDockWidget.cpp

src/libs_3rdparty/qtbindings_gui/src/qtscriptshell_QStyleOptionDockWidget.h

src/libs_3rdparty/qtbindings_gui/src/qtscriptshell_QStyleOptionDockWidgetV2.cpp

src/libs_3rdparty/qtbindings_gui/src/qtscriptshell_QStyleOptionDockWidgetV2.h

src/libs_3rdparty/qtbindings_gui/src/qtscriptshell_QStyleOptionFocusRect.cpp

src/libs_3rdparty/qtbindings_gui/src/qtscriptshell_QStyleOptionFocusRect.h

src/libs_3rdparty/qtbindings_gui/src/qtscriptshell_QStyleOptionFrame.cpp

src/libs_3rdparty/qtbindings_gui/src/qtscriptshell_QStyleOptionFrame.h

src/libs_3rdparty/qtbindings_gui/src/qtscriptshell_QStyleOptionFrameV2.cpp

src/libs_3rdparty/qtbindings_gui/src/qtscriptshell_QStyleOptionFrameV2.h

src/libs_3rdparty/qtbindings_gui/src/qtscriptshell_QStyleOptionGraphicsItem.cpp

src/libs_3rdparty/qtbindings_gui/src/qtscriptshell_QStyleOptionGraphicsItem.h

src/libs_3rdparty/qtbindings_gui/src/qtscriptshell_QStyleOptionGroupBox.cpp

src/libs_3rdparty/qtbindings_gui/src/qtscriptshell_QStyleOptionGroupBox.h

src/libs_3rdparty/qtbindings_gui/src/qtscriptshell_QStyleOptionHeader.cpp

src/libs_3rdparty/qtbindings_gui/src/qtscriptshell_QStyleOptionHeader.h

src/libs_3rdparty/qtbindings_gui/src/qtscriptshell_QStyleOptionMenuItem.cpp

src/libs_3rdparty/qtbindings_gui/src/qtscriptshell_QStyleOptionMenuItem.h

src/libs_3rdparty/qtbindings_gui/src/qtscriptshell_QStyleOptionProgressBar.cpp

src/libs_3rdparty/qtbindings_gui/src/qtscriptshell_QStyleOptionProgressBar.h

src/libs_3rdparty/qtbindings_gui/src/qtscriptshell_QStyleOptionProgressBarV2.cpp

src/libs_3rdparty/qtbindings_gui/src/qtscriptshell_QStyleOptionProgressBarV2.h

src/libs_3rdparty/qtbindings_gui/src/qtscriptshell_QStyleOptionRubberBand.cpp

src/libs_3rdparty/qtbindings_gui/src/qtscriptshell_QStyleOptionRubberBand.h

src/libs_3rdparty/qtbindings_gui/src/qtscriptshell_QStyleOptionSizeGrip.cpp

src/libs_3rdparty/qtbindings_gui/src/qtscriptshell_QStyleOptionSizeGrip.h

src/libs_3rdparty/qtbindings_gui/src/qtscriptshell_QStyleOptionSlider.cpp

src/libs_3rdparty/qtbindings_gui/src/qtscriptshell_QStyleOptionSlider.h

src/libs_3rdparty/qtbindings_gui/src/qtscriptshell_QStyleOptionSpinBox.cpp

src/libs_3rdparty/qtbindings_gui/src/qtscriptshell_QStyleOptionSpinBox.h

src/libs_3rdparty/qtbindings_gui/src/qtscriptshell_QStyleOptionTab.cpp

src/libs_3rdparty/qtbindings_gui/src/qtscriptshell_QStyleOptionTab.h

src/libs_3rdparty/qtbindings_gui/src/qtscriptshell_QStyleOptionTabBarBase.cpp

src/libs_3rdparty/qtbindings_gui/src/qtscriptshell_QStyleOptionTabBarBase.h

src/libs_3rdparty/qtbindings_gui/src/qtscriptshell_QStyleOptionTabV2.cpp

src/libs_3rdparty/qtbindings_gui/src/qtscriptshell_QStyleOptionTabV2.h

src/libs_3rdparty/qtbindings_gui/src/qtscriptshell_QStyleOptionTabWidgetFrame.cpp

src/libs_3rdparty/qtbindings_gui/src/qtscriptshell_QStyleOptionTabWidgetFrame.h

src/libs_3rdparty/qtbindings_gui/src/qtscriptshell_QStyleOptionTitleBar.cpp

src/libs_3rdparty/qtbindings_gui/src/qtscriptshell_QStyleOptionTitleBar.h

src/libs_3rdparty/qtbindings_gui/src/qtscriptshell_QStyleOptionToolBar.cpp

src/libs_3rdparty/qtbindings_gui/src/qtscriptshell_QStyleOptionToolBar.h

src/libs_3rdparty/qtbindings_gui/src/qtscriptshell_QStyleOptionToolBox.cpp

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src/libs_3rdparty/qtbindings_gui/src/qtscriptshell_QStyleOptionToolButton.cpp

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src/libs_3rdparty/qtbindings_gui/src/qtscriptshell_QStyleOptionViewItemV2.cpp

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src/libs_3rdparty/qtbindings_gui/src/qtscriptshell_QStyleOptionViewItemV3.cpp

src/libs_3rdparty/qtbindings_gui/src/qtscriptshell_QStyleOptionViewItemV3.h

src/libs_3rdparty/qtbindings_gui/src/qtscriptshell_QStyleOptionViewItemV4.cpp

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src/libs_3rdparty/qtbindings_gui/src/qtscriptshell_QStylePlugin.cpp

src/libs_3rdparty/qtbindings_gui/src/qtscriptshell_QStylePlugin.h

src/libs_3rdparty/qtbindings_gui/src/qtscriptshell_QStyledItemDelegate.cpp

src/libs_3rdparty/qtbindings_gui/src/qtscriptshell_QStyledItemDelegate.h

src/libs_3rdparty/qtbindings_gui/src/qtscriptshell_QSyntaxHighlighter.cpp

src/libs_3rdparty/qtbindings_gui/src/qtscriptshell_QSyntaxHighlighter.h

src/libs_3rdparty/qtbindings_gui/src/qtscriptshell_QSystemTrayIcon.cpp

src/libs_3rdparty/qtbindings_gui/src/qtscriptshell_QSystemTrayIcon.h

src/libs_3rdparty/qtbindings_gui/src/qtscriptshell_QTabBar.cpp

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src/libs_3rdparty/qtbindings_gui/src/qtscriptshell_QTabWidget.cpp

src/libs_3rdparty/qtbindings_gui/src/qtscriptshell_QTabWidget.h

src/libs_3rdparty/qtbindings_gui/src/qtscriptshell_QTableView.cpp

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src/libs_3rdparty/qtbindings_gui/src/qtscriptshell_QTableWidget.cpp

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src/libs_3rdparty/qtbindings_gui/src/qtscriptshell_QTextBlockGroup.h

src/libs_3rdparty/qtbindings_gui/src/qtscriptshell_QTextBlockUserData.cpp

src/libs_3rdparty/qtbindings_gui/src/qtscriptshell_QTextBlockUserData.h

src/libs_3rdparty/qtbindings_gui/src/qtscriptshell_QTextBrowser.cpp

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src/libs_3rdparty/qtbindings_gui/src/qtscriptshell_QTextCharFormat.cpp

src/libs_3rdparty/qtbindings_gui/src/qtscriptshell_QTextCharFormat.h

src/libs_3rdparty/qtbindings_gui/src/qtscriptshell_QTextCodecPlugin.cpp

src/libs_3rdparty/qtbindings_gui/src/qtscriptshell_QTextCodecPlugin.h

src/libs_3rdparty/qtbindings_gui/src/qtscriptshell_QTextDocument.cpp

src/libs_3rdparty/qtbindings_gui/src/qtscriptshell_QTextDocument.h

src/libs_3rdparty/qtbindings_gui/src/qtscriptshell_QTextEdit.cpp

src/libs_3rdparty/qtbindings_gui/src/qtscriptshell_QTextEdit.h

src/libs_3rdparty/qtbindings_gui/src/qtscriptshell_QTextFrame.cpp

src/libs_3rdparty/qtbindings_gui/src/qtscriptshell_QTextFrame.h

src/libs_3rdparty/qtbindings_gui/src/qtscriptshell_QTextFrameFormat.cpp

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src/libs_3rdparty/qtbindings_gui/src/qtscriptshell_QTextImageFormat.cpp

src/libs_3rdparty/qtbindings_gui/src/qtscriptshell_QTextImageFormat.h

src/libs_3rdparty/qtbindings_gui/src/qtscriptshell_QTextItem.cpp

src/libs_3rdparty/qtbindings_gui/src/qtscriptshell_QTextItem.h

src/libs_3rdparty/qtbindings_gui/src/qtscriptshell_QTextList.cpp

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src/libs_3rdparty/qtbindings_gui/src/qtscriptshell_QTextListFormat.cpp

src/libs_3rdparty/qtbindings_gui/src/qtscriptshell_QTextListFormat.h

src/libs_3rdparty/qtbindings_gui/src/qtscriptshell_QTextObject.cpp

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src/libs_3rdparty/qtbindings_gui/src/qtscriptshell_QTextObjectInterface.cpp

src/libs_3rdparty/qtbindings_gui/src/qtscriptshell_QTextObjectInterface.h

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src/libs_3rdparty/qtbindings_gui/src/qtscriptshell_QTextTableCellFormat.cpp

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src/libs_3rdparty/qtbindings_gui/src/qtscriptshell_QTextTableFormat.cpp

src/libs_3rdparty/qtbindings_gui/src/qtscriptshell_QTextTableFormat.h

src/libs_3rdparty/qtbindings_gui/src/qtscriptshell_QTimeEdit.cpp

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src/libs_3rdparty/qtbindings_gui/src/qtscriptshell_QToolBar.cpp

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src/libs_3rdparty/qtbindings_gui/src/qtscriptshell_QToolBox.cpp

src/libs_3rdparty/qtbindings_gui/src/qtscriptshell_QToolBox.h

src/libs_3rdparty/qtbindings_gui/src/qtscriptshell_QToolButton.cpp

src/libs_3rdparty/qtbindings_gui/src/qtscriptshell_QToolButton.h

src/libs_3rdparty/qtbindings_gui/src/qtscriptshell_QTreeView.cpp

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src/libs_3rdparty/qtbindings_gui/src/qtscriptshell_QTreeWidget.cpp

src/libs_3rdparty/qtbindings_gui/src/qtscriptshell_QTreeWidget.h

src/libs_3rdparty/qtbindings_gui/src/qtscriptshell_QTreeWidgetItem.cpp

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src/ugene/src/task_scheduler/TaskSchedulerImpl.h

src/ugene/src/task_view

src/ugene/src/task_view/TaskStatusBar.cpp

src/ugene/src/task_view/TaskStatusBar.h

src/ugene/src/task_view/TaskViewController.cpp

src/ugene/src/task_view/TaskViewController.h

src/ugene/transl

src/ugene/transl/english.ts

src/ugene/transl/russian.ts

src/ugene/ugene.pri

src/ugene/ugene.pro

src/ugene/ugene.qrc

src/ugene/ugene.rc

files modified:
COPYRIGHT

build.txt

data/DBXRefRegistry.txt

data/translations.txt

debian/changelog

debian/control

debian/copyright

debian/rules

installer/_common_data/ugene.1.gz

installer/_common_data/ugene.desktop

src/gen_bin_script.cmd

src/libs_3rdparty/zlib/src/adler32.c

src/libs_3rdparty/zlib/src/compress.c

src/libs_3rdparty/zlib/src/crc32.c

src/libs_3rdparty/zlib/src/crc32.h

src/libs_3rdparty/zlib/src/deflate.c

src/libs_3rdparty/zlib/src/deflate.h

src/libs_3rdparty/zlib/src/gzio.c

src/libs_3rdparty/zlib/src/infback.c

src/libs_3rdparty/zlib/src/inffast.c

src/libs_3rdparty/zlib/src/inffast.h

src/libs_3rdparty/zlib/src/inffixed.h

src/libs_3rdparty/zlib/src/inflate.c

src/libs_3rdparty/zlib/src/inflate.h

src/libs_3rdparty/zlib/src/inftrees.c

src/libs_3rdparty/zlib/src/inftrees.h

src/libs_3rdparty/zlib/src/minigzip.c

src/libs_3rdparty/zlib/src/trees.c

src/libs_3rdparty/zlib/src/trees.h

src/libs_3rdparty/zlib/src/uncompr.c

src/libs_3rdparty/zlib/src/zconf.h

src/libs_3rdparty/zlib/src/zlib.h

src/libs_3rdparty/zlib/src/zutil.c

src/libs_3rdparty/zlib/src/zutil.h

src/libs_3rdparty/zlib/zlib.pri

src/libs_3rdparty/zlib/zlib.pro

src/plugins/annotator/annotator.pri

src/plugins/annotator/annotator.pro

src/plugins/annotator/src/AnnotatorPlugin.cpp

src/plugins/annotator/src/AnnotatorPlugin.h

src/plugins/annotator/src/AnnotatorTests.cpp

src/plugins/annotator/src/AnnotatorTests.h

src/plugins/annotator/src/CollocationWorker.cpp

src/plugins/annotator/src/CollocationWorker.h

src/plugins/annotator/src/CollocationsDialogController.cpp

src/plugins/annotator/src/CollocationsDialogController.h

src/plugins/annotator/src/CollocationsSearchAlgorithm.cpp

src/plugins/annotator/src/CollocationsSearchAlgorithm.h

src/plugins/annotator/transl/english.ts

src/plugins/annotator/transl/russian.ts

src/plugins/biostruct3d_view/biostruct3d_view.pri

src/plugins/biostruct3d_view/biostruct3d_view.pro

src/plugins/biostruct3d_view/biostruct3d_view.qrc

src/plugins/biostruct3d_view/src/BallAndStickGLRenderer.cpp

src/plugins/biostruct3d_view/src/BallAndStickGLRenderer.h

src/plugins/biostruct3d_view/src/BioStruct3DColorScheme.cpp

src/plugins/biostruct3d_view/src/BioStruct3DColorScheme.h

src/plugins/biostruct3d_view/src/BioStruct3DGLRender.cpp

src/plugins/biostruct3d_view/src/BioStruct3DGLRender.h

src/plugins/biostruct3d_view/src/BioStruct3DGLWidget.cpp

src/plugins/biostruct3d_view/src/BioStruct3DGLWidget.h

src/plugins/biostruct3d_view/src/BioStruct3DSplitter.cpp

src/plugins/biostruct3d_view/src/BioStruct3DSplitter.h

src/plugins/biostruct3d_view/src/BioStruct3DViewPlugin.cpp

src/plugins/biostruct3d_view/src/BioStruct3DViewPlugin.h

src/plugins/biostruct3d_view/src/GraphicUtils.cpp

src/plugins/biostruct3d_view/src/GraphicUtils.h

src/plugins/biostruct3d_view/src/TubeGLRenderer.cpp

src/plugins/biostruct3d_view/src/TubeGLRenderer.h

src/plugins/biostruct3d_view/src/WormsGLRenderer.cpp

src/plugins/biostruct3d_view/src/WormsGLRenderer.h

src/plugins/biostruct3d_view/transl/english.ts

src/plugins/biostruct3d_view/transl/russian.ts

src/plugins/chroma_view/chroma_view.pri

src/plugins/chroma_view/chroma_view.pro

src/plugins/chroma_view/src/ChromaViewPlugin.cpp

src/plugins/chroma_view/src/ChromaViewPlugin.h

src/plugins/chroma_view/src/ChromatogramView.cpp

src/plugins/chroma_view/src/ChromatogramView.h

src/plugins/chroma_view/transl/english.ts

src/plugins/chroma_view/transl/russian.ts

src/plugins/dna_export/dna_export.pri

src/plugins/dna_export/dna_export.pro

src/plugins/dna_export/src/DNAExportPlugin.cpp

src/plugins/dna_export/src/DNAExportPlugin.h

src/plugins/dna_export/transl/english.ts

src/plugins/dna_export/transl/russian.ts

src/plugins/dna_graphpack/dna_graphpack.pri

src/plugins/dna_graphpack/dna_graphpack.pro

src/plugins/dna_graphpack/src/BaseContentGraph.cpp

src/plugins/dna_graphpack/src/BaseContentGraph.h

src/plugins/dna_graphpack/src/CumulativeSkew.cpp

src/plugins/dna_graphpack/src/CumulativeSkew.h

src/plugins/dna_graphpack/src/DNAGraphPackPlugin.cpp

src/plugins/dna_graphpack/src/DNAGraphPackPlugin.h

src/plugins/dna_graphpack/src/DeviationGraph.cpp

src/plugins/dna_graphpack/src/DeviationGraph.h

src/plugins/dna_graphpack/src/EntropyAlgorithm.cpp

src/plugins/dna_graphpack/src/EntropyAlgorithm.h

src/plugins/dna_graphpack/src/KarlinSignatureDifferenceGraph.cpp

src/plugins/dna_graphpack/src/KarlinSignatureDifferenceGraph.h

src/plugins/dna_graphpack/transl/english.ts

src/plugins/dna_graphpack/transl/russian.ts

src/plugins/orf_marker/orf_marker.pri

src/plugins/orf_marker/orf_marker.pro

src/plugins/orf_marker/src/ORFDialog.cpp

src/plugins/orf_marker/src/ORFDialog.h

src/plugins/orf_marker/src/ORFMarkerPlugin.cpp

src/plugins/orf_marker/src/ORFMarkerPlugin.h

src/plugins/orf_marker/src/ORFMarkerTests.cpp

src/plugins/orf_marker/src/ORFMarkerTests.h

src/plugins/orf_marker/src/ORFWorker.cpp

src/plugins/orf_marker/src/ORFWorker.h

src/plugins/orf_marker/src/ui/ORFDialogUI.ui

src/plugins/orf_marker/transl/english.ts

src/plugins/orf_marker/transl/russian.ts

src/plugins/repeat_finder/repeat_finder.pri

src/plugins/repeat_finder/repeat_finder.pro

src/plugins/repeat_finder/src/RepeatFinderPlugin.cpp

src/plugins/repeat_finder/src/RepeatFinderPlugin.h

src/plugins/workflow_designer/src/ActorCfgModel.h

src/plugins/workflow_designer/src/ChooseItemDialog.cpp

src/plugins/workflow_designer/src/ChooseItemDialog.h

src/plugins/workflow_designer/src/ItemViewStyle.cpp

src/plugins/workflow_designer/src/ItemViewStyle.h

src/plugins/workflow_designer/src/IterationListWidget.cpp

src/plugins/workflow_designer/src/IterationListWidget.h

src/plugins/workflow_designer/src/SceneSerializer.cpp

src/plugins/workflow_designer/src/SceneSerializer.h

src/plugins/workflow_designer/src/SchemaConfigurationDialog.cpp

src/plugins/workflow_designer/src/SchemaConfigurationDialog.h

src/plugins/workflow_designer/src/WorkflowDesignerPlugin.cpp

src/plugins/workflow_designer/src/WorkflowDesignerPlugin.h

src/plugins/workflow_designer/src/WorkflowDocument.cpp

src/plugins/workflow_designer/src/WorkflowDocument.h

src/plugins/workflow_designer/src/WorkflowEditor.cpp

src/plugins/workflow_designer/src/WorkflowEditor.h

src/plugins/workflow_designer/src/WorkflowMetaDialog.cpp

src/plugins/workflow_designer/src/WorkflowMetaDialog.h

src/plugins/workflow_designer/src/WorkflowPalette.cpp

src/plugins/workflow_designer/src/WorkflowPalette.h

src/plugins/workflow_designer/src/WorkflowViewController.cpp

src/plugins/workflow_designer/src/WorkflowViewController.h

src/plugins/workflow_designer/src/WorkflowViewItems.cpp

src/plugins/workflow_designer/src/WorkflowViewItems.h

src/plugins/workflow_designer/src/library/BaseDocWorker.cpp

src/plugins/workflow_designer/src/library/BaseDocWorker.h

src/plugins/workflow_designer/src/library/CoreLib.cpp

src/plugins/workflow_designer/src/library/CoreLib.h

src/plugins/workflow_designer/src/library/DocActors.cpp

src/plugins/workflow_designer/src/library/DocActors.h

src/plugins/workflow_designer/src/library/DocWorkers.cpp

src/plugins/workflow_designer/src/library/DocWorkers.h

src/plugins/workflow_designer/src/library/FindWorker.cpp

src/plugins/workflow_designer/src/library/FindWorker.h

src/plugins/workflow_designer/src/library/GenericReadActor.cpp

src/plugins/workflow_designer/src/library/GenericReadActor.h

src/plugins/workflow_designer/src/library/GenericReadWorker.cpp

src/plugins/workflow_designer/src/library/GenericReadWorker.h

src/plugins/workflow_designer/src/ui/ChooseItemDialog.ui

src/plugins/workflow_designer/src/ui/WorkflowEditorWidget.ui

src/plugins/workflow_designer/transl/english.ts

src/plugins/workflow_designer/transl/russian.ts

src/plugins/workflow_designer/workflow_designer.pri

src/plugins/workflow_designer/workflow_designer.pro

src/plugins/workflow_designer/workflow_designer.qrc

src/plugins_3rdparty/sitecon/images/sitecon.png

src/plugins_3rdparty/sitecon/sitecon.pri

src/plugins_3rdparty/sitecon/sitecon.pro

src/plugins_3rdparty/sitecon/src/DIPropertiesTests.cpp

src/plugins_3rdparty/sitecon/src/DIPropertiesTests.h

src/plugins_3rdparty/sitecon/src/SiteconAlgorithm.cpp

src/plugins_3rdparty/sitecon/src/SiteconAlgorithm.h

src/plugins_3rdparty/sitecon/src/SiteconAlgorithmTests.cpp

src/plugins_3rdparty/sitecon/src/SiteconAlgorithmTests.h

src/plugins_3rdparty/sitecon/src/SiteconBuildDialogController.cpp

src/plugins_3rdparty/sitecon/src/SiteconBuildDialogController.h

src/plugins_3rdparty/sitecon/src/SiteconBuildWorker.cpp

src/plugins_3rdparty/sitecon/src/SiteconIO.cpp

src/plugins_3rdparty/sitecon/src/SiteconIO.h

src/plugins_3rdparty/sitecon/src/SiteconIOWorkers.cpp

src/plugins_3rdparty/sitecon/src/SiteconIOWorkers.h

src/plugins_3rdparty/sitecon/src/SiteconMath.cpp

src/plugins_3rdparty/sitecon/src/SiteconMath.h

src/plugins_3rdparty/sitecon/src/SiteconPlugin.cpp

src/plugins_3rdparty/sitecon/src/SiteconPlugin.h

src/plugins_3rdparty/sitecon/src/SiteconSearchDialogController.cpp

src/plugins_3rdparty/sitecon/src/SiteconSearchDialogController.h

src/plugins_3rdparty/sitecon/src/SiteconSearchTask.cpp

src/plugins_3rdparty/sitecon/src/SiteconSearchTask.h

src/plugins_3rdparty/sitecon/src/SiteconSearchWorker.cpp

src/plugins_3rdparty/sitecon/src/SiteconWorkers.h

src/plugins_3rdparty/sitecon/transl/english.ts

src/plugins_3rdparty/sitecon/transl/russian.ts

src/plugins_3rdparty/umuscle/src/MuscleAdapter.cpp

src/plugins_3rdparty/umuscle/src/MuscleAdapter.h

src/plugins_3rdparty/umuscle/src/MuscleAlignDialogController.cpp

src/plugins_3rdparty/umuscle/src/MuscleAlignDialogController.h

src/plugins_3rdparty/umuscle/src/MusclePlugin.cpp

src/plugins_3rdparty/umuscle/src/MusclePlugin.h

src/plugins_3rdparty/umuscle/src/MuscleTask.cpp

src/plugins_3rdparty/umuscle/src/MuscleTask.h

src/plugins_3rdparty/umuscle/src/MuscleWorker.cpp

src/plugins_3rdparty/umuscle/src/MuscleWorker.h

src/plugins_3rdparty/umuscle/src/TaskLocalStorage.cpp

src/plugins_3rdparty/umuscle/src/TaskLocalStorage.h

src/plugins_3rdparty/umuscle/src/muscle/aligngivenpath.cpp

src/plugins_3rdparty/umuscle/src/muscle/aligngivenpathsw.cpp

src/plugins_3rdparty/umuscle/src/muscle/aligntwomsas.cpp

src/plugins_3rdparty/umuscle/src/muscle/aligntwoprofs.cpp

src/plugins_3rdparty/umuscle/src/muscle/aln.cpp

src/plugins_3rdparty/umuscle/src/muscle/alpha.cpp

src/plugins_3rdparty/umuscle/src/muscle/alpha.h

src/plugins_3rdparty/umuscle/src/muscle/anchors.cpp

src/plugins_3rdparty/umuscle/src/muscle/bittraceback.cpp

src/plugins_3rdparty/umuscle/src/muscle/blosum62.cpp

src/plugins_3rdparty/umuscle/src/muscle/blosumla.cpp

src/plugins_3rdparty/umuscle/src/muscle/clust.cpp

src/plugins_3rdparty/umuscle/src/muscle/clust.h

src/plugins_3rdparty/umuscle/src/muscle/cluster.cpp

src/plugins_3rdparty/umuscle/src/muscle/cluster.h

src/plugins_3rdparty/umuscle/src/muscle/clustset.h

src/plugins_3rdparty/umuscle/src/muscle/clustsetdf.h

src/plugins_3rdparty/umuscle/src/muscle/clustsetmsa.h

src/plugins_3rdparty/umuscle/src/muscle/clwwt.cpp

src/plugins_3rdparty/umuscle/src/muscle/color.cpp

src/plugins_3rdparty/umuscle/src/muscle/cons.cpp

src/plugins_3rdparty/umuscle/src/muscle/diaglist.cpp

src/plugins_3rdparty/umuscle/src/muscle/diaglist.h

src/plugins_3rdparty/umuscle/src/muscle/diffobjscore.cpp

src/plugins_3rdparty/umuscle/src/muscle/diffpaths.cpp

src/plugins_3rdparty/umuscle/src/muscle/difftrees.cpp

src/plugins_3rdparty/umuscle/src/muscle/difftreese.cpp

src/plugins_3rdparty/umuscle/src/muscle/distcalc.cpp

src/plugins_3rdparty/umuscle/src/muscle/distcalc.h

src/plugins_3rdparty/umuscle/src/muscle/distfunc.cpp

src/plugins_3rdparty/umuscle/src/muscle/distfunc.h

src/plugins_3rdparty/umuscle/src/muscle/distpwkimura.cpp

src/plugins_3rdparty/umuscle/src/muscle/domuscle.cpp

src/plugins_3rdparty/umuscle/src/muscle/dosp.cpp

src/plugins_3rdparty/umuscle/src/muscle/dpregionlist.h

src/plugins_3rdparty/umuscle/src/muscle/dpreglist.cpp

src/plugins_3rdparty/umuscle/src/muscle/dpreglist.h

src/plugins_3rdparty/umuscle/src/muscle/drawtree.cpp

src/plugins_3rdparty/umuscle/src/muscle/edgelist.cpp

src/plugins_3rdparty/umuscle/src/muscle/edgelist.h

src/plugins_3rdparty/umuscle/src/muscle/enumopts.cpp

src/plugins_3rdparty/umuscle/src/muscle/enumopts.h

src/plugins_3rdparty/umuscle/src/muscle/enums.h

src/plugins_3rdparty/umuscle/src/muscle/enumtostr.cpp

src/plugins_3rdparty/umuscle/src/muscle/estring.cpp

src/plugins_3rdparty/umuscle/src/muscle/estring.h

src/plugins_3rdparty/umuscle/src/muscle/fasta.cpp

src/plugins_3rdparty/umuscle/src/muscle/fasta2.cpp

src/plugins_3rdparty/umuscle/src/muscle/fastclust.cpp

src/plugins_3rdparty/umuscle/src/muscle/fastdist.cpp

src/plugins_3rdparty/umuscle/src/muscle/fastdistjones.cpp

src/plugins_3rdparty/umuscle/src/muscle/fastdistkbit.cpp

src/plugins_3rdparty/umuscle/src/muscle/fastdistkmer.cpp

src/plugins_3rdparty/umuscle/src/muscle/fastdistmafft.cpp

src/plugins_3rdparty/umuscle/src/muscle/fastdistnuc.cpp

src/plugins_3rdparty/umuscle/src/muscle/fastscorepath2.cpp

src/plugins_3rdparty/umuscle/src/muscle/finddiags.cpp

src/plugins_3rdparty/umuscle/src/muscle/finddiagsn.cpp

src/plugins_3rdparty/umuscle/src/muscle/gapscoredimer.h

src/plugins_3rdparty/umuscle/src/muscle/glbalign.cpp

src/plugins_3rdparty/umuscle/src/muscle/glbalign352.cpp

src/plugins_3rdparty/umuscle/src/muscle/glbaligndiag.cpp

src/plugins_3rdparty/umuscle/src/muscle/glbalignle.cpp

src/plugins_3rdparty/umuscle/src/muscle/glbalignsimple.cpp

src/plugins_3rdparty/umuscle/src/muscle/glbalignsp.cpp

src/plugins_3rdparty/umuscle/src/muscle/glbalignspn.cpp

src/plugins_3rdparty/umuscle/src/muscle/glbalignss.cpp

src/plugins_3rdparty/umuscle/src/muscle/glbalndimer.cpp

src/plugins_3rdparty/umuscle/src/muscle/globals.cpp

src/plugins_3rdparty/umuscle/src/muscle/globalslinux.cpp

src/plugins_3rdparty/umuscle/src/muscle/globalsother.cpp

src/plugins_3rdparty/umuscle/src/muscle/globalswin32.cpp

src/plugins_3rdparty/umuscle/src/muscle/gonnet.cpp

src/plugins_3rdparty/umuscle/src/muscle/gonnet.h

src/plugins_3rdparty/umuscle/src/muscle/gotowt.cpp

src/plugins_3rdparty/umuscle/src/muscle/henikoffweight.cpp

src/plugins_3rdparty/umuscle/src/muscle/henikoffweightpb.cpp

src/plugins_3rdparty/umuscle/src/muscle/html.cpp

src/plugins_3rdparty/umuscle/src/muscle/hydro.cpp

src/plugins_3rdparty/umuscle/src/muscle/intmath.cpp

src/plugins_3rdparty/umuscle/src/muscle/intmath.h

src/plugins_3rdparty/umuscle/src/muscle/local.cpp

src/plugins_3rdparty/umuscle/src/muscle/main.cpp

src/plugins_3rdparty/umuscle/src/muscle/makerootmsa.cpp

src/plugins_3rdparty/umuscle/src/muscle/makerootmsab.cpp

src/plugins_3rdparty/umuscle/src/muscle/maketree.cpp

src/plugins_3rdparty/umuscle/src/muscle/mhack.cpp

src/plugins_3rdparty/umuscle/src/muscle/mpam200.cpp

src/plugins_3rdparty/umuscle/src/muscle/msa.cpp

src/plugins_3rdparty/umuscle/src/muscle/msa.h

src/plugins_3rdparty/umuscle/src/muscle/msa2.cpp

src/plugins_3rdparty/umuscle/src/muscle/msadist.h

src/plugins_3rdparty/umuscle/src/muscle/msadistkimura.cpp

src/plugins_3rdparty/umuscle/src/muscle/msf.cpp

src/plugins_3rdparty/umuscle/src/muscle/muscle.cpp

src/plugins_3rdparty/umuscle/src/muscle/muscle.h

src/plugins_3rdparty/umuscle/src/muscle/muscle_context.cpp

src/plugins_3rdparty/umuscle/src/muscle/muscle_context.h

src/plugins_3rdparty/umuscle/src/muscle/muscleout.cpp

src/plugins_3rdparty/umuscle/src/muscle/nucmx.cpp

src/plugins_3rdparty/umuscle/src/muscle/nwdasimple.cpp

src/plugins_3rdparty/umuscle/src/muscle/nwdasimple2.cpp

src/plugins_3rdparty/umuscle/src/muscle/nwdasmall.cpp

src/plugins_3rdparty/umuscle/src/muscle/nwrec.cpp

src/plugins_3rdparty/umuscle/src/muscle/nwsmall.cpp

src/plugins_3rdparty/umuscle/src/muscle/objscore.cpp

src/plugins_3rdparty/umuscle/src/muscle/objscore.h

src/plugins_3rdparty/umuscle/src/muscle/objscore2.cpp

src/plugins_3rdparty/umuscle/src/muscle/objscoreda.cpp

src/plugins_3rdparty/umuscle/src/muscle/onexception.cpp

src/plugins_3rdparty/umuscle/src/muscle/options.cpp

src/plugins_3rdparty/umuscle/src/muscle/outweights.cpp

src/plugins_3rdparty/umuscle/src/muscle/pam200mafft.cpp

src/plugins_3rdparty/umuscle/src/muscle/params.cpp

src/plugins_3rdparty/umuscle/src/muscle/params.h

src/plugins_3rdparty/umuscle/src/muscle/phy.cpp

src/plugins_3rdparty/umuscle/src/muscle/phy2.cpp

src/plugins_3rdparty/umuscle/src/muscle/phy3.cpp

src/plugins_3rdparty/umuscle/src/muscle/phy4.cpp

src/plugins_3rdparty/umuscle/src/muscle/phyfromclust.cpp

src/plugins_3rdparty/umuscle/src/muscle/phyfromfile.cpp

src/plugins_3rdparty/umuscle/src/muscle/physeq.cpp

src/plugins_3rdparty/umuscle/src/muscle/phytofile.cpp

src/plugins_3rdparty/umuscle/src/muscle/posgap.cpp

src/plugins_3rdparty/umuscle/src/muscle/ppscore.cpp

src/plugins_3rdparty/umuscle/src/muscle/profdb.cpp

src/plugins_3rdparty/umuscle/src/muscle/profile.cpp

src/plugins_3rdparty/umuscle/src/muscle/profile.h

src/plugins_3rdparty/umuscle/src/muscle/profilefrommsa.cpp

src/plugins_3rdparty/umuscle/src/muscle/progalign.cpp

src/plugins_3rdparty/umuscle/src/muscle/progress.cpp

src/plugins_3rdparty/umuscle/src/muscle/progressivealign.cpp

src/plugins_3rdparty/umuscle/src/muscle/pwpath.cpp

src/plugins_3rdparty/umuscle/src/muscle/pwpath.h

src/plugins_3rdparty/umuscle/src/muscle/readmx.cpp

src/plugins_3rdparty/umuscle/src/muscle/realigndiffs.cpp

src/plugins_3rdparty/umuscle/src/muscle/realigndiffse.cpp

src/plugins_3rdparty/umuscle/src/muscle/refine.cpp

src/plugins_3rdparty/umuscle/src/muscle/refinehoriz.cpp

src/plugins_3rdparty/umuscle/src/muscle/refinesubfams.cpp

src/plugins_3rdparty/umuscle/src/muscle/refinetree.cpp

src/plugins_3rdparty/umuscle/src/muscle/refinetreee.cpp

src/plugins_3rdparty/umuscle/src/muscle/refinevert.cpp

src/plugins_3rdparty/umuscle/src/muscle/refinew.cpp

src/plugins_3rdparty/umuscle/src/muscle/savebest.cpp

src/plugins_3rdparty/umuscle/src/muscle/scoredist.cpp

src/plugins_3rdparty/umuscle/src/muscle/scoregaps.cpp

src/plugins_3rdparty/umuscle/src/muscle/scorehistory.cpp

src/plugins_3rdparty/umuscle/src/muscle/scorehistory.h

src/plugins_3rdparty/umuscle/src/muscle/scorepp.cpp

src/plugins_3rdparty/umuscle/src/muscle/seq.cpp

src/plugins_3rdparty/umuscle/src/muscle/seq.h

src/plugins_3rdparty/umuscle/src/muscle/seqvect.cpp

src/plugins_3rdparty/umuscle/src/muscle/seqvect.h

src/plugins_3rdparty/umuscle/src/muscle/setblosumweights.cpp

src/plugins_3rdparty/umuscle/src/muscle/setgscweights.cpp

src/plugins_3rdparty/umuscle/src/muscle/setnewhandler.cpp

src/plugins_3rdparty/umuscle/src/muscle/spfast.cpp

src/plugins_3rdparty/umuscle/src/muscle/sptest.cpp

src/plugins_3rdparty/umuscle/src/muscle/stabilize.cpp

src/plugins_3rdparty/umuscle/src/muscle/subfam.cpp

src/plugins_3rdparty/umuscle/src/muscle/subfams.cpp

src/plugins_3rdparty/umuscle/src/muscle/sw.cpp

src/plugins_3rdparty/umuscle/src/muscle/termgaps.cpp

src/plugins_3rdparty/umuscle/src/muscle/textfile.cpp

src/plugins_3rdparty/umuscle/src/muscle/textfile.h

src/plugins_3rdparty/umuscle/src/muscle/threewaywt.cpp

src/plugins_3rdparty/umuscle/src/muscle/timing.h

src/plugins_3rdparty/umuscle/src/muscle/tomhydro.cpp

src/plugins_3rdparty/umuscle/src/muscle/traceback.cpp

src/plugins_3rdparty/umuscle/src/muscle/tracebackopt.cpp

src/plugins_3rdparty/umuscle/src/muscle/tracebacksw.cpp

src/plugins_3rdparty/umuscle/src/muscle/tree.h

src/plugins_3rdparty/umuscle/src/muscle/treefrommsa.cpp

src/plugins_3rdparty/umuscle/src/muscle/types.h

src/plugins_3rdparty/umuscle/src/muscle/typetostr.cpp

src/plugins_3rdparty/umuscle/src/muscle/unixio.h

src/plugins_3rdparty/umuscle/src/muscle/upgma2.cpp

src/plugins_3rdparty/umuscle/src/muscle/usage.cpp

src/plugins_3rdparty/umuscle/src/muscle/validateids.cpp

src/plugins_3rdparty/umuscle/src/muscle/vtml2.cpp

src/plugins_3rdparty/umuscle/src/muscle/writescorefile.cpp

src/plugins_3rdparty/umuscle/src/ui/MuscleAlignDialog.ui

src/plugins_3rdparty/umuscle/src/umuscle_tests/umuscleTests.cpp

src/plugins_3rdparty/umuscle/src/umuscle_tests/umuscleTests.h

src/plugins_3rdparty/umuscle/transl/english.ts

src/plugins_3rdparty/umuscle/transl/russian.ts

src/plugins_3rdparty/umuscle/umuscle.pri

src/plugins_3rdparty/umuscle/umuscle.pro

src/ugene_globals.pri

ugene.pro

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data/DBXRefRegistry.txt

data/back_translation/

data/back_translation/Bacteria/

data/back_translation/Bacteria/Arthrobacter_aurescens_TC1.cut

data/back_translation/Bacteria/Bacillus_subtilis.cut

data/back_translation/Bacteria/Escherichia_coli.cut

data/back_translation/Bacteria/Haemophilus_influenzae.cut

data/back_translation/Bacteria/Helicobacter_pylori.cut

data/back_translation/Bacteria/Listeria_monocytogenes.cut

data/back_translation/Bacteria/Neisseria_meningitidis.cut

data/back_translation/Bacteria/Salmonella_typhimurium_LT2.cut

data/back_translation/Bacteria/Streptomyces_coelicolor_A3(2).cut

data/back_translation/Bacteria/Sulfolobus_solfataricus_P2.cut

data/back_translation/Invertebrates/

data/back_translation/Invertebrates/Apis_mellifera_(honey_bee).cut

data/back_translation/Invertebrates/Caenorhabditis_elegans.cut

data/back_translation/Invertebrates/Drosophila_melanogaster_(fruit_fly).cut

data/back_translation/Invertebrates/Plasmodium_falciparum_(malaria_parasite_P._falciparum).cut

data/back_translation/Invertebrates/mitochondrion_Caenorhabditis_elegans.cut

data/back_translation/Invertebrates/mitochondrion_Drosophila_melanogaster_(fruit_fly).cut

data/back_translation/Mammalia/

data/back_translation/Mammalia/Bos_taurus_(cow).cut

data/back_translation/Mammalia/Canis_familiaris_(dog).cut

data/back_translation/Mammalia/Sus_scrofa_(pig).cut

data/back_translation/Mammalia/mitochondrion_Bos_taurus_(cow).cut

data/back_translation/Mammalia/mitochondrion_Sus_scrofa_(pig).cut

data/back_translation/Plants/

data/back_translation/Plants/Arabidopsis_thaliana_(thale_cress).cut

data/back_translation/Plants/Oryza_sativa.cut

data/back_translation/Plants/Zea_mays.cut

data/back_translation/Primates/

data/back_translation/Primates/Homo_sapiens_(human).cut

data/back_translation/Primates/Pan_troglodytes_(chimpanzee).cut

data/back_translation/Primates/mitochondrion_Homo_sapiens_(human).cut

data/back_translation/Primates/mitochondrion_Pan_troglodytes_(chimpanzee).cut

data/back_translation/Rodents/

data/back_translation/Rodents/Mus_musculus_(house_mouse).cut

data/back_translation/Rodents/Rattus_norvegicus_(Norway_rat).cut

data/back_translation/Vertebrates/

data/back_translation/Vertebrates/Gallus_gallus_(chicken).cut

data/back_translation/Vertebrates/Takifugu_rubripes_(Fugu_rubripes).cut

data/back_translation/Vertebrates/Xenopus_laevis_(African_clawed_frog).cut

data/back_translation/Vertebrates/mitochondrion_Gallus_gallus_(chicken).cut

data/back_translation/Vertebrates/mitochondrion_Takifugu_rubripes_(Fugu_rubripes).cut

data/back_translation/Viruses/

data/back_translation/Viruses/Human_immunodeficiency_virus_1_(HIV-1).cut

data/back_translation/Viruses/Influenza_A_virus.cut

data/back_translation/Yeast/

data/back_translation/Yeast/Saccharomyces_cerevisiae_(baker's_yeast).cut

data/back_translation/tables.xml

data/biostruct3d_plugin/

data/biostruct3d_plugin/BioStruct3DLinks.txt

data/cmdline/align-clustalw.uwl

data/cmdline/align-kalign.uwl

data/cmdline/align-mafft.uwl

data/cmdline/align-tcoffee.uwl

data/cmdline/align.uwl

data/cmdline/bowtie-build.uwl

data/cmdline/bowtie.uwl

data/cmdline/convert-msa.uwl

data/cmdline/convert-seq.uwl

data/cmdline/extract-sequence.uwl

data/cmdline/fetch-sequence.uwl

data/cmdline/fetch.uwl

data/cmdline/find-orfs.uwl

data/cmdline/find-repeats.uwl

data/cmdline/find-sw.uwl

data/cmdline/generate-dna.uwl

data/cmdline/hmm2-build.uwl

data/cmdline/hmm2-search.uwl

data/cmdline/join-quality.uwl

data/cmdline/local-blast+.uwl

data/cmdline/local-blast.uwl

data/cmdline/pfm-build.uwl

data/cmdline/pfm-search.uwl

data/cmdline/pwm-build.uwl

data/cmdline/pwm-search.uwl

data/cmdline/query.uwl

data/cmdline/remote-request.uwl

data/cmdline/revcompl.uwl

data/cmdline/sitecon-build.uwl

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data/enzymes/rebase_v003_all.bairoch.gz

data/enzymes/rebase_v003_t2_com.bairoch.gz

data/position_weight_matrix/

data/position_weight_matrix/JASPAR/

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data/position_weight_matrix/UniPROBE/Cell08/Hmbox1_2674.1.pwm

data/position_weight_matrix/UniPROBE/Cell08/Hmx1_3423.1.pwm

data/position_weight_matrix/UniPROBE/Cell08/Hmx2_3424.3.pwm

data/position_weight_matrix/UniPROBE/Cell08/Hmx3_3490.2.pwm

data/position_weight_matrix/UniPROBE/Cell08/Homez_1063.2.pwm

data/position_weight_matrix/UniPROBE/Cell08/Hoxa10_2318.1.pwm

data/position_weight_matrix/UniPROBE/Cell08/Hoxa11_2218.1.pwm

data/position_weight_matrix/UniPROBE/Cell08/Hoxa13_3126.1.pwm

data/position_weight_matrix/UniPROBE/Cell08/Hoxa1_3425.1.pwm

data/position_weight_matrix/UniPROBE/Cell08/Hoxa2_3079.1.pwm

data/position_weight_matrix/UniPROBE/Cell08/Hoxa3_2783.2.pwm

data/position_weight_matrix/UniPROBE/Cell08/Hoxa4_3426.1.pwm

data/position_weight_matrix/UniPROBE/Cell08/Hoxa5_3415.1.pwm

data/position_weight_matrix/UniPROBE/Cell08/Hoxa6_1040.1.pwm

data/position_weight_matrix/UniPROBE/Cell08/Hoxa7_2668.2.pwm

data/position_weight_matrix/UniPROBE/Cell08/Hoxa7_3750.1.pwm

data/position_weight_matrix/UniPROBE/Cell08/Hoxa9_2622.2.pwm

data/position_weight_matrix/UniPROBE/Cell08/Hoxb13_3479.1.pwm

data/position_weight_matrix/UniPROBE/Cell08/Hoxb3_1720.2.pwm

data/position_weight_matrix/UniPROBE/Cell08/Hoxb4_2627.1.pwm

data/position_weight_matrix/UniPROBE/Cell08/Hoxb5_3122.2.pwm

data/position_weight_matrix/UniPROBE/Cell08/Hoxb6_3428.2.pwm

data/position_weight_matrix/UniPROBE/Cell08/Hoxb7_3953.1.pwm

data/position_weight_matrix/UniPROBE/Cell08/Hoxb8_3780.2.pwm

data/position_weight_matrix/UniPROBE/Cell08/Hoxb9_3413.1.pwm

data/position_weight_matrix/UniPROBE/Cell08/Hoxc10_2779.2.pwm

data/position_weight_matrix/UniPROBE/Cell08/Hoxc11_3718.2.pwm

data/position_weight_matrix/UniPROBE/Cell08/Hoxc12_3480.1.pwm

data/position_weight_matrix/UniPROBE/Cell08/Hoxc13_3127.1.pwm

data/position_weight_matrix/UniPROBE/Cell08/Hoxc4_3491.1.pwm

data/position_weight_matrix/UniPROBE/Cell08/Hoxc5_2630.2.pwm

data/position_weight_matrix/UniPROBE/Cell08/Hoxc6_3954.2.pwm

data/position_weight_matrix/UniPROBE/Cell08/Hoxc8_3429.2.pwm

data/position_weight_matrix/UniPROBE/Cell08/Hoxc9_2367.2.pwm

data/position_weight_matrix/UniPROBE/Cell08/Hoxd10_2368.2.pwm

data/position_weight_matrix/UniPROBE/Cell08/Hoxd11_3873.1.pwm

data/position_weight_matrix/UniPROBE/Cell08/Hoxd12_3481.1.pwm

data/position_weight_matrix/UniPROBE/Cell08/Hoxd13_2356.1.pwm

data/position_weight_matrix/UniPROBE/Cell08/Hoxd1_3448.1.pwm

data/position_weight_matrix/UniPROBE/Cell08/Hoxd3_1742.2.pwm

data/position_weight_matrix/UniPROBE/Cell08/Hoxd8_2644.1.pwm

data/position_weight_matrix/UniPROBE/Cell08/Ipf1_3815.1.pwm

data/position_weight_matrix/UniPROBE/Cell08/Irx2_0900.3.pwm

data/position_weight_matrix/UniPROBE/Cell08/Irx3_0920.1.pwm

data/position_weight_matrix/UniPROBE/Cell08/Irx3_2226.1.pwm

data/position_weight_matrix/UniPROBE/Cell08/Irx4_2242.3.pwm

data/position_weight_matrix/UniPROBE/Cell08/Irx5_2385.1.pwm

data/position_weight_matrix/UniPROBE/Cell08/Irx6_2623.2.pwm

data/position_weight_matrix/UniPROBE/Cell08/Isl2_3430.1.pwm

data/position_weight_matrix/UniPROBE/Cell08/Isx_3445.1.pwm

data/position_weight_matrix/UniPROBE/Cell08/Lbx2_3869.2.pwm

data/position_weight_matrix/UniPROBE/Cell08/Lhx1_2240.2.pwm

data/position_weight_matrix/UniPROBE/Cell08/Lhx2_0953.2.pwm

data/position_weight_matrix/UniPROBE/Cell08/Lhx3_3431.1.pwm

data/position_weight_matrix/UniPROBE/Cell08/Lhx4_1719.2.pwm

data/position_weight_matrix/UniPROBE/Cell08/Lhx5_2279.1.pwm

data/position_weight_matrix/UniPROBE/Cell08/Lhx6_2272.1.pwm

data/position_weight_matrix/UniPROBE/Cell08/Lhx6_3432.1.pwm

data/position_weight_matrix/UniPROBE/Cell08/Lhx8_2247.2.pwm

data/position_weight_matrix/UniPROBE/Cell08/Lhx9_3492.1.pwm

data/position_weight_matrix/UniPROBE/Cell08/Lmx1a_2238.2.pwm

data/position_weight_matrix/UniPROBE/Cell08/Lmx1b_3433.2.pwm

data/position_weight_matrix/UniPROBE/Cell08/Meis1_2335.1.pwm

data/position_weight_matrix/UniPROBE/Cell08/Meox1_2310.2.pwm

data/position_weight_matrix/UniPROBE/Cell08/Mrg1_2246.2.pwm

data/position_weight_matrix/UniPROBE/Cell08/Mrg2_2302.1.pwm

data/position_weight_matrix/UniPROBE/Cell08/Msx1_3031.2.pwm

data/position_weight_matrix/UniPROBE/Cell08/Msx2_3449.1.pwm

data/position_weight_matrix/UniPROBE/Cell08/Msx3_3206.1.pwm

data/position_weight_matrix/UniPROBE/Cell08/Nkx1-1_3856.3.pwm

data/position_weight_matrix/UniPROBE/Cell08/Nkx1-2_3214.1.pwm

data/position_weight_matrix/UniPROBE/Cell08/Nkx2-2_2823.1.pwm

data/position_weight_matrix/UniPROBE/Cell08/Nkx2-3_3435.1.pwm

data/position_weight_matrix/UniPROBE/Cell08/Nkx2-4_3074.1.pwm

data/position_weight_matrix/UniPROBE/Cell08/Nkx2-5_3436.1.pwm

data/position_weight_matrix/UniPROBE/Cell08/Nkx2-6_3437.1.pwm

data/position_weight_matrix/UniPROBE/Cell08/Nkx2-9_3082.1.pwm

data/position_weight_matrix/UniPROBE/Cell08/Nkx3-1_2923.2.pwm

data/position_weight_matrix/UniPROBE/Cell08/Nkx6-1_2825.1.pwm

data/position_weight_matrix/UniPROBE/Cell08/Nkx6-1_2825.2.pwm

data/position_weight_matrix/UniPROBE/Cell08/Nkx6-3_3446.1.pwm

data/position_weight_matrix/UniPROBE/Cell08/Obox1_3970.2.pwm

data/position_weight_matrix/UniPROBE/Cell08/Obox2_3438.2.pwm

data/position_weight_matrix/UniPROBE/Cell08/Obox3_3439.1.pwm

data/position_weight_matrix/UniPROBE/Cell08/Obox5_2284.1.pwm

data/position_weight_matrix/UniPROBE/Cell08/Obox5_3963.2.pwm

data/position_weight_matrix/UniPROBE/Cell08/Obox6_3440.2.pwm

data/position_weight_matrix/UniPROBE/Cell08/Og2x_3719.1.pwm

data/position_weight_matrix/UniPROBE/Cell08/Otp_3496.1.pwm

data/position_weight_matrix/UniPROBE/Cell08/Otx1_2325.1.pwm

data/position_weight_matrix/UniPROBE/Cell08/Otx2_3441.1.pwm

data/position_weight_matrix/UniPROBE/Cell08/Pax4_3989.2.pwm

data/position_weight_matrix/UniPROBE/Cell08/Pax6_3838.3.pwm

data/position_weight_matrix/UniPROBE/Cell08/Pax7_3783.1.pwm

data/position_weight_matrix/UniPROBE/Cell08/Pbx1_3203.1.pwm

data/position_weight_matrix/UniPROBE/Cell08/Phox2a_3947.1.pwm

data/position_weight_matrix/UniPROBE/Cell08/Phox2b_3948.1.pwm

data/position_weight_matrix/UniPROBE/Cell08/Pitx1_2312.1.pwm

data/position_weight_matrix/UniPROBE/Cell08/Pitx2_2274.3.pwm

data/position_weight_matrix/UniPROBE/Cell08/Pitx3_3497.2.pwm

data/position_weight_matrix/UniPROBE/Cell08/Pknox1_2364.2.pwm

data/position_weight_matrix/UniPROBE/Cell08/Pknox2_3077.2.pwm

data/position_weight_matrix/UniPROBE/Cell08/Pou1f1_3818.1.pwm

data/position_weight_matrix/UniPROBE/Cell08/Pou2f1_3081.2.pwm

data/position_weight_matrix/UniPROBE/Cell08/Pou2f2_3748.1.pwm

data/position_weight_matrix/UniPROBE/Cell08/Pou2f3_3986.2.pwm

data/position_weight_matrix/UniPROBE/Cell08/Pou3f1_3819.1.pwm

data/position_weight_matrix/UniPROBE/Cell08/Pou3f2_2824.1.pwm

data/position_weight_matrix/UniPROBE/Cell08/Pou3f3_3235.2.pwm

data/position_weight_matrix/UniPROBE/Cell08/Pou3f4_3773.1.pwm

data/position_weight_matrix/UniPROBE/Cell08/Pou4f3_2791.1.pwm

data/position_weight_matrix/UniPROBE/Cell08/Pou6f1_1731.2.pwm

data/position_weight_matrix/UniPROBE/Cell08/Pou6f1_3733.1.pwm

data/position_weight_matrix/UniPROBE/Cell08/Prop1_3949.1.pwm

data/position_weight_matrix/UniPROBE/Cell08/Prrx1_3442.1.pwm

data/position_weight_matrix/UniPROBE/Cell08/Prrx2_3072.1.pwm

data/position_weight_matrix/UniPROBE/Cell08/Rax_3443.1.pwm

data/position_weight_matrix/UniPROBE/Cell08/Rhox11_1765.2.pwm

data/position_weight_matrix/UniPROBE/Cell08/Rhox11_2205.1.pwm

data/position_weight_matrix/UniPROBE/Cell08/Rhox6_4251.1.pwm

data/position_weight_matrix/UniPROBE/Cell08/Shox2_2641.2.pwm

data/position_weight_matrix/UniPROBE/Cell08/Six1_0935.2.pwm

data/position_weight_matrix/UniPROBE/Cell08/Six2_2307.2.pwm

data/position_weight_matrix/UniPROBE/Cell08/Six3_1732.2.pwm

data/position_weight_matrix/UniPROBE/Cell08/Six4_2860.1.pwm

data/position_weight_matrix/UniPROBE/Cell08/Six6_2267.4.pwm

data/position_weight_matrix/UniPROBE/Cell08/Six6_2267.5.pwm

data/position_weight_matrix/UniPROBE/Cell08/Tcf1_2666.2.pwm

data/position_weight_matrix/UniPROBE/Cell08/Tcf2_0913.2.pwm

data/position_weight_matrix/UniPROBE/Cell08/Tgif1_2342.2.pwm

data/position_weight_matrix/UniPROBE/Cell08/Tgif2_3451.1.pwm

data/position_weight_matrix/UniPROBE/Cell08/Titf1_1722.2.pwm

data/position_weight_matrix/UniPROBE/Cell08/Tlx2_3498.2.pwm

data/position_weight_matrix/UniPROBE/Cell08/Uncx4.1_2281.2.pwm

data/position_weight_matrix/UniPROBE/Cell08/Vax1_3499.1.pwm

data/position_weight_matrix/UniPROBE/Cell08/Vax2_3500.1.pwm

data/position_weight_matrix/UniPROBE/Cell08/Vsx1_1728.1.pwm

data/position_weight_matrix/UniPROBE/GR09/

data/position_weight_matrix/UniPROBE/GR09/Aft1.pwm

data/position_weight_matrix/UniPROBE/GR09/Aro80.pwm

data/position_weight_matrix/UniPROBE/GR09/Asg1.pwm

data/position_weight_matrix/UniPROBE/GR09/Bas1.pwm

data/position_weight_matrix/UniPROBE/GR09/Cbf1.pwm

data/position_weight_matrix/UniPROBE/GR09/Cep3.pwm

data/position_weight_matrix/UniPROBE/GR09/Cha4.pwm

data/position_weight_matrix/UniPROBE/GR09/Cup9.pwm

data/position_weight_matrix/UniPROBE/GR09/Ecm22.pwm

data/position_weight_matrix/UniPROBE/GR09/Fhl1.pwm

data/position_weight_matrix/UniPROBE/GR09/Fkh1.pwm

data/position_weight_matrix/UniPROBE/GR09/Fkh2.pwm

data/position_weight_matrix/UniPROBE/GR09/Gal4.pwm

data/position_weight_matrix/UniPROBE/GR09/Gat1.pwm

data/position_weight_matrix/UniPROBE/GR09/Gat3.pwm

data/position_weight_matrix/UniPROBE/GR09/Gat4.pwm

data/position_weight_matrix/UniPROBE/GR09/Gcn4.pwm

data/position_weight_matrix/UniPROBE/GR09/Gln3.pwm

data/position_weight_matrix/UniPROBE/GR09/Gsm1.pwm

data/position_weight_matrix/UniPROBE/GR09/Gzf3.pwm

data/position_weight_matrix/UniPROBE/GR09/Hal9.pwm

data/position_weight_matrix/UniPROBE/GR09/Leu3.pwm

data/position_weight_matrix/UniPROBE/GR09/Lys14.pwm

data/position_weight_matrix/UniPROBE/GR09/Matalpha2.pwm

data/position_weight_matrix/UniPROBE/GR09/Mbp1.pwm

data/position_weight_matrix/UniPROBE/GR09/Mcm1.pwm

data/position_weight_matrix/UniPROBE/GR09/Met32.pwm

data/position_weight_matrix/UniPROBE/GR09/Mga1.pwm

data/position_weight_matrix/UniPROBE/GR09/Mig1.pwm

data/position_weight_matrix/UniPROBE/GR09/Mig2.pwm

data/position_weight_matrix/UniPROBE/GR09/Mig3.pwm

data/position_weight_matrix/UniPROBE/GR09/Ndt80.pwm

data/position_weight_matrix/UniPROBE/GR09/Nhp6a.pwm

data/position_weight_matrix/UniPROBE/GR09/Nhp6b.pwm

data/position_weight_matrix/UniPROBE/GR09/Nrg1.pwm

data/position_weight_matrix/UniPROBE/GR09/Oaf1.pwm

data/position_weight_matrix/UniPROBE/GR09/Pbf1.pwm

data/position_weight_matrix/UniPROBE/GR09/Pbf2.pwm

data/position_weight_matrix/UniPROBE/GR09/Pdr1.pwm

data/position_weight_matrix/UniPROBE/GR09/Phd1.pwm

data/position_weight_matrix/UniPROBE/GR09/Pho2.pwm

data/position_weight_matrix/UniPROBE/GR09/Pho4.pwm

data/position_weight_matrix/UniPROBE/GR09/Put3.pwm

data/position_weight_matrix/UniPROBE/GR09/Rap1.pwm

data/position_weight_matrix/UniPROBE/GR09/Rdr1.pwm

data/position_weight_matrix/UniPROBE/GR09/Rds1.pwm

data/position_weight_matrix/UniPROBE/GR09/Rds2.pwm

data/position_weight_matrix/UniPROBE/GR09/Rgt1.pwm

data/position_weight_matrix/UniPROBE/GR09/Rph1.pwm

data/position_weight_matrix/UniPROBE/GR09/Rpn4.pwm

data/position_weight_matrix/UniPROBE/GR09/Rsc3.pwm

data/position_weight_matrix/UniPROBE/GR09/Rsc30.pwm

data/position_weight_matrix/UniPROBE/GR09/Rtg3.pwm

data/position_weight_matrix/UniPROBE/GR09/Sfl1.pwm

data/position_weight_matrix/UniPROBE/GR09/Sfp1.pwm

data/position_weight_matrix/UniPROBE/GR09/Sip4.pwm

data/position_weight_matrix/UniPROBE/GR09/Skn7.pwm

data/position_weight_matrix/UniPROBE/GR09/Smp1.pwm

data/position_weight_matrix/UniPROBE/GR09/Spt15.pwm

data/position_weight_matrix/UniPROBE/GR09/Srd1.pwm

data/position_weight_matrix/UniPROBE/GR09/Stb3.pwm

data/position_weight_matrix/UniPROBE/GR09/Stp2.pwm

data/position_weight_matrix/UniPROBE/GR09/Stp4.pwm

data/position_weight_matrix/UniPROBE/GR09/Sum1.pwm

data/position_weight_matrix/UniPROBE/GR09/Sut2.pwm

data/position_weight_matrix/UniPROBE/GR09/Tbf1.pwm

data/position_weight_matrix/UniPROBE/GR09/Tbs1.pwm

data/position_weight_matrix/UniPROBE/GR09/Tea1.pwm

data/position_weight_matrix/UniPROBE/GR09/Tec1.pwm

data/position_weight_matrix/UniPROBE/GR09/Tye7.pwm

data/position_weight_matrix/UniPROBE/GR09/Ume6.pwm

data/position_weight_matrix/UniPROBE/GR09/Usv1.pwm

data/position_weight_matrix/UniPROBE/GR09/Xbp1.pwm

data/position_weight_matrix/UniPROBE/GR09/Yap1.pwm

data/position_weight_matrix/UniPROBE/GR09/Yap6.pwm

data/position_weight_matrix/UniPROBE/GR09/Ybr239c.pwm

data/position_weight_matrix/UniPROBE/GR09/Ydr520c.pwm

data/position_weight_matrix/UniPROBE/GR09/Yer130c.pwm

data/position_weight_matrix/UniPROBE/GR09/Ygr067c.pwm

data/position_weight_matrix/UniPROBE/GR09/Ykl222c.pwm

data/position_weight_matrix/UniPROBE/GR09/Yll054c.pwm

data/position_weight_matrix/UniPROBE/GR09/Yml081w.pwm

data/position_weight_matrix/UniPROBE/GR09/Ynr063w.pwm

data/position_weight_matrix/UniPROBE/GR09/Yox1.pwm

data/position_weight_matrix/UniPROBE/GR09/Ypr013c.pwm

data/position_weight_matrix/UniPROBE/GR09/Ypr015c.pwm

data/position_weight_matrix/UniPROBE/GR09/Ypr196w.pwm

data/position_weight_matrix/UniPROBE/GR09/Yrm1.pwm

data/position_weight_matrix/UniPROBE/GR09/Yrr1.pwm

data/position_weight_matrix/UniPROBE/NBT06/

data/position_weight_matrix/UniPROBE/NBT06/Cbf1.pwm

data/position_weight_matrix/UniPROBE/NBT06/Ceh-22.pwm

data/position_weight_matrix/UniPROBE/NBT06/Oct-1.pwm

data/position_weight_matrix/UniPROBE/NBT06/Rap1.pwm

data/position_weight_matrix/UniPROBE/NBT06/Zif268.pwm

data/position_weight_matrix/UniPROBE/PNAS08/

data/position_weight_matrix/UniPROBE/PNAS08/Cgd2_3490.pwm

data/position_weight_matrix/UniPROBE/PNAS08/PF14_0633.pwm

data/position_weight_matrix/UniPROBE/PNAS08/PFF0200c.pwm

data/position_weight_matrix/UniPROBE/all_uniprobe.csv

data/primer3/drosophila.w.transposons.txt

data/primer3/humrep_and_simple.txt

data/primer3/rodent_ref.txt

data/primer3/rodrep_and_simple.txt

data/query_samples/

data/query_samples/RepeatsWithORF.uql

data/query_samples/SimpleGene.uql

data/samples/1CF7.PDB

data/samples/1CRN.PDB

data/samples/3INS.PDB

data/samples/ABIF/

data/samples/ABIF/A01.abi

data/samples/ACE/

data/samples/ACE/BL060C3.ace

data/samples/ACE/K26.ace

data/samples/CLUSTALW/

data/samples/CLUSTALW/COI.aln

data/samples/CLUSTALW/HIV-1.aln

data/samples/CLUSTALW/ty3.aln.gz

data/samples/EMBL/

data/samples/EMBL/AF177870.emb

data/samples/EMBL/AL000263.emb

data/samples/FASTA/

data/samples/FASTA/human_T1.fa

data/samples/FASTQ/

data/samples/FASTQ/eas.fastq

data/samples/GFF/

data/samples/GFF/5prime_utr_intron_A20.gff

data/samples/GFF/5prime_utr_intron_A21.gff

data/samples/Genbank/

data/samples/Genbank/CVU55762.gb

data/samples/Genbank/NC_014267.1.gb

data/samples/Genbank/PBR322 .gb

data/samples/Genbank/murine.gb

data/samples/Genbank/sars.gb

data/samples/HMM/

data/samples/HMM/aligment15900.hmm

data/samples/MMDB/

data/samples/MMDB/1CRN.prt

data/samples/MMDB/2JQS.prt

data/samples/MSF/

data/samples/MSF/HMA.msf

data/samples/MSF/lipid8.msf

data/samples/MSF/pla2_20.msf

data/samples/Newick/

data/samples/Newick/COI.nwk

data/samples/PDB/

data/samples/PDB/1CF7.PDB

data/samples/PDB/1CRN.PDB

data/samples/PDB/3INS.PDB

data/samples/Raw/

data/samples/Raw/raw.seq

data/samples/SCF/

data/samples/SCF/90-JRI-07.scf

data/samples/Stockholm/

data/samples/Stockholm/CBS.sto

data/samples/Stockholm/UPSK.sto

data/samples/Swiss-Prot/

data/samples/Swiss-Prot/D0VTW9.txt

data/samples/Swiss-Prot/P01375.txt

data/samples/Swiss-Prot/P16152.txt

data/samples/human_T1.fa

data/samples/murine.gb

data/samples/sars.gb

data/schemas_private/

data/schemas_private/bowtie-build.uwl

data/schemas_private/bowtie.uwl

data/schemas_private/kalign.uwl

data/schemas_private/muscle.uwl

data/sitecon_models/CEBP_a.sef.sitecon

data/sitecon_models/CEBPall.sef.sitecon

data/sitecon_models/CLOCK.sef.sitecon

data/sitecon_models/CRE.sef.sitecon

data/sitecon_models/E2F1.sef.sitecon

data/sitecon_models/E2F1DP1sel1.sef.sitecon

data/sitecon_models/EGR1.sef.sitecon

data/sitecon_models/Eklf.sef.sitecon

data/sitecon_models/GATA1.sef.sitecon

data/sitecon_models/GATA_ALL.sef.sitecon

data/sitecon_models/Gata2.sef.sitecon

data/sitecon_models/Gata3.sef.sitecon

data/sitecon_models/HMG1.sef.sitecon

data/sitecon_models/HNF1.sef.sitecon

data/sitecon_models/HNF3_4.sef.sitecon

data/sitecon_models/HNF4.sef.sitecon

data/sitecon_models/MYOGsel3.sef.sitecon

data/sitecon_models/MyoD.sef.sitecon

data/sitecon_models/NF1.sef.sitecon

data/sitecon_models/NFATp.sef.sitecon

data/sitecon_models/NFkB_all.sef.sitecon

data/sitecon_models/NFkB_hetero.sef.sitecon

data/sitecon_models/NFkB_homo.sef.sitecon

data/sitecon_models/Nf_e2.sef.sitecon

data/sitecon_models/Nrf2.sef.sitecon

data/sitecon_models/Oct1.sef.sitecon

data/sitecon_models/Oct_all.sef.sitecon

data/sitecon_models/PPRE.sef.sitecon

data/sitecon_models/Pu1.sef.sitecon

data/sitecon_models/SRE_can.sef.sitecon

data/sitecon_models/STAT.sef.sitecon

data/sitecon_models/STAT1.sef.sitecon

data/sitecon_models/TTF1.sef.sitecon

data/sitecon_models/USF.sef.sitecon

data/sitecon_models/cMyc_can.sef.sitecon

data/sitecon_models/er2.sef.sitecon

data/sitecon_models/eukaryotic/

data/sitecon_models/eukaryotic/CEBP_a.sitecon.gz

data/sitecon_models/eukaryotic/CEBPall.sitecon.gz

data/sitecon_models/eukaryotic/CLOCK.sitecon.gz

data/sitecon_models/eukaryotic/CRE.sitecon.gz

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data/workflow_samples/

data/workflow_samples/Alignment/

data/workflow_samples/Alignment/basic_align.uwl

data/workflow_samples/Conversions/

data/workflow_samples/Conversions/faqual2fastq.uwl

data/workflow_samples/Conversions/msa2clustal.uwl

data/workflow_samples/Conversions/query2alignment.uwl

data/workflow_samples/Conversions/seq2gen.uwl

data/workflow_samples/Custom elements/

data/workflow_samples/Custom elements/script-create-alignment.uwl

data/workflow_samples/Custom elements/script-dump-sequence-info.uwl

data/workflow_samples/Custom elements/script-quality-filter.uwl

data/workflow_samples/DNA assembly/

data/workflow_samples/DNA assembly/bowtie-read-index.uwl

data/workflow_samples/DNA assembly/gen-al-read-index.uwl

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data/workflow_samples/HMMER/build-test-HMM.uwl

data/workflow_samples/HMMER/searchHMM.uwl

data/workflow_samples/Transcriptomics/

data/workflow_samples/Transcriptomics/SearchTFBS.uwl

data/workflow_samples/users/

data/workflow_samples/users/CreateAlignment.usa

data/workflow_samples/users/Dump sequence info.usa

data/workflow_samples/users/QualityFilter.usa

debian/README.Debian

debian/changelog

debian/copyright

debian/patches/

debian/patches/do_not_strip.patch

debian/patches/series

debian/source/format

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src/core/src/core_api/DBXRefRegistry.cpp

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src/core/src/core_api/DNAAlphabet.cpp

src/core/src/core_api/DNAAlphabet.h

src/core/src/core_api/DNATranslation.cpp

src/core/src/core_api/DNATranslation.h

src/core/src/core_api/DocumentFormatConfigurators.cpp

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src/core/src/core_api/Task.cpp

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src/core/src/datatype/AnnotationData.h

src/core/src/datatype/BioStruct3D.cpp

src/core/src/datatype/BioStruct3D.h

src/core/src/datatype/DNAChromatogram.h

src/core/src/datatype/DNASequence.cpp

src/core/src/datatype/DNASequence.h

src/core/src/datatype/MAlignment.cpp

src/core/src/datatype/MAlignment.h

src/core/src/datatype/PhyTree.cpp

src/core/src/datatype/PhyTree.h

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src/core/src/document_format/ABIFormat.cpp

src/core/src/document_format/ABIFormat.h

src/core/src/document_format/BaseAlphabets.cpp

src/core/src/document_format/BaseTranslations.cpp

src/core/src/document_format/ClustalWAlnFormat.cpp

src/core/src/document_format/ClustalWAlnFormat.h

src/core/src/document_format/DNAAlphabetRegistryImpl.cpp

src/core/src/document_format/DNAAlphabetRegistryImpl.h

src/core/src/document_format/DNATranslationImpl.cpp

src/core/src/document_format/DNATranslationImpl.h

src/core/src/document_format/DocumentFormatUtils.cpp

src/core/src/document_format/DocumentFormatUtils.h

src/core/src/document_format/EMBLGenbankAbstractDocument.cpp

src/core/src/document_format/EMBLGenbankAbstractDocument.h

src/core/src/document_format/EMBLPlainTextFormat.cpp

src/core/src/document_format/EMBLPlainTextFormat.h

src/core/src/document_format/FastaFormat.cpp

src/core/src/document_format/FastaFormat.h

src/core/src/document_format/GenbankLocationParser.cpp

src/core/src/document_format/GenbankLocationParser.h

src/core/src/document_format/GenbankPlainTextFormat.cpp

src/core/src/document_format/GenbankPlainTextFormat.h

src/core/src/document_format/IOLibUtils.h

src/core/src/document_format/NewickFormat.cpp

src/core/src/document_format/NewickFormat.h

src/core/src/document_format/PDBFormat.cpp

src/core/src/document_format/PDBFormat.h

src/core/src/document_format/PlainTextFormat.cpp

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src/core/src/document_format/RawDNASequenceFormat.cpp

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src/core/src/document_format/SCFFormat.cpp

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src/core/src/document_format/StockholmFormat.cpp

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src/core/src/gobjects/AnnotationSettings.cpp

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src/core/src/gobjects/AnnotationTableObject.cpp

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src/core/src/gobjects/BioStruct3DObject.cpp

src/core/src/gobjects/BioStruct3DObject.h

src/core/src/gobjects/DNAChromatogramObject.cpp

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src/core/src/gobjects/DNASequenceObject.cpp

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src/core/src/gobjects/GObjectRelationRoles.cpp

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src/core/src/gobjects/GObjectUtils.cpp

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src/core/src/gobjects/MAlignmentObject.cpp

src/core/src/gobjects/MAlignmentObject.h

src/core/src/gobjects/PhyTreeObject.cpp

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src/core/src/test_framework/GTest.cpp

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src/core/src/util_algorithm/MSAUtils.cpp

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src/core/src/util_gui/AnnotationSettingsDialogController.cpp

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src/core/src/util_gui/BaseDocumentFormatConfigurators.cpp

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src/core/src/util_gui/ProjectTreeItemSelectorDialog.cpp

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src/core/src/util_ov_annotated_dna/ADVAnnotationCreation.cpp

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src/core/src/util_ov_msaedit/MSAEditor.cpp

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src/core/src/util_ov_textview/SimpleTextObjectView.cpp

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src/core/src/util_tasks/AddDocumentTask.cpp

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src/core/src/util_tasks/CreateAnnotationTask.cpp

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src/corelibs/U2Algorithm/src/util_algorithm/RollingMatrix.h

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src/corelibs/U2Algorithm/src/util_msa_consensus/MSAConsensusAlgorithmRegistry.h

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src/corelibs/U2Algorithm/src/util_msa_consensus/MSAConsensusAlgorithmStrict.h

src/corelibs/U2Algorithm/src/util_msa_consensus/MSAConsensusUtils.cpp

src/corelibs/U2Algorithm/src/util_msa_consensus/MSAConsensusUtils.h

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src/corelibs/U2Algorithm/src/util_msa_distance/BuiltInDistanceAlgorithms.cpp

src/corelibs/U2Algorithm/src/util_msa_distance/BuiltInDistanceAlgorithms.h

src/corelibs/U2Algorithm/src/util_msa_distance/MSADistanceAlgorithm.cpp

src/corelibs/U2Algorithm/src/util_msa_distance/MSADistanceAlgorithm.h

src/corelibs/U2Algorithm/src/util_msa_distance/MSADistanceAlgorithmHamming.cpp

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src/corelibs/U2Algorithm/src/util_msa_distance/MSADistanceAlgorithmHammingRevCompl.cpp

src/corelibs/U2Algorithm/src/util_msa_distance/MSADistanceAlgorithmHammingRevCompl.h

src/corelibs/U2Algorithm/src/util_msa_distance/MSADistanceAlgorithmRegistry.cpp

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src/corelibs/U2Algorithm/src/util_msaedit/MAlignmentUtilTasks.h

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src/corelibs/U2Algorithm/src/util_weight_matrix/BuiltInPWMConversionAlgorithms.cpp

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src/corelibs/U2Core/src/datatype/DNAAlphabetRegistryImpl.cpp

src/corelibs/U2Core/src/datatype/DNAAlphabetRegistryImpl.h

src/corelibs/U2Core/src/datatype/DNAAlphabetUtils.h

src/corelibs/U2Core/src/datatype/DNAChromatogram.h

src/corelibs/U2Core/src/datatype/DNAInfo.cpp

src/corelibs/U2Core/src/datatype/DNAInfo.h

src/corelibs/U2Core/src/datatype/DNAQuality.cpp

src/corelibs/U2Core/src/datatype/DNAQuality.h

src/corelibs/U2Core/src/datatype/DNASequence.cpp

src/corelibs/U2Core/src/datatype/DNASequence.h

src/corelibs/U2Core/src/datatype/DNATranslation.cpp

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src/corelibs/U2Core/src/datatype/DNATranslationImpl.cpp

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src/corelibs/U2View/src/util_ov_annotated_dna/ADVSingleSequenceWidget.cpp

src/corelibs/U2View/src/util_ov_annotated_dna/ADVSingleSequenceWidget.h

src/corelibs/U2View/src/util_ov_annotated_dna/ADVSplitWidget.cpp

src/corelibs/U2View/src/util_ov_annotated_dna/ADVSplitWidget.h

src/corelibs/U2View/src/util_ov_annotated_dna/ADVSyncViewManager.cpp

src/corelibs/U2View/src/util_ov_annotated_dna/ADVSyncViewManager.h

src/corelibs/U2View/src/util_ov_annotated_dna/ADVUtils.cpp

src/corelibs/U2View/src/util_ov_annotated_dna/ADVUtils.h

src/corelibs/U2View/src/util_ov_annotated_dna/AnnotatedDNAView.cpp

src/corelibs/U2View/src/util_ov_annotated_dna/AnnotatedDNAView.h

src/corelibs/U2View/src/util_ov_annotated_dna/AnnotatedDNAViewFactory.cpp

src/corelibs/U2View/src/util_ov_annotated_dna/AnnotatedDNAViewFactory.h

src/corelibs/U2View/src/util_ov_annotated_dna/AnnotatedDNAViewState.cpp

src/corelibs/U2View/src/util_ov_annotated_dna/AnnotatedDNAViewState.h

src/corelibs/U2View/src/util_ov_annotated_dna/AnnotatedDNAViewTasks.cpp

src/corelibs/U2View/src/util_ov_annotated_dna/AnnotatedDNAViewTasks.h

src/corelibs/U2View/src/util_ov_annotated_dna/AnnotationsTreeModel.cpp

src/corelibs/U2View/src/util_ov_annotated_dna/AnnotationsTreeModel.h

src/corelibs/U2View/src/util_ov_annotated_dna/AnnotationsTreeView.cpp

src/corelibs/U2View/src/util_ov_annotated_dna/AnnotationsTreeView.h

src/corelibs/U2View/src/util_ov_annotated_dna/AnnotationsTreeViewL.cpp

src/corelibs/U2View/src/util_ov_annotated_dna/AnnotationsTreeViewL.h

src/corelibs/U2View/src/util_ov_annotated_dna/AutoAnnotationUtils.cpp

src/corelibs/U2View/src/util_ov_annotated_dna/AutoAnnotationUtils.h

src/corelibs/U2View/src/util_ov_annotated_dna/CreateRulerDialogController.cpp

src/corelibs/U2View/src/util_ov_annotated_dna/CreateRulerDialogController.h

src/corelibs/U2View/src/util_ov_annotated_dna/DetView.cpp

src/corelibs/U2View/src/util_ov_annotated_dna/DetView.h

src/corelibs/U2View/src/util_ov_annotated_dna/EditAnnotationDialogController.cpp

src/corelibs/U2View/src/util_ov_annotated_dna/EditAnnotationDialogController.h

src/corelibs/U2View/src/util_ov_annotated_dna/GSequenceGraphView.cpp

src/corelibs/U2View/src/util_ov_annotated_dna/GSequenceGraphView.h

src/corelibs/U2View/src/util_ov_annotated_dna/GSequenceLineView.cpp

src/corelibs/U2View/src/util_ov_annotated_dna/GSequenceLineView.h

src/corelibs/U2View/src/util_ov_annotated_dna/GSequenceLineViewAnnotated.cpp

src/corelibs/U2View/src/util_ov_annotated_dna/GSequenceLineViewAnnotated.h

src/corelibs/U2View/src/util_ov_annotated_dna/Overview.cpp

src/corelibs/U2View/src/util_ov_annotated_dna/Overview.h

src/corelibs/U2View/src/util_ov_annotated_dna/PanView.cpp

src/corelibs/U2View/src/util_ov_annotated_dna/PanView.h

src/corelibs/U2View/src/util_ov_annotated_dna/PanViewRows.cpp

src/corelibs/U2View/src/util_ov_annotated_dna/PanViewRows.h

src/corelibs/U2View/src/util_ov_annotated_dna/WindowStepSelectorWidget.cpp

src/corelibs/U2View/src/util_ov_annotated_dna/WindowStepSelectorWidget.h

src/corelibs/U2View/src/util_ov_annotated_dna/ui/

src/corelibs/U2View/src/util_ov_annotated_dna/ui/CreateRulerDialog.ui

src/corelibs/U2View/src/util_ov_annotated_dna/ui/EditAnnotationDialog.ui

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src/corelibs/U2View/src/util_ov_indexview/CreateFileIndexDialog.h

src/corelibs/U2View/src/util_ov_indexview/UIndexExportToNewFileDialogImpl.cpp

src/corelibs/U2View/src/util_ov_indexview/UIndexExportToNewFileDialogImpl.h

src/corelibs/U2View/src/util_ov_indexview/UIndexSupport.cpp

src/corelibs/U2View/src/util_ov_indexview/UIndexSupport.h

src/corelibs/U2View/src/util_ov_indexview/UIndexViewHeaderItemWidgetImpl.cpp

src/corelibs/U2View/src/util_ov_indexview/UIndexViewHeaderItemWidgetImpl.h

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src/corelibs/U2View/src/util_ov_indexview/UIndexViewWidgetImpl.h

src/corelibs/U2View/src/util_ov_indexview/UIndexViewWidgetKey.cpp

src/corelibs/U2View/src/util_ov_indexview/UIndexViewWidgetKey.h

src/corelibs/U2View/src/util_ov_indexview/UIndexViewer.cpp

src/corelibs/U2View/src/util_ov_indexview/UIndexViewer.h

src/corelibs/U2View/src/util_ov_indexview/UIndexViewerFactory.cpp

src/corelibs/U2View/src/util_ov_indexview/UIndexViewerFactory.h

src/corelibs/U2View/src/util_ov_indexview/UIndexViewerTasks.cpp

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src/corelibs/U2View/src/util_ov_indexview/ui/CreateFileIndexDialog.ui

src/corelibs/U2View/src/util_ov_indexview/ui/UIndexExportToNewFileDialog.ui

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src/corelibs/U2View/src/util_ov_msaedit/AlignmentLogo.cpp

src/corelibs/U2View/src/util_ov_msaedit/AlignmentLogo.h

src/corelibs/U2View/src/util_ov_msaedit/ConsensusSelectorDialogController.cpp

src/corelibs/U2View/src/util_ov_msaedit/ConsensusSelectorDialogController.h

src/corelibs/U2View/src/util_ov_msaedit/CreateSubalignimentDialogController.cpp

src/corelibs/U2View/src/util_ov_msaedit/CreateSubalignimentDialogController.h

src/corelibs/U2View/src/util_ov_msaedit/DeleteGapsDialog.cpp

src/corelibs/U2View/src/util_ov_msaedit/DeleteGapsDialog.h

src/corelibs/U2View/src/util_ov_msaedit/MSAColorScheme.cpp

src/corelibs/U2View/src/util_ov_msaedit/MSAColorScheme.h

src/corelibs/U2View/src/util_ov_msaedit/MSAEditor.cpp

src/corelibs/U2View/src/util_ov_msaedit/MSAEditor.h

src/corelibs/U2View/src/util_ov_msaedit/MSAEditorBaseOffsetsCache.cpp

src/corelibs/U2View/src/util_ov_msaedit/MSAEditorBaseOffsetsCache.h

src/corelibs/U2View/src/util_ov_msaedit/MSAEditorConsensusArea.cpp

src/corelibs/U2View/src/util_ov_msaedit/MSAEditorConsensusArea.h

src/corelibs/U2View/src/util_ov_msaedit/MSAEditorConsensusCache.cpp

src/corelibs/U2View/src/util_ov_msaedit/MSAEditorConsensusCache.h

src/corelibs/U2View/src/util_ov_msaedit/MSAEditorFactory.cpp

src/corelibs/U2View/src/util_ov_msaedit/MSAEditorFactory.h

src/corelibs/U2View/src/util_ov_msaedit/MSAEditorNameList.cpp

src/corelibs/U2View/src/util_ov_msaedit/MSAEditorNameList.h

src/corelibs/U2View/src/util_ov_msaedit/MSAEditorOffsetsView.cpp

src/corelibs/U2View/src/util_ov_msaedit/MSAEditorOffsetsView.h

src/corelibs/U2View/src/util_ov_msaedit/MSAEditorSequenceArea.cpp

src/corelibs/U2View/src/util_ov_msaedit/MSAEditorSequenceArea.h

src/corelibs/U2View/src/util_ov_msaedit/MSAEditorState.cpp

src/corelibs/U2View/src/util_ov_msaedit/MSAEditorState.h

src/corelibs/U2View/src/util_ov_msaedit/MSAEditorStatusBar.cpp

src/corelibs/U2View/src/util_ov_msaedit/MSAEditorStatusBar.h

src/corelibs/U2View/src/util_ov_msaedit/MSAEditorTasks.cpp

src/corelibs/U2View/src/util_ov_msaedit/MSAEditorTasks.h

src/corelibs/U2View/src/util_ov_msaedit/MSAEditorUndoFramework.cpp

src/corelibs/U2View/src/util_ov_msaedit/MSAEditorUndoFramework.h

src/corelibs/U2View/src/util_ov_msaedit/ui/

src/corelibs/U2View/src/util_ov_msaedit/ui/ConsensusSelectorDialog.ui

src/corelibs/U2View/src/util_ov_msaedit/ui/CreateSubalignimentDialog.ui

src/corelibs/U2View/src/util_ov_msaedit/ui/DeleteGapsDialog.ui

src/corelibs/U2View/src/util_ov_phyltree/

src/corelibs/U2View/src/util_ov_phyltree/CreateBranchesTask.h

src/corelibs/U2View/src/util_ov_phyltree/CreateCircularBranchesTask.cpp

src/corelibs/U2View/src/util_ov_phyltree/CreateCircularBranchesTask.h

src/corelibs/U2View/src/util_ov_phyltree/CreateRectangularBranchesTask.cpp

src/corelibs/U2View/src/util_ov_phyltree/CreateRectangularBranchesTask.h

src/corelibs/U2View/src/util_ov_phyltree/CreateUnrootedBranchesTask.cpp

src/corelibs/U2View/src/util_ov_phyltree/CreateUnrootedBranchesTask.h

src/corelibs/U2View/src/util_ov_phyltree/GraphicsBranchItem.cpp

src/corelibs/U2View/src/util_ov_phyltree/GraphicsBranchItem.h

src/corelibs/U2View/src/util_ov_phyltree/GraphicsButtonItem.cpp

src/corelibs/U2View/src/util_ov_phyltree/GraphicsButtonItem.h

src/corelibs/U2View/src/util_ov_phyltree/GraphicsCircularBranchItem.cpp

src/corelibs/U2View/src/util_ov_phyltree/GraphicsCircularBranchItem.h

src/corelibs/U2View/src/util_ov_phyltree/GraphicsRectangularBranchItem.cpp

src/corelibs/U2View/src/util_ov_phyltree/GraphicsRectangularBranchItem.h

src/corelibs/U2View/src/util_ov_phyltree/GraphicsUnrootedBranchItem.cpp

src/corelibs/U2View/src/util_ov_phyltree/GraphicsUnrootedBranchItem.h

src/corelibs/U2View/src/util_ov_phyltree/TreeViewer.cpp

src/corelibs/U2View/src/util_ov_phyltree/TreeViewer.h

src/corelibs/U2View/src/util_ov_phyltree/TreeViewerFactory.cpp

src/corelibs/U2View/src/util_ov_phyltree/TreeViewerFactory.h

src/corelibs/U2View/src/util_ov_phyltree/TreeViewerState.cpp

src/corelibs/U2View/src/util_ov_phyltree/TreeViewerState.h

src/corelibs/U2View/src/util_ov_phyltree/TreeViewerTasks.cpp

src/corelibs/U2View/src/util_ov_phyltree/TreeViewerTasks.h

src/corelibs/U2View/src/util_ov_phyltree/TreeViewerUtils.cpp

src/corelibs/U2View/src/util_ov_phyltree/TreeViewerUtils.h

src/corelibs/U2View/src/util_ov_textview/

src/corelibs/U2View/src/util_ov_textview/SimpleTextObjectView.cpp

src/corelibs/U2View/src/util_ov_textview/SimpleTextObjectView.h

src/corelibs/U2View/src/util_ov_textview/SimpleTextObjectViewTasks.cpp

src/corelibs/U2View/src/util_ov_textview/SimpleTextObjectViewTasks.h

src/corelibs/U2View/src/util_sec_struct_predict/

src/corelibs/U2View/src/util_sec_struct_predict/SecStructDialog.cpp

src/corelibs/U2View/src/util_sec_struct_predict/SecStructDialog.h

src/corelibs/U2View/src/util_sec_struct_predict/SecStructPredictUtils.cpp

src/corelibs/U2View/src/util_sec_struct_predict/SecStructPredictUtils.h

src/corelibs/U2View/src/util_sec_struct_predict/ui/

src/corelibs/U2View/src/util_sec_struct_predict/ui/SecStructDialog.ui

src/corelibs/U2View/src/util_smith_waterman/

src/corelibs/U2View/src/util_smith_waterman/SmithWatermanDialog.cpp

src/corelibs/U2View/src/util_smith_waterman/SmithWatermanDialog.h

src/corelibs/U2View/src/util_smith_waterman/SmithWatermanDialogImpl.h

src/corelibs/U2View/src/util_smith_waterman/SubstMatrixDialog.cpp

src/corelibs/U2View/src/util_smith_waterman/SubstMatrixDialog.h

src/corelibs/U2View/src/util_smith_waterman/ui/

src/corelibs/U2View/src/util_smith_waterman/ui/SmithWatermanDialogBase.ui

src/corelibs/U2View/src/util_smith_waterman/ui/SubstMatrixDialogBase.ui

src/corelibs/U2View/transl/

src/corelibs/U2View/transl/czech.ts

src/corelibs/U2View/transl/english.ts

src/corelibs/U2View/transl/russian.ts

src/gen_bin_script.cmd

src/include/U2Algorithm/

src/include/U2Algorithm/BinaryFindOpenCL.h

src/include/U2Algorithm/BitsTable.h

src/include/U2Algorithm/BuiltInConsensusAlgorithms.h

src/include/U2Algorithm/BuiltInDistanceAlgorithms.h

src/include/U2Algorithm/BuiltInPWMConversionAlgorithms.h

src/include/U2Algorithm/CDSearchTaskFactory.h

src/include/U2Algorithm/CDSearchTaskFactoryRegistry.h

src/include/U2Algorithm/CreatePhyTreeSettings.h

src/include/U2Algorithm/CreateSubalignmentTask.h

src/include/U2Algorithm/CudaGpuRegistry.h

src/include/U2Algorithm/DnaAssemblyAlgRegistry.h

src/include/U2Algorithm/DnaAssemblyMultiTask.h

src/include/U2Algorithm/DnaAssemblyTask.h

src/include/U2Algorithm/DynTable.h

src/include/U2Algorithm/EnzymeModel.h

src/include/U2Algorithm/FindAlgorithm.h

src/include/U2Algorithm/FindAlgorithmTask.h

src/include/U2Algorithm/GeomUtils.h

src/include/U2Algorithm/MAlignmentUtilTasks.h

src/include/U2Algorithm/MSAAlignAlgRegistry.h

src/include/U2Algorithm/MSAAlignTask.h

src/include/U2Algorithm/MSAConsensusAlgorithm.h

src/include/U2Algorithm/MSAConsensusAlgorithmClustal.h

src/include/U2Algorithm/MSAConsensusAlgorithmDefault.h

src/include/U2Algorithm/MSAConsensusAlgorithmLevitsky.h

src/include/U2Algorithm/MSAConsensusAlgorithmRegistry.h

src/include/U2Algorithm/MSAConsensusAlgorithmStrict.h

src/include/U2Algorithm/MSAConsensusUtils.h

src/include/U2Algorithm/MSADistanceAlgorithm.h

src/include/U2Algorithm/MSADistanceAlgorithmHamming.h

src/include/U2Algorithm/MSADistanceAlgorithmHammingRevCompl.h

src/include/U2Algorithm/MSADistanceAlgorithmRegistry.h

src/include/U2Algorithm/MolecularSurface.h

src/include/U2Algorithm/MolecularSurfaceFactoryRegistry.h

src/include/U2Algorithm/ORFAlgorithmTask.h

src/include/U2Algorithm/ORFFinder.h

src/include/U2Algorithm/OpenCLGpuRegistry.h

src/include/U2Algorithm/OpenCLHelper.h

src/include/U2Algorithm/OpenCLUtils.h

src/include/U2Algorithm/PWMConversionAlgorithm.h

src/include/U2Algorithm/PWMConversionAlgorithmBVH.h

src/include/U2Algorithm/PWMConversionAlgorithmLOD.h

src/include/U2Algorithm/PWMConversionAlgorithmMCH.h

src/include/U2Algorithm/PWMConversionAlgorithmNLG.h

src/include/U2Algorithm/PWMConversionAlgorithmRegistry.h

src/include/U2Algorithm/PhyTreeGenerator.h

src/include/U2Algorithm/PhyTreeGeneratorRegistry.h

src/include/U2Algorithm/PhyTreeGeneratorTask.h

src/include/U2Algorithm/RepeatFinderSettings.h

src/include/U2Algorithm/RepeatFinderTaskFactory.h

src/include/U2Algorithm/RepeatFinderTaskFactoryRegistry.h

src/include/U2Algorithm/RollingArray.h

src/include/U2Algorithm/RollingMatrix.h

src/include/U2Algorithm/SArrayBasedFindTask.h

src/include/U2Algorithm/SArrayIndex.h

src/include/U2Algorithm/SArrayIndexSerializer.h

src/include/U2Algorithm/SWResultFilterRegistry.h

src/include/U2Algorithm/SecStructPredictAlgRegistry.h

src/include/U2Algorithm/SecStructPredictTask.h

src/include/U2Algorithm/SmithWatermanReportCallback.h

src/include/U2Algorithm/SmithWatermanResult.h

src/include/U2Algorithm/SmithWatermanResultFilters.h

src/include/U2Algorithm/SmithWatermanSettings.h

src/include/U2Algorithm/SmithWatermanTaskFactory.h

src/include/U2Algorithm/SmithWatermanTaskFactoryRegistry.h

src/include/U2Algorithm/SmithWatermanUtil.h

src/include/U2Algorithm/StructuralAlignmentAlgorithm.h

src/include/U2Algorithm/StructuralAlignmentAlgorithmFactory.h

src/include/U2Algorithm/StructuralAlignmentAlgorithmRegistry.h

src/include/U2Algorithm/SubstMatrixRegistry.h

src/include/U2Algorithm/VanDerWaalsSurface.h

src/include/U2Algorithm/cl.h

src/include/U2Algorithm/cl_platform.h

src/include/U2Core/

src/include/U2Core/AddDocumentTask.h

src/include/U2Core/AddPartToSequenceTask.h

src/include/U2Core/AddSequencesToAlignmentTask.h

src/include/U2Core/AnnotationData.h

src/include/U2Core/AnnotationSelection.h

src/include/U2Core/AnnotationSettings.h

src/include/U2Core/AnnotationTableObject.h

src/include/U2Core/AppContext.h

src/include/U2Core/AppGlobalObject.h

src/include/U2Core/AppResources.h

src/include/U2Core/AppSettings.h

src/include/U2Core/AssemblyObject.h

src/include/U2Core/AutoAnnotationsSupport.h

src/include/U2Core/BaseDocumentFormats.h

src/include/U2Core/BioStruct3D.h

src/include/U2Core/BioStruct3DObject.h

src/include/U2Core/CMDLineCoreOptions.h

src/include/U2Core/CMDLineHelpProvider.h

src/include/U2Core/CMDLineRegistry.h

src/include/U2Core/CMDLineUtils.h

src/include/U2Core/CopyDataTask.h

src/include/U2Core/Counter.h

src/include/U2Core/CreateAnnotationTask.h

src/include/U2Core/CreateFileIndexTask.h

src/include/U2Core/DBXRefRegistry.h

src/include/U2Core/DIProperties.h

src/include/U2Core/DNAAlphabet.h

src/include/U2Core/DNAAlphabetRegistryImpl.h

src/include/U2Core/DNAAlphabetUtils.h

src/include/U2Core/DNAChromatogram.h

src/include/U2Core/DNAChromatogramObject.h

src/include/U2Core/DNAInfo.h

src/include/U2Core/DNAQuality.h

src/include/U2Core/DNASequence.h

src/include/U2Core/DNASequenceObject.h

src/include/U2Core/DNASequenceSelection.h

src/include/U2Core/DNATranslation.h

src/include/U2Core/DNATranslationImpl.h

src/include/U2Core/DataBaseRegistry.h

src/include/U2Core/DbiDocumentFormat.h

src/include/U2Core/DocumentFormatConfigurators.h

src/include/U2Core/DocumentImport.h

src/include/U2Core/DocumentModel.h

src/include/U2Core/DocumentSelection.h

src/include/U2Core/DocumentUtils.h

src/include/U2Core/ExportToNewFileFromIndexTask.h

src/include/U2Core/ExternalToolRegistry.h

src/include/U2Core/ExtractAnnotatedRegionTask.h

src/include/U2Core/FailTask.h

src/include/U2Core/FeatureColors.h

src/include/U2Core/FormatUtils.h

src/include/U2Core/GAutoDeleteList.h

src/include/U2Core/GHints.h

src/include/U2Core/GObject.h

src/include/U2Core/GObjectReference.h

src/include/U2Core/GObjectRelationRoles.h

src/include/U2Core/GObjectSelection.h

src/include/U2Core/GObjectTypes.h

src/include/U2Core/GObjectUtils.h

src/include/U2Core/GUrl.h

src/include/U2Core/GUrlUtils.h

src/include/U2Core/GetDocumentFromIndexTask.h

src/include/U2Core/HttpFileAdapter.h

src/include/U2Core/IOAdapter.h

src/include/U2Core/IdRegistry.h

src/include/U2Core/Identifiable.h

src/include/U2Core/L10n.h

src/include/U2Core/LRegion.h

src/include/U2Core/LRegionsSelection.h

src/include/U2Core/LoadDocumentTask.h

src/include/U2Core/LoadRemoteDocumentTask.h

src/include/U2Core/LocalFileAdapter.h

src/include/U2Core/Log.h

src/include/U2Core/LogCache.h

src/include/U2Core/MAlignment.h

src/include/U2Core/MAlignmentInfo.h

src/include/U2Core/MAlignmentObject.h

src/include/U2Core/MSAUtils.h

src/include/U2Core/Matrix44.h

src/include/U2Core/MultiTask.h

src/include/U2Core/NetworkConfiguration.h

src/include/U2Core/PFMatrix.h

src/include/U2Core/PWMatrix.h

src/include/U2Core/PhyTree.h

src/include/U2Core/PhyTreeObject.h

src/include/U2Core/PluginModel.h

src/include/U2Core/ProjectModel.h

src/include/U2Core/ProjectService.h

src/include/U2Core/QVariantUtils.h

src/include/U2Core/RemoveAnnotationsTask.h

src/include/U2Core/RemoveDocumentTask.h

src/include/U2Core/RemovePartFromSequenceTask.h

src/include/U2Core/ReplacePartOfSequenceTask.h

src/include/U2Core/ResourceTracker.h

src/include/U2Core/ReverseSequenceTask.h

src/include/U2Core/RingBuffer.h

src/include/U2Core/SMatrix.h

src/include/U2Core/SaveDocumentStreamingTask.h

src/include/U2Core/SaveDocumentTask.h

src/include/U2Core/ScriptTask.h

src/include/U2Core/SelectionModel.h

src/include/U2Core/SelectionTypes.h

src/include/U2Core/SelectionUtils.h

src/include/U2Core/SequenceUtils.h

src/include/U2Core/SequenceWalkerTask.h

src/include/U2Core/ServiceModel.h

src/include/U2Core/ServiceTypes.h

src/include/U2Core/Settings.h

src/include/U2Core/StateLockableDataModel.h

src/include/U2Core/TLSTask.h

src/include/U2Core/Task.h

src/include/U2Core/TaskSignalMapper.h

src/include/U2Core/TaskStarter.h

src/include/U2Core/TextObject.h

src/include/U2Core/TextSelection.h

src/include/U2Core/TextUtils.h

src/include/U2Core/Timer.h

src/include/U2Core/U2AbstractDbi.h

src/include/U2Core/U2Alphabet.h

src/include/U2Core/U2Annotation.h

src/include/U2Core/U2AnnotationUtils.h

src/include/U2Core/U2AnnotationsDbi.h

src/include/U2Core/U2Assembly.h

src/include/U2Core/U2AssemblyDbi.h

src/include/U2Core/U2AssemblyUtils.h

src/include/U2Core/U2Attribute.h

src/include/U2Core/U2AttributeDbi.h

src/include/U2Core/U2AttributeUtils.h

src/include/U2Core/U2Bits.h

src/include/U2Core/U2CoreAttributes.h

src/include/U2Core/U2CrossDatabaseReferenceDbi.h

src/include/U2Core/U2Dbi.h

src/include/U2Core/U2DbiRegistry.h

src/include/U2Core/U2DbiUtils.h

src/include/U2Core/U2Msa.h

src/include/U2Core/U2MsaDbi.h

src/include/U2Core/U2ObjectDbi.h

src/include/U2Core/U2OpStatus.h

src/include/U2Core/U2OpStatusUtils.h

src/include/U2Core/U2Range.h

src/include/U2Core/U2Region.h

src/include/U2Core/U2SafePoints.h

src/include/U2Core/U2Sequence.h

src/include/U2Core/U2SequenceDbi.h

src/include/U2Core/U2SqlHelpers.h

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src/include/U2Core/UserApplicationsSettings.h

src/include/U2Core/VFSAdapter.h

src/include/U2Core/Vector3D.h

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src/include/U2Designer/WorkflowGUIUtils.h

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src/include/U2Formats/ABIFormat.h

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src/include/U2Formats/ClustalWAlnFormat.h

src/include/U2Formats/ConvertAssemblyToSamTask.h

src/include/U2Formats/DocumentFormatUtils.h

src/include/U2Formats/DocumentFormats.h

src/include/U2Formats/EMBLGenbankAbstractDocument.h

src/include/U2Formats/EMBLPlainTextFormat.h

src/include/U2Formats/FastaFormat.h

src/include/U2Formats/FastqFormat.h

src/include/U2Formats/GFFFormat.h

src/include/U2Formats/GenbankFeatures.h

src/include/U2Formats/GenbankLocationParser.h

src/include/U2Formats/GenbankPlainTextFormat.h

src/include/U2Formats/IndexFormat.h

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src/include/U2Formats/PlainTextFormat.h

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src/include/U2Formats/SAMFormat.h

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src/include/U2View/AnnotatedDNAViewState.h

src/include/U2View/AnnotatedDNAViewTasks.h

src/include/U2View/AnnotationsTreeView.h

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src/include/U2View/DeleteGapsDialog.h

src/include/U2View/DetView.h

src/include/U2View/DnaAssemblyDialog.h

src/include/U2View/DnaAssemblyGUIExtension.h

src/include/U2View/DnaAssemblyUtils.h

src/include/U2View/EditAnnotationDialogController.h

src/include/U2View/FindDialog.h

src/include/U2View/GSequenceGraphView.h

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src/include/U2View/GraphicsUnrootedBranchItem.h

src/include/U2View/MSAAlignDialog.h

src/include/U2View/MSAAlignGUIExtension.h

src/include/U2View/MSAColorScheme.h

src/include/U2View/MSAEditor.h

src/include/U2View/MSAEditorBaseOffsetsCache.h

src/include/U2View/MSAEditorConsensusArea.h

src/include/U2View/MSAEditorConsensusCache.h

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src/include/U2View/MSAEditorNameList.h

src/include/U2View/MSAEditorOffsetsView.h

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src/include/U2View/MSAEditorState.h

src/include/U2View/MSAEditorStatusBar.h

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src/include/U2View/MSAEditorUndoFramework.h

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src/include/U2View/SmithWatermanDialog.h

src/include/U2View/SubstMatrixDialog.h

src/include/U2View/TextSettingsDialog.h

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src/libs_3rdparty/qtbindings_core/src/qtscriptshell_QIODevice.cpp

src/libs_3rdparty/qtbindings_core/src/qtscriptshell_QIODevice.h

src/libs_3rdparty/qtbindings_core/src/qtscriptshell_QObject.cpp

src/libs_3rdparty/qtbindings_core/src/qtscriptshell_QObject.h

src/libs_3rdparty/qtbindings_core/src/qtscriptshell_QProcess.cpp

src/libs_3rdparty/qtbindings_core/src/qtscriptshell_QProcess.h

src/libs_3rdparty/qtbindings_core/src/qtscriptshell_QRunnable.cpp

src/libs_3rdparty/qtbindings_core/src/qtscriptshell_QRunnable.h

src/libs_3rdparty/qtbindings_core/src/qtscriptshell_QSettings.cpp

src/libs_3rdparty/qtbindings_core/src/qtscriptshell_QSettings.h

src/libs_3rdparty/qtbindings_core/src/qtscriptshell_QSignalMapper.cpp

src/libs_3rdparty/qtbindings_core/src/qtscriptshell_QSignalMapper.h

src/libs_3rdparty/qtbindings_core/src/qtscriptshell_QSocketNotifier.cpp

src/libs_3rdparty/qtbindings_core/src/qtscriptshell_QSocketNotifier.h

src/libs_3rdparty/qtbindings_core/src/qtscriptshell_QTemporaryFile.cpp

src/libs_3rdparty/qtbindings_core/src/qtscriptshell_QTemporaryFile.h

src/libs_3rdparty/qtbindings_core/src/qtscriptshell_QTextCodec.cpp

src/libs_3rdparty/qtbindings_core/src/qtscriptshell_QTextCodec.h

src/libs_3rdparty/qtbindings_core/src/qtscriptshell_QTextStream.cpp

src/libs_3rdparty/qtbindings_core/src/qtscriptshell_QTextStream.h

src/libs_3rdparty/qtbindings_core/src/qtscriptshell_QThreadPool.cpp

src/libs_3rdparty/qtbindings_core/src/qtscriptshell_QThreadPool.h

src/libs_3rdparty/qtbindings_core/src/qtscriptshell_QTimeLine.cpp

src/libs_3rdparty/qtbindings_core/src/qtscriptshell_QTimeLine.h

src/libs_3rdparty/qtbindings_core/src/qtscriptshell_QTimer.cpp

src/libs_3rdparty/qtbindings_core/src/qtscriptshell_QTimer.h

src/libs_3rdparty/qtbindings_core/src/qtscriptshell_QTimerEvent.cpp

src/libs_3rdparty/qtbindings_core/src/qtscriptshell_QTimerEvent.h

src/libs_3rdparty/qtbindings_core/src/qtscriptshell_QTranslator.cpp

src/libs_3rdparty/qtbindings_core/src/qtscriptshell_QTranslator.h

src/libs_3rdparty/qtbindings_core/src/qtscriptshell_QUuid.cpp

src/libs_3rdparty/qtbindings_core/src/qtscriptshell_QUuid.h

src/libs_3rdparty/qtbindings_core/src/qtscriptshell_QXmlStreamAttributes.cpp

src/libs_3rdparty/qtbindings_core/src/qtscriptshell_QXmlStreamAttributes.h

src/libs_3rdparty/qtbindings_core/src/qtscriptshell_QXmlStreamEntityResolver.cpp

src/libs_3rdparty/qtbindings_core/src/qtscriptshell_QXmlStreamEntityResolver.h

src/libs_3rdparty/qtbindings_gui/

src/libs_3rdparty/qtbindings_gui/qtbindings_gui.pri

src/libs_3rdparty/qtbindings_gui/qtbindings_gui.pro

src/libs_3rdparty/qtbindings_gui/src/

src/libs_3rdparty/qtbindings_gui/src/com_trolltech_qt_gui.pri

src/libs_3rdparty/qtbindings_gui/src/main.cpp

src/libs_3rdparty/qtbindings_gui/src/qtscript_QAbstractButton.cpp

src/libs_3rdparty/qtbindings_gui/src/qtscript_QAbstractGraphicsShapeItem.cpp

src/libs_3rdparty/qtbindings_gui/src/qtscript_QAbstractItemDelegate.cpp

src/libs_3rdparty/qtbindings_gui/src/qtscript_QAbstractItemView.cpp

src/libs_3rdparty/qtbindings_gui/src/qtscript_QAbstractPageSetupDialog.cpp

src/libs_3rdparty/qtbindings_gui/src/qtscript_QAbstractPrintDialog.cpp

src/libs_3rdparty/qtbindings_gui/src/qtscript_QAbstractScrollArea.cpp

src/libs_3rdparty/qtbindings_gui/src/qtscript_QAbstractSlider.cpp

src/libs_3rdparty/qtbindings_gui/src/qtscript_QAbstractSpinBox.cpp

src/libs_3rdparty/qtbindings_gui/src/qtscript_QAccessible.cpp

src/libs_3rdparty/qtbindings_gui/src/qtscript_QAccessible2Interface.cpp

src/libs_3rdparty/qtbindings_gui/src/qtscript_QAccessibleBridge.cpp

src/libs_3rdparty/qtbindings_gui/src/qtscript_QAccessibleEvent.cpp

src/libs_3rdparty/qtbindings_gui/src/qtscript_QAccessibleInterface.cpp

src/libs_3rdparty/qtbindings_gui/src/qtscript_QAccessibleInterfaceEx.cpp

src/libs_3rdparty/qtbindings_gui/src/qtscript_QAccessibleObject.cpp

src/libs_3rdparty/qtbindings_gui/src/qtscript_QAccessibleObjectEx.cpp

src/libs_3rdparty/qtbindings_gui/src/qtscript_QAccessiblePlugin.cpp

src/libs_3rdparty/qtbindings_gui/src/qtscript_QAccessibleTableInterface.cpp

src/libs_3rdparty/qtbindings_gui/src/qtscript_QAccessibleWidget.cpp

src/libs_3rdparty/qtbindings_gui/src/qtscript_QAccessibleWidgetEx.cpp

src/libs_3rdparty/qtbindings_gui/src/qtscript_QAction.cpp

src/libs_3rdparty/qtbindings_gui/src/qtscript_QActionEvent.cpp

src/libs_3rdparty/qtbindings_gui/src/qtscript_QActionGroup.cpp

src/libs_3rdparty/qtbindings_gui/src/qtscript_QApplication.cpp

src/libs_3rdparty/qtbindings_gui/src/qtscript_QBitmap.cpp

src/libs_3rdparty/qtbindings_gui/src/qtscript_QBoxLayout.cpp

src/libs_3rdparty/qtbindings_gui/src/qtscript_QBrush.cpp

src/libs_3rdparty/qtbindings_gui/src/qtscript_QButtonGroup.cpp

src/libs_3rdparty/qtbindings_gui/src/qtscript_QCDEStyle.cpp

src/libs_3rdparty/qtbindings_gui/src/qtscript_QCalendarWidget.cpp

src/libs_3rdparty/qtbindings_gui/src/qtscript_QCheckBox.cpp

src/libs_3rdparty/qtbindings_gui/src/qtscript_QCleanlooksStyle.cpp

src/libs_3rdparty/qtbindings_gui/src/qtscript_QClipboard.cpp

src/libs_3rdparty/qtbindings_gui/src/qtscript_QClipboardEvent.cpp

src/libs_3rdparty/qtbindings_gui/src/qtscript_QCloseEvent.cpp

src/libs_3rdparty/qtbindings_gui/src/qtscript_QColor.cpp

src/libs_3rdparty/qtbindings_gui/src/qtscript_QColorDialog.cpp

src/libs_3rdparty/qtbindings_gui/src/qtscript_QColumnView.cpp

src/libs_3rdparty/qtbindings_gui/src/qtscript_QComboBox.cpp

src/libs_3rdparty/qtbindings_gui/src/qtscript_QCommandLinkButton.cpp

src/libs_3rdparty/qtbindings_gui/src/qtscript_QCommonStyle.cpp

src/libs_3rdparty/qtbindings_gui/src/qtscript_QCompleter.cpp

src/libs_3rdparty/qtbindings_gui/src/qtscript_QConicalGradient.cpp

src/libs_3rdparty/qtbindings_gui/src/qtscript_QContextMenuEvent.cpp

src/libs_3rdparty/qtbindings_gui/src/qtscript_QCursor.cpp

src/libs_3rdparty/qtbindings_gui/src/qtscript_QDataWidgetMapper.cpp

src/libs_3rdparty/qtbindings_gui/src/qtscript_QDateEdit.cpp

src/libs_3rdparty/qtbindings_gui/src/qtscript_QDateTimeEdit.cpp

src/libs_3rdparty/qtbindings_gui/src/qtscript_QDesktopServices.cpp

src/libs_3rdparty/qtbindings_gui/src/qtscript_QDesktopWidget.cpp

src/libs_3rdparty/qtbindings_gui/src/qtscript_QDial.cpp

src/libs_3rdparty/qtbindings_gui/src/qtscript_QDialog.cpp

src/libs_3rdparty/qtbindings_gui/src/qtscript_QDialogButtonBox.cpp

src/libs_3rdparty/qtbindings_gui/src/qtscript_QDockWidget.cpp

src/libs_3rdparty/qtbindings_gui/src/qtscript_QDoubleSpinBox.cpp

src/libs_3rdparty/qtbindings_gui/src/qtscript_QDoubleValidator.cpp

src/libs_3rdparty/qtbindings_gui/src/qtscript_QDragEnterEvent.cpp

src/libs_3rdparty/qtbindings_gui/src/qtscript_QDragLeaveEvent.cpp

src/libs_3rdparty/qtbindings_gui/src/qtscript_QDragMoveEvent.cpp

src/libs_3rdparty/qtbindings_gui/src/qtscript_QDragResponseEvent.cpp

src/libs_3rdparty/qtbindings_gui/src/qtscript_QErrorMessage.cpp

src/libs_3rdparty/qtbindings_gui/src/qtscript_QFileDialog.cpp

src/libs_3rdparty/qtbindings_gui/src/qtscript_QFileIconProvider.cpp

src/libs_3rdparty/qtbindings_gui/src/qtscript_QFileOpenEvent.cpp

src/libs_3rdparty/qtbindings_gui/src/qtscript_QFocusEvent.cpp

src/libs_3rdparty/qtbindings_gui/src/qtscript_QFocusFrame.cpp

src/libs_3rdparty/qtbindings_gui/src/qtscript_QFont.cpp

src/libs_3rdparty/qtbindings_gui/src/qtscript_QFontComboBox.cpp

src/libs_3rdparty/qtbindings_gui/src/qtscript_QFontDialog.cpp

src/libs_3rdparty/qtbindings_gui/src/qtscript_QFontInfo.cpp

src/libs_3rdparty/qtbindings_gui/src/qtscript_QFontMetrics.cpp

src/libs_3rdparty/qtbindings_gui/src/qtscript_QFontMetricsF.cpp

src/libs_3rdparty/qtbindings_gui/src/qtscript_QFormLayout.cpp

src/libs_3rdparty/qtbindings_gui/src/qtscript_QFrame.cpp

src/libs_3rdparty/qtbindings_gui/src/qtscript_QGradient.cpp

src/libs_3rdparty/qtbindings_gui/src/qtscript_QGraphicsEllipseItem.cpp

src/libs_3rdparty/qtbindings_gui/src/qtscript_QGraphicsGridLayout.cpp

src/libs_3rdparty/qtbindings_gui/src/qtscript_QGraphicsItem.cpp

src/libs_3rdparty/qtbindings_gui/src/qtscript_QGraphicsItemAnimation.cpp

src/libs_3rdparty/qtbindings_gui/src/qtscript_QGraphicsItemGroup.cpp

src/libs_3rdparty/qtbindings_gui/src/qtscript_QGraphicsLayout.cpp

src/libs_3rdparty/qtbindings_gui/src/qtscript_QGraphicsLayoutItem.cpp

src/libs_3rdparty/qtbindings_gui/src/qtscript_QGraphicsLineItem.cpp

src/libs_3rdparty/qtbindings_gui/src/qtscript_QGraphicsLinearLayout.cpp

src/libs_3rdparty/qtbindings_gui/src/qtscript_QGraphicsPathItem.cpp

src/libs_3rdparty/qtbindings_gui/src/qtscript_QGraphicsPixmapItem.cpp

src/libs_3rdparty/qtbindings_gui/src/qtscript_QGraphicsPolygonItem.cpp

src/libs_3rdparty/qtbindings_gui/src/qtscript_QGraphicsProxyWidget.cpp

src/libs_3rdparty/qtbindings_gui/src/qtscript_QGraphicsRectItem.cpp

src/libs_3rdparty/qtbindings_gui/src/qtscript_QGraphicsScene.cpp

src/libs_3rdparty/qtbindings_gui/src/qtscript_QGraphicsSceneContextMenuEvent.cpp

src/libs_3rdparty/qtbindings_gui/src/qtscript_QGraphicsSceneEvent.cpp

src/libs_3rdparty/qtbindings_gui/src/qtscript_QGraphicsSceneHelpEvent.cpp

src/libs_3rdparty/qtbindings_gui/src/qtscript_QGraphicsSceneHoverEvent.cpp

src/libs_3rdparty/qtbindings_gui/src/qtscript_QGraphicsSceneMouseEvent.cpp

src/libs_3rdparty/qtbindings_gui/src/qtscript_QGraphicsSceneMoveEvent.cpp

src/libs_3rdparty/qtbindings_gui/src/qtscript_QGraphicsSceneResizeEvent.cpp

src/libs_3rdparty/qtbindings_gui/src/qtscript_QGraphicsSceneWheelEvent.cpp

src/libs_3rdparty/qtbindings_gui/src/qtscript_QGraphicsSimpleTextItem.cpp

src/libs_3rdparty/qtbindings_gui/src/qtscript_QGraphicsTextItem.cpp

src/libs_3rdparty/qtbindings_gui/src/qtscript_QGraphicsView.cpp

src/libs_3rdparty/qtbindings_gui/src/qtscript_QGraphicsWidget.cpp

src/libs_3rdparty/qtbindings_gui/src/qtscript_QGridLayout.cpp

src/libs_3rdparty/qtbindings_gui/src/qtscript_QGroupBox.cpp

src/libs_3rdparty/qtbindings_gui/src/qtscript_QHBoxLayout.cpp

src/libs_3rdparty/qtbindings_gui/src/qtscript_QHeaderView.cpp

src/libs_3rdparty/qtbindings_gui/src/qtscript_QHelpEvent.cpp

src/libs_3rdparty/qtbindings_gui/src/qtscript_QHideEvent.cpp

src/libs_3rdparty/qtbindings_gui/src/qtscript_QHoverEvent.cpp

src/libs_3rdparty/qtbindings_gui/src/qtscript_QIcon.cpp

src/libs_3rdparty/qtbindings_gui/src/qtscript_QIconDragEvent.cpp

src/libs_3rdparty/qtbindings_gui/src/qtscript_QIconEngine.cpp

src/libs_3rdparty/qtbindings_gui/src/qtscript_QIconEnginePluginV2.cpp

src/libs_3rdparty/qtbindings_gui/src/qtscript_QImage.cpp

src/libs_3rdparty/qtbindings_gui/src/qtscript_QImageIOHandler.cpp

src/libs_3rdparty/qtbindings_gui/src/qtscript_QImageIOPlugin.cpp

src/libs_3rdparty/qtbindings_gui/src/qtscript_QImageReader.cpp

src/libs_3rdparty/qtbindings_gui/src/qtscript_QImageWriter.cpp

src/libs_3rdparty/qtbindings_gui/src/qtscript_QInputContext.cpp

src/libs_3rdparty/qtbindings_gui/src/qtscript_QInputContextFactory.cpp

src/libs_3rdparty/qtbindings_gui/src/qtscript_QInputContextPlugin.cpp

src/libs_3rdparty/qtbindings_gui/src/qtscript_QInputDialog.cpp

src/libs_3rdparty/qtbindings_gui/src/qtscript_QInputEvent.cpp

src/libs_3rdparty/qtbindings_gui/src/qtscript_QIntValidator.cpp

src/libs_3rdparty/qtbindings_gui/src/qtscript_QItemDelegate.cpp

src/libs_3rdparty/qtbindings_gui/src/qtscript_QItemEditorCreatorBase.cpp

src/libs_3rdparty/qtbindings_gui/src/qtscript_QItemEditorFactory.cpp

src/libs_3rdparty/qtbindings_gui/src/qtscript_QItemSelection.cpp

src/libs_3rdparty/qtbindings_gui/src/qtscript_QKeyEvent.cpp

src/libs_3rdparty/qtbindings_gui/src/qtscript_QKeySequence.cpp

src/libs_3rdparty/qtbindings_gui/src/qtscript_QLCDNumber.cpp

src/libs_3rdparty/qtbindings_gui/src/qtscript_QLabel.cpp

src/libs_3rdparty/qtbindings_gui/src/qtscript_QLayout.cpp

src/libs_3rdparty/qtbindings_gui/src/qtscript_QLayoutItem.cpp

src/libs_3rdparty/qtbindings_gui/src/qtscript_QLine.cpp

src/libs_3rdparty/qtbindings_gui/src/qtscript_QLineEdit.cpp

src/libs_3rdparty/qtbindings_gui/src/qtscript_QLineF.cpp

src/libs_3rdparty/qtbindings_gui/src/qtscript_QLinearGradient.cpp

src/libs_3rdparty/qtbindings_gui/src/qtscript_QListView.cpp

src/libs_3rdparty/qtbindings_gui/src/qtscript_QListWidget.cpp

src/libs_3rdparty/qtbindings_gui/src/qtscript_QListWidgetItem.cpp

src/libs_3rdparty/qtbindings_gui/src/qtscript_QMainWindow.cpp

src/libs_3rdparty/qtbindings_gui/src/qtscript_QMatrix.cpp

src/libs_3rdparty/qtbindings_gui/src/qtscript_QMdiArea.cpp

src/libs_3rdparty/qtbindings_gui/src/qtscript_QMdiSubWindow.cpp

src/libs_3rdparty/qtbindings_gui/src/qtscript_QMenu.cpp

src/libs_3rdparty/qtbindings_gui/src/qtscript_QMenuBar.cpp

src/libs_3rdparty/qtbindings_gui/src/qtscript_QMessageBox.cpp

src/libs_3rdparty/qtbindings_gui/src/qtscript_QMotifStyle.cpp

src/libs_3rdparty/qtbindings_gui/src/qtscript_QMouseEvent.cpp

src/libs_3rdparty/qtbindings_gui/src/qtscript_QMoveEvent.cpp

src/libs_3rdparty/qtbindings_gui/src/qtscript_QMovie.cpp

src/libs_3rdparty/qtbindings_gui/src/qtscript_QPageSetupDialog.cpp

src/libs_3rdparty/qtbindings_gui/src/qtscript_QPaintDevice.cpp

src/libs_3rdparty/qtbindings_gui/src/qtscript_QPaintEngine.cpp

src/libs_3rdparty/qtbindings_gui/src/qtscript_QPaintEngineState.cpp

src/libs_3rdparty/qtbindings_gui/src/qtscript_QPaintEvent.cpp

src/libs_3rdparty/qtbindings_gui/src/qtscript_QPainter.cpp

src/libs_3rdparty/qtbindings_gui/src/qtscript_QPainterPath.cpp

src/libs_3rdparty/qtbindings_gui/src/qtscript_QPainterPathStroker.cpp

src/libs_3rdparty/qtbindings_gui/src/qtscript_QPalette.cpp

src/libs_3rdparty/qtbindings_gui/src/qtscript_QPen.cpp

src/libs_3rdparty/qtbindings_gui/src/qtscript_QPicture.cpp

src/libs_3rdparty/qtbindings_gui/src/qtscript_QPictureFormatPlugin.cpp

src/libs_3rdparty/qtbindings_gui/src/qtscript_QPictureIO.cpp

src/libs_3rdparty/qtbindings_gui/src/qtscript_QPixmap.cpp

src/libs_3rdparty/qtbindings_gui/src/qtscript_QPixmapCache.cpp

src/libs_3rdparty/qtbindings_gui/src/qtscript_QPlainTextDocumentLayout.cpp

src/libs_3rdparty/qtbindings_gui/src/qtscript_QPlainTextEdit.cpp

src/libs_3rdparty/qtbindings_gui/src/qtscript_QPlastiqueStyle.cpp

src/libs_3rdparty/qtbindings_gui/src/qtscript_QPolygon.cpp

src/libs_3rdparty/qtbindings_gui/src/qtscript_QPolygonF.cpp

src/libs_3rdparty/qtbindings_gui/src/qtscript_QPrintDialog.cpp

src/libs_3rdparty/qtbindings_gui/src/qtscript_QPrintEngine.cpp

src/libs_3rdparty/qtbindings_gui/src/qtscript_QPrintPreviewDialog.cpp

src/libs_3rdparty/qtbindings_gui/src/qtscript_QPrintPreviewWidget.cpp

src/libs_3rdparty/qtbindings_gui/src/qtscript_QPrinter.cpp

src/libs_3rdparty/qtbindings_gui/src/qtscript_QProgressBar.cpp

src/libs_3rdparty/qtbindings_gui/src/qtscript_QProgressDialog.cpp

src/libs_3rdparty/qtbindings_gui/src/qtscript_QPushButton.cpp

src/libs_3rdparty/qtbindings_gui/src/qtscript_QRadialGradient.cpp

src/libs_3rdparty/qtbindings_gui/src/qtscript_QRadioButton.cpp

src/libs_3rdparty/qtbindings_gui/src/qtscript_QReadWriteLock.cpp

src/libs_3rdparty/qtbindings_gui/src/qtscript_QRegExpValidator.cpp

src/libs_3rdparty/qtbindings_gui/src/qtscript_QRegion.cpp

src/libs_3rdparty/qtbindings_gui/src/qtscript_QResizeEvent.cpp

src/libs_3rdparty/qtbindings_gui/src/qtscript_QRubberBand.cpp

src/libs_3rdparty/qtbindings_gui/src/qtscript_QScrollArea.cpp

src/libs_3rdparty/qtbindings_gui/src/qtscript_QScrollBar.cpp

src/libs_3rdparty/qtbindings_gui/src/qtscript_QSessionManager.cpp

src/libs_3rdparty/qtbindings_gui/src/qtscript_QShortcut.cpp

src/libs_3rdparty/qtbindings_gui/src/qtscript_QShortcutEvent.cpp

src/libs_3rdparty/qtbindings_gui/src/qtscript_QShowEvent.cpp

src/libs_3rdparty/qtbindings_gui/src/qtscript_QSizeGrip.cpp

src/libs_3rdparty/qtbindings_gui/src/qtscript_QSizePolicy.cpp

src/libs_3rdparty/qtbindings_gui/src/qtscript_QSlider.cpp

src/libs_3rdparty/qtbindings_gui/src/qtscript_QSound.cpp

src/libs_3rdparty/qtbindings_gui/src/qtscript_QSpacerItem.cpp

src/libs_3rdparty/qtbindings_gui/src/qtscript_QSpinBox.cpp

src/libs_3rdparty/qtbindings_gui/src/qtscript_QSplashScreen.cpp

src/libs_3rdparty/qtbindings_gui/src/qtscript_QSplitter.cpp

src/libs_3rdparty/qtbindings_gui/src/qtscript_QSplitterHandle.cpp

src/libs_3rdparty/qtbindings_gui/src/qtscript_QStackedLayout.cpp

src/libs_3rdparty/qtbindings_gui/src/qtscript_QStackedWidget.cpp

src/libs_3rdparty/qtbindings_gui/src/qtscript_QStandardItem.cpp

src/libs_3rdparty/qtbindings_gui/src/qtscript_QStandardItemModel.cpp

src/libs_3rdparty/qtbindings_gui/src/qtscript_QStatusBar.cpp

src/libs_3rdparty/qtbindings_gui/src/qtscript_QStatusTipEvent.cpp

src/libs_3rdparty/qtbindings_gui/src/qtscript_QStringListModel.cpp

src/libs_3rdparty/qtbindings_gui/src/qtscript_QStyle.cpp

src/libs_3rdparty/qtbindings_gui/src/qtscript_QStyleFactory.cpp

src/libs_3rdparty/qtbindings_gui/src/qtscript_QStyleHintReturn.cpp

src/libs_3rdparty/qtbindings_gui/src/qtscript_QStyleHintReturnMask.cpp

src/libs_3rdparty/qtbindings_gui/src/qtscript_QStyleHintReturnVariant.cpp

src/libs_3rdparty/qtbindings_gui/src/qtscript_QStyleOption.cpp

src/libs_3rdparty/qtbindings_gui/src/qtscript_QStyleOptionButton.cpp

src/libs_3rdparty/qtbindings_gui/src/qtscript_QStyleOptionComboBox.cpp

src/libs_3rdparty/qtbindings_gui/src/qtscript_QStyleOptionComplex.cpp

src/libs_3rdparty/qtbindings_gui/src/qtscript_QStyleOptionDockWidget.cpp

src/libs_3rdparty/qtbindings_gui/src/qtscript_QStyleOptionDockWidgetV2.cpp

src/libs_3rdparty/qtbindings_gui/src/qtscript_QStyleOptionFocusRect.cpp

src/libs_3rdparty/qtbindings_gui/src/qtscript_QStyleOptionFrame.cpp

src/libs_3rdparty/qtbindings_gui/src/qtscript_QStyleOptionFrameV2.cpp

src/libs_3rdparty/qtbindings_gui/src/qtscript_QStyleOptionGraphicsItem.cpp

src/libs_3rdparty/qtbindings_gui/src/qtscript_QStyleOptionGroupBox.cpp

src/libs_3rdparty/qtbindings_gui/src/qtscript_QStyleOptionHeader.cpp

src/libs_3rdparty/qtbindings_gui/src/qtscript_QStyleOptionMenuItem.cpp

src/libs_3rdparty/qtbindings_gui/src/qtscript_QStyleOptionProgressBar.cpp

src/libs_3rdparty/qtbindings_gui/src/qtscript_QStyleOptionProgressBarV2.cpp

src/libs_3rdparty/qtbindings_gui/src/qtscript_QStyleOptionRubberBand.cpp

src/libs_3rdparty/qtbindings_gui/src/qtscript_QStyleOptionSizeGrip.cpp

src/libs_3rdparty/qtbindings_gui/src/qtscript_QStyleOptionSlider.cpp

src/libs_3rdparty/qtbindings_gui/src/qtscript_QStyleOptionSpinBox.cpp

src/libs_3rdparty/qtbindings_gui/src/qtscript_QStyleOptionTab.cpp

src/libs_3rdparty/qtbindings_gui/src/qtscript_QStyleOptionTabBarBase.cpp

src/libs_3rdparty/qtbindings_gui/src/qtscript_QStyleOptionTabV2.cpp

src/libs_3rdparty/qtbindings_gui/src/qtscript_QStyleOptionTabWidgetFrame.cpp

src/libs_3rdparty/qtbindings_gui/src/qtscript_QStyleOptionTitleBar.cpp

src/libs_3rdparty/qtbindings_gui/src/qtscript_QStyleOptionToolBar.cpp

src/libs_3rdparty/qtbindings_gui/src/qtscript_QStyleOptionToolBox.cpp

src/libs_3rdparty/qtbindings_gui/src/qtscript_QStyleOptionToolBoxV2.cpp

src/libs_3rdparty/qtbindings_gui/src/qtscript_QStyleOptionToolButton.cpp

src/libs_3rdparty/qtbindings_gui/src/qtscript_QStyleOptionViewItem.cpp

src/libs_3rdparty/qtbindings_gui/src/qtscript_QStyleOptionViewItemV2.cpp

src/libs_3rdparty/qtbindings_gui/src/qtscript_QStyleOptionViewItemV3.cpp

src/libs_3rdparty/qtbindings_gui/src/qtscript_QStyleOptionViewItemV4.cpp

src/libs_3rdparty/qtbindings_gui/src/qtscript_QStylePainter.cpp

src/libs_3rdparty/qtbindings_gui/src/qtscript_QStylePlugin.cpp

src/libs_3rdparty/qtbindings_gui/src/qtscript_QStyledItemDelegate.cpp

src/libs_3rdparty/qtbindings_gui/src/qtscript_QSyntaxHighlighter.cpp

src/libs_3rdparty/qtbindings_gui/src/qtscript_QSystemTrayIcon.cpp

src/libs_3rdparty/qtbindings_gui/src/qtscript_QTabBar.cpp

src/libs_3rdparty/qtbindings_gui/src/qtscript_QTabWidget.cpp

src/libs_3rdparty/qtbindings_gui/src/qtscript_QTableView.cpp

src/libs_3rdparty/qtbindings_gui/src/qtscript_QTableWidget.cpp

src/libs_3rdparty/qtbindings_gui/src/qtscript_QTableWidgetItem.cpp

src/libs_3rdparty/qtbindings_gui/src/qtscript_QTableWidgetSelectionRange.cpp

src/libs_3rdparty/qtbindings_gui/src/qtscript_QTabletEvent.cpp

src/libs_3rdparty/qtbindings_gui/src/qtscript_QTextBlock.cpp

src/libs_3rdparty/qtbindings_gui/src/qtscript_QTextBlockFormat.cpp

src/libs_3rdparty/qtbindings_gui/src/qtscript_QTextBlockGroup.cpp

src/libs_3rdparty/qtbindings_gui/src/qtscript_QTextBlockUserData.cpp

src/libs_3rdparty/qtbindings_gui/src/qtscript_QTextBrowser.cpp

src/libs_3rdparty/qtbindings_gui/src/qtscript_QTextCharFormat.cpp

src/libs_3rdparty/qtbindings_gui/src/qtscript_QTextCodecPlugin.cpp

src/libs_3rdparty/qtbindings_gui/src/qtscript_QTextCursor.cpp

src/libs_3rdparty/qtbindings_gui/src/qtscript_QTextDocument.cpp

src/libs_3rdparty/qtbindings_gui/src/qtscript_QTextDocumentFragment.cpp

src/libs_3rdparty/qtbindings_gui/src/qtscript_QTextEdit.cpp

src/libs_3rdparty/qtbindings_gui/src/qtscript_QTextFormat.cpp

src/libs_3rdparty/qtbindings_gui/src/qtscript_QTextFragment.cpp

src/libs_3rdparty/qtbindings_gui/src/qtscript_QTextFrame.cpp

src/libs_3rdparty/qtbindings_gui/src/qtscript_QTextFrameFormat.cpp

src/libs_3rdparty/qtbindings_gui/src/qtscript_QTextImageFormat.cpp

src/libs_3rdparty/qtbindings_gui/src/qtscript_QTextInlineObject.cpp

src/libs_3rdparty/qtbindings_gui/src/qtscript_QTextItem.cpp

src/libs_3rdparty/qtbindings_gui/src/qtscript_QTextLayout.cpp

src/libs_3rdparty/qtbindings_gui/src/qtscript_QTextLength.cpp

src/libs_3rdparty/qtbindings_gui/src/qtscript_QTextLine.cpp

src/libs_3rdparty/qtbindings_gui/src/qtscript_QTextList.cpp

src/libs_3rdparty/qtbindings_gui/src/qtscript_QTextListFormat.cpp

src/libs_3rdparty/qtbindings_gui/src/qtscript_QTextObject.cpp

src/libs_3rdparty/qtbindings_gui/src/qtscript_QTextObjectInterface.cpp

src/libs_3rdparty/qtbindings_gui/src/qtscript_QTextTable.cpp

src/libs_3rdparty/qtbindings_gui/src/qtscript_QTextTableCell.cpp

src/libs_3rdparty/qtbindings_gui/src/qtscript_QTextTableCellFormat.cpp

src/libs_3rdparty/qtbindings_gui/src/qtscript_QTextTableFormat.cpp

src/libs_3rdparty/qtbindings_gui/src/qtscript_QTimeEdit.cpp

src/libs_3rdparty/qtbindings_gui/src/qtscript_QToolBar.cpp

src/libs_3rdparty/qtbindings_gui/src/qtscript_QToolBarChangeEvent.cpp

src/libs_3rdparty/qtbindings_gui/src/qtscript_QToolBox.cpp

src/libs_3rdparty/qtbindings_gui/src/qtscript_QToolButton.cpp

src/libs_3rdparty/qtbindings_gui/src/qtscript_QToolTip.cpp

src/libs_3rdparty/qtbindings_gui/src/qtscript_QTransform.cpp

src/libs_3rdparty/qtbindings_gui/src/qtscript_QTreeView.cpp

src/libs_3rdparty/qtbindings_gui/src/qtscript_QTreeWidget.cpp

src/libs_3rdparty/qtbindings_gui/src/qtscript_QTreeWidgetItem.cpp

src/libs_3rdparty/qtbindings_gui/src/qtscript_QUndoCommand.cpp

src/libs_3rdparty/qtbindings_gui/src/qtscript_QUndoGroup.cpp

src/libs_3rdparty/qtbindings_gui/src/qtscript_QUndoStack.cpp

src/libs_3rdparty/qtbindings_gui/src/qtscript_QUndoView.cpp

src/libs_3rdparty/qtbindings_gui/src/qtscript_QVBoxLayout.cpp

src/libs_3rdparty/qtbindings_gui/src/qtscript_QValidator.cpp

src/libs_3rdparty/qtbindings_gui/src/qtscript_QWhatsThis.cpp

src/libs_3rdparty/qtbindings_gui/src/qtscript_QWhatsThisClickedEvent.cpp

src/libs_3rdparty/qtbindings_gui/src/qtscript_QWheelEvent.cpp

src/libs_3rdparty/qtbindings_gui/src/qtscript_QWidget.cpp

src/libs_3rdparty/qtbindings_gui/src/qtscript_QWidgetAction.cpp

src/libs_3rdparty/qtbindings_gui/src/qtscript_QWidgetItem.cpp

src/libs_3rdparty/qtbindings_gui/src/qtscript_QWindowStateChangeEvent.cpp

src/libs_3rdparty/qtbindings_gui/src/qtscript_QWindowsStyle.cpp

src/libs_3rdparty/qtbindings_gui/src/qtscript_QWizard.cpp

src/libs_3rdparty/qtbindings_gui/src/qtscript_QWizardPage.cpp

src/libs_3rdparty/qtbindings_gui/src/qtscript_QWorkspace.cpp

src/libs_3rdparty/qtbindings_gui/src/qtscriptshell_QAbstractButton.cpp

src/libs_3rdparty/qtbindings_gui/src/qtscriptshell_QAbstractButton.h

src/libs_3rdparty/qtbindings_gui/src/qtscriptshell_QAbstractGraphicsShapeItem.cpp

src/libs_3rdparty/qtbindings_gui/src/qtscriptshell_QAbstractGraphicsShapeItem.h

src/libs_3rdparty/qtbindings_gui/src/qtscriptshell_QAbstractItemDelegate.cpp

src/libs_3rdparty/qtbindings_gui/src/qtscriptshell_QAbstractItemDelegate.h

src/libs_3rdparty/qtbindings_gui/src/qtscriptshell_QAbstractItemView.cpp

src/libs_3rdparty/qtbindings_gui/src/qtscriptshell_QAbstractItemView.h

src/libs_3rdparty/qtbindings_gui/src/qtscriptshell_QAbstractPageSetupDialog.cpp

src/libs_3rdparty/qtbindings_gui/src/qtscriptshell_QAbstractPageSetupDialog.h

src/libs_3rdparty/qtbindings_gui/src/qtscriptshell_QAbstractPrintDialog.cpp

src/libs_3rdparty/qtbindings_gui/src/qtscriptshell_QAbstractPrintDialog.h

src/libs_3rdparty/qtbindings_gui/src/qtscriptshell_QAbstractScrollArea.cpp

src/libs_3rdparty/qtbindings_gui/src/qtscriptshell_QAbstractScrollArea.h

src/libs_3rdparty/qtbindings_gui/src/qtscriptshell_QAbstractSlider.cpp

src/libs_3rdparty/qtbindings_gui/src/qtscriptshell_QAbstractSlider.h

src/libs_3rdparty/qtbindings_gui/src/qtscriptshell_QAbstractSpinBox.cpp

src/libs_3rdparty/qtbindings_gui/src/qtscriptshell_QAbstractSpinBox.h

src/libs_3rdparty/qtbindings_gui/src/qtscriptshell_QAccessible.cpp

src/libs_3rdparty/qtbindings_gui/src/qtscriptshell_QAccessible.h

src/libs_3rdparty/qtbindings_gui/src/qtscriptshell_QAccessible2Interface.cpp

src/libs_3rdparty/qtbindings_gui/src/qtscriptshell_QAccessible2Interface.h

src/libs_3rdparty/qtbindings_gui/src/qtscriptshell_QAccessibleBridge.cpp

src/libs_3rdparty/qtbindings_gui/src/qtscriptshell_QAccessibleBridge.h

src/libs_3rdparty/qtbindings_gui/src/qtscriptshell_QAccessibleInterface.cpp

src/libs_3rdparty/qtbindings_gui/src/qtscriptshell_QAccessibleInterface.h

src/libs_3rdparty/qtbindings_gui/src/qtscriptshell_QAccessibleInterfaceEx.cpp

src/libs_3rdparty/qtbindings_gui/src/qtscriptshell_QAccessibleInterfaceEx.h

src/libs_3rdparty/qtbindings_gui/src/qtscriptshell_QAccessibleObject.cpp

src/libs_3rdparty/qtbindings_gui/src/qtscriptshell_QAccessibleObject.h

src/libs_3rdparty/qtbindings_gui/src/qtscriptshell_QAccessibleObjectEx.cpp

src/libs_3rdparty/qtbindings_gui/src/qtscriptshell_QAccessibleObjectEx.h

src/libs_3rdparty/qtbindings_gui/src/qtscriptshell_QAccessiblePlugin.cpp

src/libs_3rdparty/qtbindings_gui/src/qtscriptshell_QAccessiblePlugin.h

src/libs_3rdparty/qtbindings_gui/src/qtscriptshell_QAccessibleTableInterface.cpp

src/libs_3rdparty/qtbindings_gui/src/qtscriptshell_QAccessibleTableInterface.h

src/libs_3rdparty/qtbindings_gui/src/qtscriptshell_QAccessibleWidget.cpp

src/libs_3rdparty/qtbindings_gui/src/qtscriptshell_QAccessibleWidget.h

src/libs_3rdparty/qtbindings_gui/src/qtscriptshell_QAccessibleWidgetEx.cpp

src/libs_3rdparty/qtbindings_gui/src/qtscriptshell_QAccessibleWidgetEx.h

src/libs_3rdparty/qtbindings_gui/src/qtscriptshell_QAction.cpp

src/libs_3rdparty/qtbindings_gui/src/qtscriptshell_QAction.h

src/libs_3rdparty/qtbindings_gui/src/qtscriptshell_QActionGroup.cpp

src/libs_3rdparty/qtbindings_gui/src/qtscriptshell_QActionGroup.h

src/libs_3rdparty/qtbindings_gui/src/qtscriptshell_QApplication.cpp

src/libs_3rdparty/qtbindings_gui/src/qtscriptshell_QApplication.h

src/libs_3rdparty/qtbindings_gui/src/qtscriptshell_QBitmap.cpp

src/libs_3rdparty/qtbindings_gui/src/qtscriptshell_QBitmap.h

src/libs_3rdparty/qtbindings_gui/src/qtscriptshell_QBoxLayout.cpp

src/libs_3rdparty/qtbindings_gui/src/qtscriptshell_QBoxLayout.h

src/libs_3rdparty/qtbindings_gui/src/qtscriptshell_QButtonGroup.cpp

src/libs_3rdparty/qtbindings_gui/src/qtscriptshell_QButtonGroup.h

src/libs_3rdparty/qtbindings_gui/src/qtscriptshell_QCDEStyle.cpp

src/libs_3rdparty/qtbindings_gui/src/qtscriptshell_QCDEStyle.h

src/libs_3rdparty/qtbindings_gui/src/qtscriptshell_QCalendarWidget.cpp

src/libs_3rdparty/qtbindings_gui/src/qtscriptshell_QCalendarWidget.h

src/libs_3rdparty/qtbindings_gui/src/qtscriptshell_QCheckBox.cpp

src/libs_3rdparty/qtbindings_gui/src/qtscriptshell_QCheckBox.h

src/libs_3rdparty/qtbindings_gui/src/qtscriptshell_QCleanlooksStyle.cpp

src/libs_3rdparty/qtbindings_gui/src/qtscriptshell_QCleanlooksStyle.h

src/libs_3rdparty/qtbindings_gui/src/qtscriptshell_QColumnView.cpp

src/libs_3rdparty/qtbindings_gui/src/qtscriptshell_QColumnView.h

src/libs_3rdparty/qtbindings_gui/src/qtscriptshell_QComboBox.cpp

src/libs_3rdparty/qtbindings_gui/src/qtscriptshell_QComboBox.h

src/libs_3rdparty/qtbindings_gui/src/qtscriptshell_QCommandLinkButton.cpp

src/libs_3rdparty/qtbindings_gui/src/qtscriptshell_QCommandLinkButton.h

src/libs_3rdparty/qtbindings_gui/src/qtscriptshell_QCommonStyle.cpp

src/libs_3rdparty/qtbindings_gui/src/qtscriptshell_QCommonStyle.h

src/libs_3rdparty/qtbindings_gui/src/qtscriptshell_QCompleter.cpp

src/libs_3rdparty/qtbindings_gui/src/qtscriptshell_QCompleter.h

src/libs_3rdparty/qtbindings_gui/src/qtscriptshell_QContextMenuEvent.cpp

src/libs_3rdparty/qtbindings_gui/src/qtscriptshell_QContextMenuEvent.h

src/libs_3rdparty/qtbindings_gui/src/qtscriptshell_QDataWidgetMapper.cpp

src/libs_3rdparty/qtbindings_gui/src/qtscriptshell_QDataWidgetMapper.h

src/libs_3rdparty/qtbindings_gui/src/qtscriptshell_QDateEdit.cpp

src/libs_3rdparty/qtbindings_gui/src/qtscriptshell_QDateEdit.h

src/libs_3rdparty/qtbindings_gui/src/qtscriptshell_QDateTimeEdit.cpp

src/libs_3rdparty/qtbindings_gui/src/qtscriptshell_QDateTimeEdit.h

src/libs_3rdparty/qtbindings_gui/src/qtscriptshell_QDesktopServices.cpp

src/libs_3rdparty/qtbindings_gui/src/qtscriptshell_QDesktopServices.h

src/libs_3rdparty/qtbindings_gui/src/qtscriptshell_QDesktopWidget.cpp

src/libs_3rdparty/qtbindings_gui/src/qtscriptshell_QDesktopWidget.h

src/libs_3rdparty/qtbindings_gui/src/qtscriptshell_QDial.cpp

src/libs_3rdparty/qtbindings_gui/src/qtscriptshell_QDial.h

src/libs_3rdparty/qtbindings_gui/src/qtscriptshell_QDialog.cpp

src/libs_3rdparty/qtbindings_gui/src/qtscriptshell_QDialog.h

src/libs_3rdparty/qtbindings_gui/src/qtscriptshell_QDialogButtonBox.cpp

src/libs_3rdparty/qtbindings_gui/src/qtscriptshell_QDialogButtonBox.h

src/libs_3rdparty/qtbindings_gui/src/qtscriptshell_QDockWidget.cpp

src/libs_3rdparty/qtbindings_gui/src/qtscriptshell_QDockWidget.h

src/libs_3rdparty/qtbindings_gui/src/qtscriptshell_QDoubleSpinBox.cpp

src/libs_3rdparty/qtbindings_gui/src/qtscriptshell_QDoubleSpinBox.h

src/libs_3rdparty/qtbindings_gui/src/qtscriptshell_QDoubleValidator.cpp

src/libs_3rdparty/qtbindings_gui/src/qtscriptshell_QDoubleValidator.h

src/libs_3rdparty/qtbindings_gui/src/qtscriptshell_QDragMoveEvent.cpp

src/libs_3rdparty/qtbindings_gui/src/qtscriptshell_QDragMoveEvent.h

src/libs_3rdparty/qtbindings_gui/src/qtscriptshell_QDragResponseEvent.cpp

src/libs_3rdparty/qtbindings_gui/src/qtscriptshell_QDragResponseEvent.h

src/libs_3rdparty/qtbindings_gui/src/qtscriptshell_QErrorMessage.cpp

src/libs_3rdparty/qtbindings_gui/src/qtscriptshell_QErrorMessage.h

src/libs_3rdparty/qtbindings_gui/src/qtscriptshell_QFileDialog.cpp

src/libs_3rdparty/qtbindings_gui/src/qtscriptshell_QFileDialog.h

src/libs_3rdparty/qtbindings_gui/src/qtscriptshell_QFileIconProvider.cpp

src/libs_3rdparty/qtbindings_gui/src/qtscriptshell_QFileIconProvider.h

src/libs_3rdparty/qtbindings_gui/src/qtscriptshell_QFocusFrame.cpp

src/libs_3rdparty/qtbindings_gui/src/qtscriptshell_QFocusFrame.h

src/libs_3rdparty/qtbindings_gui/src/qtscriptshell_QFontComboBox.cpp

src/libs_3rdparty/qtbindings_gui/src/qtscriptshell_QFontComboBox.h

src/libs_3rdparty/qtbindings_gui/src/qtscriptshell_QFormLayout.cpp

src/libs_3rdparty/qtbindings_gui/src/qtscriptshell_QFormLayout.h

src/libs_3rdparty/qtbindings_gui/src/qtscriptshell_QFrame.cpp

src/libs_3rdparty/qtbindings_gui/src/qtscriptshell_QFrame.h

src/libs_3rdparty/qtbindings_gui/src/qtscriptshell_QGraphicsEllipseItem.cpp

src/libs_3rdparty/qtbindings_gui/src/qtscriptshell_QGraphicsEllipseItem.h

src/libs_3rdparty/qtbindings_gui/src/qtscriptshell_QGraphicsGridLayout.cpp

src/libs_3rdparty/qtbindings_gui/src/qtscriptshell_QGraphicsGridLayout.h

src/libs_3rdparty/qtbindings_gui/src/qtscriptshell_QGraphicsItem.cpp

src/libs_3rdparty/qtbindings_gui/src/qtscriptshell_QGraphicsItem.h

src/libs_3rdparty/qtbindings_gui/src/qtscriptshell_QGraphicsItemAnimation.cpp

src/libs_3rdparty/qtbindings_gui/src/qtscriptshell_QGraphicsItemAnimation.h

src/libs_3rdparty/qtbindings_gui/src/qtscriptshell_QGraphicsItemGroup.cpp

src/libs_3rdparty/qtbindings_gui/src/qtscriptshell_QGraphicsItemGroup.h

src/libs_3rdparty/qtbindings_gui/src/qtscriptshell_QGraphicsLayout.cpp

src/libs_3rdparty/qtbindings_gui/src/qtscriptshell_QGraphicsLayout.h

src/libs_3rdparty/qtbindings_gui/src/qtscriptshell_QGraphicsLayoutItem.cpp

src/libs_3rdparty/qtbindings_gui/src/qtscriptshell_QGraphicsLayoutItem.h

src/libs_3rdparty/qtbindings_gui/src/qtscriptshell_QGraphicsLineItem.cpp

src/libs_3rdparty/qtbindings_gui/src/qtscriptshell_QGraphicsLineItem.h

src/libs_3rdparty/qtbindings_gui/src/qtscriptshell_QGraphicsLinearLayout.cpp

src/libs_3rdparty/qtbindings_gui/src/qtscriptshell_QGraphicsLinearLayout.h

src/libs_3rdparty/qtbindings_gui/src/qtscriptshell_QGraphicsPathItem.cpp

src/libs_3rdparty/qtbindings_gui/src/qtscriptshell_QGraphicsPathItem.h

src/libs_3rdparty/qtbindings_gui/src/qtscriptshell_QGraphicsPixmapItem.cpp

src/libs_3rdparty/qtbindings_gui/src/qtscriptshell_QGraphicsPixmapItem.h

src/libs_3rdparty/qtbindings_gui/src/qtscriptshell_QGraphicsPolygonItem.cpp

src/libs_3rdparty/qtbindings_gui/src/qtscriptshell_QGraphicsPolygonItem.h

src/libs_3rdparty/qtbindings_gui/src/qtscriptshell_QGraphicsProxyWidget.cpp

src/libs_3rdparty/qtbindings_gui/src/qtscriptshell_QGraphicsProxyWidget.h

src/libs_3rdparty/qtbindings_gui/src/qtscriptshell_QGraphicsRectItem.cpp

src/libs_3rdparty/qtbindings_gui/src/qtscriptshell_QGraphicsRectItem.h

src/libs_3rdparty/qtbindings_gui/src/qtscriptshell_QGraphicsScene.cpp

src/libs_3rdparty/qtbindings_gui/src/qtscriptshell_QGraphicsScene.h

src/libs_3rdparty/qtbindings_gui/src/qtscriptshell_QGraphicsSimpleTextItem.cpp

src/libs_3rdparty/qtbindings_gui/src/qtscriptshell_QGraphicsSimpleTextItem.h

src/libs_3rdparty/qtbindings_gui/src/qtscriptshell_QGraphicsTextItem.cpp

src/libs_3rdparty/qtbindings_gui/src/qtscriptshell_QGraphicsTextItem.h

src/libs_3rdparty/qtbindings_gui/src/qtscriptshell_QGraphicsView.cpp

src/libs_3rdparty/qtbindings_gui/src/qtscriptshell_QGraphicsView.h

src/libs_3rdparty/qtbindings_gui/src/qtscriptshell_QGraphicsWidget.cpp

src/libs_3rdparty/qtbindings_gui/src/qtscriptshell_QGraphicsWidget.h

src/libs_3rdparty/qtbindings_gui/src/qtscriptshell_QGridLayout.cpp

src/libs_3rdparty/qtbindings_gui/src/qtscriptshell_QGridLayout.h

src/libs_3rdparty/qtbindings_gui/src/qtscriptshell_QGroupBox.cpp

src/libs_3rdparty/qtbindings_gui/src/qtscriptshell_QGroupBox.h

src/libs_3rdparty/qtbindings_gui/src/qtscriptshell_QHBoxLayout.cpp

src/libs_3rdparty/qtbindings_gui/src/qtscriptshell_QHBoxLayout.h

src/libs_3rdparty/qtbindings_gui/src/qtscriptshell_QHeaderView.cpp

src/libs_3rdparty/qtbindings_gui/src/qtscriptshell_QHeaderView.h

src/libs_3rdparty/qtbindings_gui/src/qtscriptshell_QHoverEvent.cpp

src/libs_3rdparty/qtbindings_gui/src/qtscriptshell_QHoverEvent.h

src/libs_3rdparty/qtbindings_gui/src/qtscriptshell_QIconEngine.cpp

src/libs_3rdparty/qtbindings_gui/src/qtscriptshell_QIconEngine.h

src/libs_3rdparty/qtbindings_gui/src/qtscriptshell_QIconEnginePluginV2.cpp

src/libs_3rdparty/qtbindings_gui/src/qtscriptshell_QIconEnginePluginV2.h

src/libs_3rdparty/qtbindings_gui/src/qtscriptshell_QImage.cpp

src/libs_3rdparty/qtbindings_gui/src/qtscriptshell_QImage.h

src/libs_3rdparty/qtbindings_gui/src/qtscriptshell_QImageIOHandler.cpp

src/libs_3rdparty/qtbindings_gui/src/qtscriptshell_QImageIOHandler.h

src/libs_3rdparty/qtbindings_gui/src/qtscriptshell_QImageIOPlugin.cpp

src/libs_3rdparty/qtbindings_gui/src/qtscriptshell_QImageIOPlugin.h

src/libs_3rdparty/qtbindings_gui/src/qtscriptshell_QInputContext.cpp

src/libs_3rdparty/qtbindings_gui/src/qtscriptshell_QInputContext.h

src/libs_3rdparty/qtbindings_gui/src/qtscriptshell_QInputContextFactory.cpp

src/libs_3rdparty/qtbindings_gui/src/qtscriptshell_QInputContextFactory.h

src/libs_3rdparty/qtbindings_gui/src/qtscriptshell_QInputContextPlugin.cpp

src/libs_3rdparty/qtbindings_gui/src/qtscriptshell_QInputContextPlugin.h

src/libs_3rdparty/qtbindings_gui/src/qtscriptshell_QInputEvent.cpp

src/libs_3rdparty/qtbindings_gui/src/qtscriptshell_QInputEvent.h

src/libs_3rdparty/qtbindings_gui/src/qtscriptshell_QIntValidator.cpp

src/libs_3rdparty/qtbindings_gui/src/qtscriptshell_QIntValidator.h

src/libs_3rdparty/qtbindings_gui/src/qtscriptshell_QItemDelegate.cpp

src/libs_3rdparty/qtbindings_gui/src/qtscriptshell_QItemDelegate.h

src/libs_3rdparty/qtbindings_gui/src/qtscriptshell_QItemEditorCreatorBase.cpp

src/libs_3rdparty/qtbindings_gui/src/qtscriptshell_QItemEditorCreatorBase.h

src/libs_3rdparty/qtbindings_gui/src/qtscriptshell_QItemEditorFactory.cpp

src/libs_3rdparty/qtbindings_gui/src/qtscriptshell_QItemEditorFactory.h

src/libs_3rdparty/qtbindings_gui/src/qtscriptshell_QKeyEvent.cpp

src/libs_3rdparty/qtbindings_gui/src/qtscriptshell_QKeyEvent.h

src/libs_3rdparty/qtbindings_gui/src/qtscriptshell_QLCDNumber.cpp

src/libs_3rdparty/qtbindings_gui/src/qtscriptshell_QLCDNumber.h

src/libs_3rdparty/qtbindings_gui/src/qtscriptshell_QLabel.cpp

src/libs_3rdparty/qtbindings_gui/src/qtscriptshell_QLabel.h

src/libs_3rdparty/qtbindings_gui/src/qtscriptshell_QLayout.cpp

src/libs_3rdparty/qtbindings_gui/src/qtscriptshell_QLayout.h

src/libs_3rdparty/qtbindings_gui/src/qtscriptshell_QLayoutItem.cpp

src/libs_3rdparty/qtbindings_gui/src/qtscriptshell_QLayoutItem.h

src/libs_3rdparty/qtbindings_gui/src/qtscriptshell_QLineEdit.cpp

src/libs_3rdparty/qtbindings_gui/src/qtscriptshell_QLineEdit.h

src/libs_3rdparty/qtbindings_gui/src/qtscriptshell_QListView.cpp

src/libs_3rdparty/qtbindings_gui/src/qtscriptshell_QListView.h

src/libs_3rdparty/qtbindings_gui/src/qtscriptshell_QListWidget.cpp

src/libs_3rdparty/qtbindings_gui/src/qtscriptshell_QListWidget.h

src/libs_3rdparty/qtbindings_gui/src/qtscriptshell_QListWidgetItem.cpp

src/libs_3rdparty/qtbindings_gui/src/qtscriptshell_QListWidgetItem.h

src/libs_3rdparty/qtbindings_gui/src/qtscriptshell_QMainWindow.cpp

src/libs_3rdparty/qtbindings_gui/src/qtscriptshell_QMainWindow.h

src/libs_3rdparty/qtbindings_gui/src/qtscriptshell_QMdiArea.cpp

src/libs_3rdparty/qtbindings_gui/src/qtscriptshell_QMdiArea.h

src/libs_3rdparty/qtbindings_gui/src/qtscriptshell_QMdiSubWindow.cpp

src/libs_3rdparty/qtbindings_gui/src/qtscriptshell_QMdiSubWindow.h

src/libs_3rdparty/qtbindings_gui/src/qtscriptshell_QMenu.cpp

src/libs_3rdparty/qtbindings_gui/src/qtscriptshell_QMenu.h

src/libs_3rdparty/qtbindings_gui/src/qtscriptshell_QMenuBar.cpp

src/libs_3rdparty/qtbindings_gui/src/qtscriptshell_QMenuBar.h

src/libs_3rdparty/qtbindings_gui/src/qtscriptshell_QMessageBox.cpp

src/libs_3rdparty/qtbindings_gui/src/qtscriptshell_QMessageBox.h

src/libs_3rdparty/qtbindings_gui/src/qtscriptshell_QMotifStyle.cpp

src/libs_3rdparty/qtbindings_gui/src/qtscriptshell_QMotifStyle.h

src/libs_3rdparty/qtbindings_gui/src/qtscriptshell_QMouseEvent.cpp

src/libs_3rdparty/qtbindings_gui/src/qtscriptshell_QMouseEvent.h

src/libs_3rdparty/qtbindings_gui/src/qtscriptshell_QMoveEvent.cpp

src/libs_3rdparty/qtbindings_gui/src/qtscriptshell_QMoveEvent.h

src/libs_3rdparty/qtbindings_gui/src/qtscriptshell_QMovie.cpp

src/libs_3rdparty/qtbindings_gui/src/qtscriptshell_QMovie.h

src/libs_3rdparty/qtbindings_gui/src/qtscriptshell_QPageSetupDialog.cpp

src/libs_3rdparty/qtbindings_gui/src/qtscriptshell_QPageSetupDialog.h

src/libs_3rdparty/qtbindings_gui/src/qtscriptshell_QPaintDevice.cpp

src/libs_3rdparty/qtbindings_gui/src/qtscriptshell_QPaintDevice.h

src/libs_3rdparty/qtbindings_gui/src/qtscriptshell_QPaintEngine.cpp

src/libs_3rdparty/qtbindings_gui/src/qtscriptshell_QPaintEngine.h

src/libs_3rdparty/qtbindings_gui/src/qtscriptshell_QPaintEngineState.cpp

src/libs_3rdparty/qtbindings_gui/src/qtscriptshell_QPaintEngineState.h

src/libs_3rdparty/qtbindings_gui/src/qtscriptshell_QPaintEvent.cpp

src/libs_3rdparty/qtbindings_gui/src/qtscriptshell_QPaintEvent.h

src/libs_3rdparty/qtbindings_gui/src/qtscriptshell_QPicture.cpp

src/libs_3rdparty/qtbindings_gui/src/qtscriptshell_QPicture.h

src/libs_3rdparty/qtbindings_gui/src/qtscriptshell_QPictureFormatPlugin.cpp

src/libs_3rdparty/qtbindings_gui/src/qtscriptshell_QPictureFormatPlugin.h

src/libs_3rdparty/qtbindings_gui/src/qtscriptshell_QPixmap.cpp

src/libs_3rdparty/qtbindings_gui/src/qtscriptshell_QPixmap.h

src/libs_3rdparty/qtbindings_gui/src/qtscriptshell_QPixmapCache.cpp

src/libs_3rdparty/qtbindings_gui/src/qtscriptshell_QPixmapCache.h

src/libs_3rdparty/qtbindings_gui/src/qtscriptshell_QPlainTextDocumentLayout.cpp

src/libs_3rdparty/qtbindings_gui/src/qtscriptshell_QPlainTextDocumentLayout.h

src/libs_3rdparty/qtbindings_gui/src/qtscriptshell_QPlainTextEdit.cpp

src/libs_3rdparty/qtbindings_gui/src/qtscriptshell_QPlainTextEdit.h

src/libs_3rdparty/qtbindings_gui/src/qtscriptshell_QPlastiqueStyle.cpp

src/libs_3rdparty/qtbindings_gui/src/qtscriptshell_QPlastiqueStyle.h

src/libs_3rdparty/qtbindings_gui/src/qtscriptshell_QPrintDialog.cpp

src/libs_3rdparty/qtbindings_gui/src/qtscriptshell_QPrintDialog.h

src/libs_3rdparty/qtbindings_gui/src/qtscriptshell_QPrintEngine.cpp

src/libs_3rdparty/qtbindings_gui/src/qtscriptshell_QPrintEngine.h

src/libs_3rdparty/qtbindings_gui/src/qtscriptshell_QPrintPreviewDialog.cpp

src/libs_3rdparty/qtbindings_gui/src/qtscriptshell_QPrintPreviewDialog.h

src/libs_3rdparty/qtbindings_gui/src/qtscriptshell_QPrintPreviewWidget.cpp

src/libs_3rdparty/qtbindings_gui/src/qtscriptshell_QPrintPreviewWidget.h

src/libs_3rdparty/qtbindings_gui/src/qtscriptshell_QPrinter.cpp

src/libs_3rdparty/qtbindings_gui/src/qtscriptshell_QPrinter.h

src/libs_3rdparty/qtbindings_gui/src/qtscriptshell_QProgressBar.cpp

src/libs_3rdparty/qtbindings_gui/src/qtscriptshell_QProgressBar.h

src/libs_3rdparty/qtbindings_gui/src/qtscriptshell_QProgressDialog.cpp

src/libs_3rdparty/qtbindings_gui/src/qtscriptshell_QProgressDialog.h

src/libs_3rdparty/qtbindings_gui/src/qtscriptshell_QPushButton.cpp

src/libs_3rdparty/qtbindings_gui/src/qtscriptshell_QPushButton.h

src/libs_3rdparty/qtbindings_gui/src/qtscriptshell_QRadioButton.cpp

src/libs_3rdparty/qtbindings_gui/src/qtscriptshell_QRadioButton.h

src/libs_3rdparty/qtbindings_gui/src/qtscriptshell_QRegExpValidator.cpp

src/libs_3rdparty/qtbindings_gui/src/qtscriptshell_QRegExpValidator.h

src/libs_3rdparty/qtbindings_gui/src/qtscriptshell_QResizeEvent.cpp

src/libs_3rdparty/qtbindings_gui/src/qtscriptshell_QResizeEvent.h

src/libs_3rdparty/qtbindings_gui/src/qtscriptshell_QRubberBand.cpp

src/libs_3rdparty/qtbindings_gui/src/qtscriptshell_QRubberBand.h

src/libs_3rdparty/qtbindings_gui/src/qtscriptshell_QScrollArea.cpp

src/libs_3rdparty/qtbindings_gui/src/qtscriptshell_QScrollArea.h

src/libs_3rdparty/qtbindings_gui/src/qtscriptshell_QScrollBar.cpp

src/libs_3rdparty/qtbindings_gui/src/qtscriptshell_QScrollBar.h

src/libs_3rdparty/qtbindings_gui/src/qtscriptshell_QShortcut.cpp

src/libs_3rdparty/qtbindings_gui/src/qtscriptshell_QShortcut.h

src/libs_3rdparty/qtbindings_gui/src/qtscriptshell_QShortcutEvent.cpp

src/libs_3rdparty/qtbindings_gui/src/qtscriptshell_QShortcutEvent.h

src/libs_3rdparty/qtbindings_gui/src/qtscriptshell_QSizeGrip.cpp

src/libs_3rdparty/qtbindings_gui/src/qtscriptshell_QSizeGrip.h

src/libs_3rdparty/qtbindings_gui/src/qtscriptshell_QSlider.cpp

src/libs_3rdparty/qtbindings_gui/src/qtscriptshell_QSlider.h

src/libs_3rdparty/qtbindings_gui/src/qtscriptshell_QSound.cpp

src/libs_3rdparty/qtbindings_gui/src/qtscriptshell_QSound.h

src/libs_3rdparty/qtbindings_gui/src/qtscriptshell_QSpacerItem.cpp

src/libs_3rdparty/qtbindings_gui/src/qtscriptshell_QSpacerItem.h

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src/libs_3rdparty/qtbindings_gui/src/qtscriptshell_QSpinBox.h

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src/libs_3rdparty/qtbindings_gui/src/qtscriptshell_QSplitter.h

src/libs_3rdparty/qtbindings_gui/src/qtscriptshell_QSplitterHandle.cpp

src/libs_3rdparty/qtbindings_gui/src/qtscriptshell_QSplitterHandle.h

src/libs_3rdparty/qtbindings_gui/src/qtscriptshell_QStackedLayout.cpp

src/libs_3rdparty/qtbindings_gui/src/qtscriptshell_QStackedLayout.h

src/libs_3rdparty/qtbindings_gui/src/qtscriptshell_QStackedWidget.cpp

src/libs_3rdparty/qtbindings_gui/src/qtscriptshell_QStackedWidget.h

src/libs_3rdparty/qtbindings_gui/src/qtscriptshell_QStandardItem.cpp

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src/libs_3rdparty/qtbindings_gui/src/qtscriptshell_QStyle.cpp

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src/libs_3rdparty/qtbindings_gui/src/qtscriptshell_QStyleFactory.cpp

src/libs_3rdparty/qtbindings_gui/src/qtscriptshell_QStyleFactory.h

src/libs_3rdparty/qtbindings_gui/src/qtscriptshell_QStyleHintReturn.cpp

src/libs_3rdparty/qtbindings_gui/src/qtscriptshell_QStyleHintReturn.h

src/libs_3rdparty/qtbindings_gui/src/qtscriptshell_QStyleHintReturnMask.cpp

src/libs_3rdparty/qtbindings_gui/src/qtscriptshell_QStyleHintReturnMask.h

src/libs_3rdparty/qtbindings_gui/src/qtscriptshell_QStyleHintReturnVariant.cpp

src/libs_3rdparty/qtbindings_gui/src/qtscriptshell_QStyleHintReturnVariant.h

src/libs_3rdparty/qtbindings_gui/src/qtscriptshell_QStyleOption.cpp

src/libs_3rdparty/qtbindings_gui/src/qtscriptshell_QStyleOption.h

src/libs_3rdparty/qtbindings_gui/src/qtscriptshell_QStyleOptionButton.cpp

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src/libs_3rdparty/qtbindings_gui/src/qtscriptshell_QStyleOptionComboBox.h

src/libs_3rdparty/qtbindings_gui/src/qtscriptshell_QStyleOptionComplex.cpp

src/libs_3rdparty/qtbindings_gui/src/qtscriptshell_QStyleOptionComplex.h

src/libs_3rdparty/qtbindings_gui/src/qtscriptshell_QStyleOptionDockWidget.cpp

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src/libs_3rdparty/qtbindings_gui/src/qtscriptshell_QStyleOptionDockWidgetV2.cpp

src/libs_3rdparty/qtbindings_gui/src/qtscriptshell_QStyleOptionDockWidgetV2.h

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src/libs_3rdparty/qtbindings_gui/src/qtscriptshell_QStyleOptionFocusRect.h

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src/libs_3rdparty/qtbindings_gui/src/qtscriptshell_QStyleOptionFrameV2.cpp

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src/libs_3rdparty/qtbindings_gui/src/qtscriptshell_QStyleOptionGraphicsItem.h

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src/libs_3rdparty/qtbindings_gui/src/qtscriptshell_QStyleOptionGroupBox.h

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src/libs_3rdparty/qtbindings_gui/src/qtscriptshell_QStyleOptionMenuItem.h

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src/libs_3rdparty/qtbindings_gui/src/qtscriptshell_QStyleOptionProgressBar.h

src/libs_3rdparty/qtbindings_gui/src/qtscriptshell_QStyleOptionProgressBarV2.cpp

src/libs_3rdparty/qtbindings_gui/src/qtscriptshell_QStyleOptionProgressBarV2.h

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src/libs_3rdparty/qtbindings_gui/src/qtscriptshell_QStyleOptionRubberBand.h

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src/libs_3rdparty/qtbindings_gui/src/qtscriptshell_QStyleOptionSlider.h

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src/libs_3rdparty/qtbindings_gui/src/qtscriptshell_QStyleOptionTabBarBase.h

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src/libs_3rdparty/qtbindings_gui/src/qtscriptshell_QStyleOptionTabWidgetFrame.h

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src/libs_3rdparty/qtbindings_gui/src/qtscriptshell_QStyleOptionTitleBar.h

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src/libs_3rdparty/qtbindings_gui/src/qtscriptshell_QStyleOptionViewItemV2.cpp

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src/libs_3rdparty/qtbindings_gui/src/qtscriptshell_QStyleOptionViewItemV3.cpp

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src/libs_3rdparty/qtbindings_gui/src/qtscriptshell_QStyleOptionViewItemV4.cpp

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src/libs_3rdparty/qtbindings_gui/src/qtscriptshell_QStylePlugin.h

src/libs_3rdparty/qtbindings_gui/src/qtscriptshell_QStyledItemDelegate.cpp

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src/libs_3rdparty/qtbindings_gui/src/qtscriptshell_QTabBar.cpp

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src/libs_3rdparty/qtbindings_gui/src/qtscriptshell_QTabWidget.cpp

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src/libs_3rdparty/qtbindings_gui/src/qtscriptshell_QTextBlockFormat.h

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src/libs_3rdparty/qtbindings_gui/src/qtscriptshell_QTextBlockGroup.h

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src/libs_3rdparty/qtbindings_gui/src/qtscriptshell_QTextBrowser.cpp

src/libs_3rdparty/qtbindings_gui/src/qtscriptshell_QTextBrowser.h

src/libs_3rdparty/qtbindings_gui/src/qtscriptshell_QTextCharFormat.cpp

src/libs_3rdparty/qtbindings_gui/src/qtscriptshell_QTextCharFormat.h

src/libs_3rdparty/qtbindings_gui/src/qtscriptshell_QTextCodecPlugin.cpp

src/libs_3rdparty/qtbindings_gui/src/qtscriptshell_QTextCodecPlugin.h

src/libs_3rdparty/qtbindings_gui/src/qtscriptshell_QTextDocument.cpp

src/libs_3rdparty/qtbindings_gui/src/qtscriptshell_QTextDocument.h

src/libs_3rdparty/qtbindings_gui/src/qtscriptshell_QTextEdit.cpp

src/libs_3rdparty/qtbindings_gui/src/qtscriptshell_QTextEdit.h

src/libs_3rdparty/qtbindings_gui/src/qtscriptshell_QTextFrame.cpp

src/libs_3rdparty/qtbindings_gui/src/qtscriptshell_QTextFrame.h

src/libs_3rdparty/qtbindings_gui/src/qtscriptshell_QTextFrameFormat.cpp

src/libs_3rdparty/qtbindings_gui/src/qtscriptshell_QTextFrameFormat.h

src/libs_3rdparty/qtbindings_gui/src/qtscriptshell_QTextImageFormat.cpp

src/libs_3rdparty/qtbindings_gui/src/qtscriptshell_QTextImageFormat.h

src/libs_3rdparty/qtbindings_gui/src/qtscriptshell_QTextItem.cpp

src/libs_3rdparty/qtbindings_gui/src/qtscriptshell_QTextItem.h

src/libs_3rdparty/qtbindings_gui/src/qtscriptshell_QTextList.cpp

src/libs_3rdparty/qtbindings_gui/src/qtscriptshell_QTextList.h

src/libs_3rdparty/qtbindings_gui/src/qtscriptshell_QTextListFormat.cpp

src/libs_3rdparty/qtbindings_gui/src/qtscriptshell_QTextListFormat.h

src/libs_3rdparty/qtbindings_gui/src/qtscriptshell_QTextObject.cpp

src/libs_3rdparty/qtbindings_gui/src/qtscriptshell_QTextObject.h

src/libs_3rdparty/qtbindings_gui/src/qtscriptshell_QTextObjectInterface.cpp

src/libs_3rdparty/qtbindings_gui/src/qtscriptshell_QTextObjectInterface.h

src/libs_3rdparty/qtbindings_gui/src/qtscriptshell_QTextTable.cpp

src/libs_3rdparty/qtbindings_gui/src/qtscriptshell_QTextTable.h

src/libs_3rdparty/qtbindings_gui/src/qtscriptshell_QTextTableCellFormat.cpp

src/libs_3rdparty/qtbindings_gui/src/qtscriptshell_QTextTableCellFormat.h

src/libs_3rdparty/qtbindings_gui/src/qtscriptshell_QTextTableFormat.cpp

src/libs_3rdparty/qtbindings_gui/src/qtscriptshell_QTextTableFormat.h

src/libs_3rdparty/qtbindings_gui/src/qtscriptshell_QTimeEdit.cpp

src/libs_3rdparty/qtbindings_gui/src/qtscriptshell_QTimeEdit.h

src/libs_3rdparty/qtbindings_gui/src/qtscriptshell_QToolBar.cpp

src/libs_3rdparty/qtbindings_gui/src/qtscriptshell_QToolBar.h

src/libs_3rdparty/qtbindings_gui/src/qtscriptshell_QToolBox.cpp

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src/libs_3rdparty/qtbindings_gui/src/qtscriptshell_QToolButton.cpp

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src/libs_3rdparty/qtbindings_gui/src/qtscriptshell_QTreeView.cpp

src/libs_3rdparty/qtbindings_gui/src/qtscriptshell_QTreeView.h

src/libs_3rdparty/qtbindings_gui/src/qtscriptshell_QTreeWidget.cpp

src/libs_3rdparty/qtbindings_gui/src/qtscriptshell_QTreeWidget.h

src/libs_3rdparty/qtbindings_gui/src/qtscriptshell_QTreeWidgetItem.cpp

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src/libs_3rdparty/qtbindings_gui/src/qtscriptshell_QUndoCommand.cpp

src/libs_3rdparty/qtbindings_gui/src/qtscriptshell_QUndoCommand.h

src/libs_3rdparty/qtbindings_gui/src/qtscriptshell_QUndoGroup.cpp

src/libs_3rdparty/qtbindings_gui/src/qtscriptshell_QUndoGroup.h

src/libs_3rdparty/qtbindings_gui/src/qtscriptshell_QUndoStack.cpp

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src/libs_3rdparty/qtbindings_gui/src/qtscriptshell_QUndoView.cpp

src/libs_3rdparty/qtbindings_gui/src/qtscriptshell_QUndoView.h

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src/libs_3rdparty/qtbindings_gui/src/qtscriptshell_QWizard.cpp

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src/libs_3rdparty/qtbindings_gui/src/qtscriptshell_QWizardPage.cpp

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src/libs_3rdparty/qtbindings_xml/

src/libs_3rdparty/qtbindings_xml/qtbindings_xml.pri

src/libs_3rdparty/qtbindings_xml/qtbindings_xml.pro

src/libs_3rdparty/qtbindings_xml/src/

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src/libs_3rdparty/qtbindings_xml/src/qtscript_QDomCharacterData.cpp

src/libs_3rdparty/qtbindings_xml/src/qtscript_QDomComment.cpp

src/libs_3rdparty/qtbindings_xml/src/qtscript_QDomDocument.cpp

src/libs_3rdparty/qtbindings_xml/src/qtscript_QDomDocumentFragment.cpp

src/libs_3rdparty/qtbindings_xml/src/qtscript_QDomDocumentType.cpp

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src/libs_3rdparty/qtbindings_xml/src/qtscript_QDomNamedNodeMap.cpp

src/libs_3rdparty/qtbindings_xml/src/qtscript_QDomNode.cpp

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src/libs_3rdparty/qtbindings_xml/src/qtscript_QDomNotation.cpp

src/libs_3rdparty/qtbindings_xml/src/qtscript_QDomProcessingInstruction.cpp

src/libs_3rdparty/qtbindings_xml/src/qtscript_QDomText.cpp

src/libs_3rdparty/qtbindings_xml/src/qtscript_QXmlAttributes.cpp

src/libs_3rdparty/qtbindings_xml/src/qtscript_QXmlContentHandler.cpp

src/libs_3rdparty/qtbindings_xml/src/qtscript_QXmlDTDHandler.cpp

src/libs_3rdparty/qtbindings_xml/src/qtscript_QXmlDeclHandler.cpp

src/libs_3rdparty/qtbindings_xml/src/qtscript_QXmlDefaultHandler.cpp

src/libs_3rdparty/qtbindings_xml/src/qtscript_QXmlEntityResolver.cpp

src/libs_3rdparty/qtbindings_xml/src/qtscript_QXmlErrorHandler.cpp

src/libs_3rdparty/qtbindings_xml/src/qtscript_QXmlInputSource.cpp

src/libs_3rdparty/qtbindings_xml/src/qtscript_QXmlLexicalHandler.cpp

src/libs_3rdparty/qtbindings_xml/src/qtscript_QXmlLocator.cpp

src/libs_3rdparty/qtbindings_xml/src/qtscript_QXmlParseException.cpp

src/libs_3rdparty/qtbindings_xml/src/qtscript_QXmlReader.cpp

src/libs_3rdparty/qtbindings_xml/src/qtscript_QXmlSimpleReader.cpp

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src/libs_3rdparty/qtbindings_xml/src/qtscriptshell_QXmlDefaultHandler.h

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src/libs_3rdparty/qtbindings_xml/src/qtscriptshell_QXmlErrorHandler.h

src/libs_3rdparty/qtbindings_xml/src/qtscriptshell_QXmlInputSource.cpp

src/libs_3rdparty/qtbindings_xml/src/qtscriptshell_QXmlInputSource.h

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src/libs_3rdparty/qtbindings_xml/src/qtscriptshell_QXmlLocator.cpp

src/libs_3rdparty/qtbindings_xml/src/qtscriptshell_QXmlLocator.h

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src/plugins/assembly_browser/src/CoverageInfo.cpp

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src/plugins/assembly_browser/src/CoveredRegionsManager.cpp

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src/plugins/assembly_browser/src/ExportReadsDialog.cpp

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src/plugins/assembly_browser/src/ShortReadIterator.cpp

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src/plugins/assembly_browser/src/ZoomableAssemblyOverview.cpp

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src/plugins/biostruct3d_view/src/BioStruct3DSubsetEditor.cpp

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src/plugins/biostruct3d_view/src/ExportImage3DGLDialog.cpp

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src/plugins/biostruct3d_view/src/ExportImageDialog.h

src/plugins/biostruct3d_view/src/GLFrameManager.cpp

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src/plugins/biostruct3d_view/src/GraphicUtils.cpp

src/plugins/biostruct3d_view/src/GraphicUtils.h

src/plugins/biostruct3d_view/src/MolecularSurfaceRenderer.cpp

src/plugins/biostruct3d_view/src/MolecularSurfaceRenderer.h

src/plugins/biostruct3d_view/src/SelectModelsDialog.cpp

src/plugins/biostruct3d_view/src/SelectModelsDialog.h

src/plugins/biostruct3d_view/src/SettingsDialog.cpp

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src/plugins/biostruct3d_view/src/StructuralAlignmentDialog.cpp

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src/plugins/biostruct3d_view/src/TubeGLRenderer.cpp

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src/plugins/biostruct3d_view/src/VanDerWaalsGLRenderer.cpp

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src/plugins/biostruct3d_view/src/ui/ExportImageDialog.ui

src/plugins/biostruct3d_view/src/ui/SelectModelsDialog.ui

src/plugins/biostruct3d_view/src/ui/SettingsDialog.ui

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src/plugins/biostruct3d_view/transl/english.ts

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src/plugins/circular_view/

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src/plugins/circular_view/src/CircularItems.cpp

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src/plugins/circular_view/src/CircularView.cpp

src/plugins/circular_view/src/CircularView.h

src/plugins/circular_view/src/CircularViewPlugin.cpp

src/plugins/circular_view/src/CircularViewPlugin.h

src/plugins/circular_view/src/CircularViewSplitter.cpp

src/plugins/circular_view/src/CircularViewSplitter.h

src/plugins/circular_view/src/ExportImageCircularViewDialog.cpp

src/plugins/circular_view/src/ExportImageCircularViewDialog.h

src/plugins/circular_view/src/RestrictionMapWidget.cpp

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src/plugins/circular_view/transl/

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src/plugins/cuda_support/

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src/plugins/cuda_support/src/CudaSupportSettingsController.cpp

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src/plugins/dbi_bam/

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src/plugins/dbi_bam/src/SamReader.cpp

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src/plugins/dna_export/dna_export.pri

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src/plugins/dna_export/src/DNAExportTask.cpp

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src/plugins/dna_export/src/DNASequenceGenerator.cpp

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src/plugins/dna_export/src/ExportAnnotations2CSVTask.cpp

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src/plugins/dna_export/src/ExportMSA2MSADialog.cpp

src/plugins/dna_export/src/ExportMSA2MSADialog.h

src/plugins/dna_export/src/ExportMSA2SequencesDialog.cpp

src/plugins/dna_export/src/ExportMSA2SequencesDialog.h

src/plugins/dna_export/src/ExportProjectViewItems.cpp

src/plugins/dna_export/src/ExportProjectViewItems.h

src/plugins/dna_export/src/ExportSequenceTask.cpp

src/plugins/dna_export/src/ExportSequenceTask.h

src/plugins/dna_export/src/ExportSequenceViewItems.cpp

src/plugins/dna_export/src/ExportSequenceViewItems.h

src/plugins/dna_export/src/ExportSequences2MSADialog.cpp

src/plugins/dna_export/src/ExportSequences2MSADialog.h

src/plugins/dna_export/src/ExportSequencesDialog.cpp

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src/plugins/dna_export/src/ExportTasks.cpp

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src/plugins/dna_export/src/ExportUtils.cpp

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src/plugins/dna_export/src/GenerateDNAWorker.cpp

src/plugins/dna_export/src/GenerateDNAWorker.h

src/plugins/dna_export/src/GetSequenceByIdDialog.cpp

src/plugins/dna_export/src/GetSequenceByIdDialog.h

src/plugins/dna_export/src/ImportAnnotationsFromCSVDialog.cpp

src/plugins/dna_export/src/ImportAnnotationsFromCSVDialog.h

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src/plugins/dna_export/src/WriteAnnotationsWorker.cpp

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src/plugins/dna_export/src/ui/BaseContentDialog.ui

src/plugins/dna_export/src/ui/CSVColumnConfigurationDialog.ui

src/plugins/dna_export/src/ui/DNAExportDialog.ui

src/plugins/dna_export/src/ui/DNASequenceGeneratorDialog.ui

src/plugins/dna_export/src/ui/ExportAnnotationsDialog.ui

src/plugins/dna_export/src/ui/ExportChromatogramDialog.ui

src/plugins/dna_export/src/ui/ExportMSA2MSADialog.ui

src/plugins/dna_export/src/ui/ExportMSA2SequencesDialog.ui

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src/plugins/dna_export/src/ui/GetSequenceByIdDialog.ui

src/plugins/dna_export/src/ui/ImportAnnotationsFromCSVDialog.ui

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src/plugins/dna_flexibility/images/

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src/plugins/dna_flexibility/src/DNAFlexTask.cpp

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src/plugins/dna_flexibility/src/FindHighFlexRegions.cpp

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src/plugins/dna_flexibility/src/FindHighFlexRegionsAlgorithm.h

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src/plugins/dna_flexibility/src/HighFlexSettings.cpp

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src/plugins/dna_flexibility/src/ui/

src/plugins/dna_flexibility/src/ui/DNAFlexDialog.ui

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src/plugins/dna_stat/src/ui/

src/plugins/dna_stat/src/ui/DNAStatMSAProfileDialog.ui

src/plugins/dna_stat/src/ui/DistanceMatrixMSAProfileDialog.ui

src/plugins/dna_stat/transl/

src/plugins/dna_stat/transl/czech.ts

src/plugins/dna_stat/transl/english.ts

src/plugins/dna_stat/transl/russian.ts

src/plugins/dotplot/

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src/plugins/dotplot/dotplot.pro

src/plugins/dotplot/dotplot.qrc

src/plugins/dotplot/images/

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src/plugins/dotplot/images/exit.png

src/plugins/dotplot/images/hand_icon.png

src/plugins/dotplot/images/lock.png

src/plugins/dotplot/src/

src/plugins/dotplot/src/DotPlotClasses.cpp

src/plugins/dotplot/src/DotPlotClasses.h

src/plugins/dotplot/src/DotPlotDialog.cpp

src/plugins/dotplot/src/DotPlotDialog.h

src/plugins/dotplot/src/DotPlotFilesDialog.cpp

src/plugins/dotplot/src/DotPlotFilesDialog.h

src/plugins/dotplot/src/DotPlotPlugin.cpp

src/plugins/dotplot/src/DotPlotPlugin.h

src/plugins/dotplot/src/DotPlotSplitter.cpp

src/plugins/dotplot/src/DotPlotSplitter.h

src/plugins/dotplot/src/DotPlotTasks.cpp

src/plugins/dotplot/src/DotPlotTasks.h

src/plugins/dotplot/src/DotPlotWidget.cpp

src/plugins/dotplot/src/DotPlotWidget.h

src/plugins/dotplot/src/ui/

src/plugins/dotplot/src/ui/DotPlotDialog.ui

src/plugins/dotplot/src/ui/DotPlotFilesDialog.ui

src/plugins/dotplot/transl/

src/plugins/dotplot/transl/czech.ts

src/plugins/dotplot/transl/english.ts

src/plugins/dotplot/transl/russian.ts

src/plugins/enzymes/

src/plugins/enzymes/enzymes.pri

src/plugins/enzymes/enzymes.pro

src/plugins/enzymes/enzymes.qrc

src/plugins/enzymes/images/

src/plugins/enzymes/images/enzymes.png

src/plugins/enzymes/src/

src/plugins/enzymes/src/CloningUtilTasks.cpp

src/plugins/enzymes/src/CloningUtilTasks.h

src/plugins/enzymes/src/ConstructMoleculeDialog.cpp

src/plugins/enzymes/src/ConstructMoleculeDialog.h

src/plugins/enzymes/src/CreateFragmentDialog.cpp

src/plugins/enzymes/src/CreateFragmentDialog.h

src/plugins/enzymes/src/DNAFragment.cpp

src/plugins/enzymes/src/DNAFragment.h

src/plugins/enzymes/src/DigestSequenceDialog.cpp

src/plugins/enzymes/src/DigestSequenceDialog.h

src/plugins/enzymes/src/EditFragmentDialog.cpp

src/plugins/enzymes/src/EditFragmentDialog.h

src/plugins/enzymes/src/EnzymesIO.cpp

src/plugins/enzymes/src/EnzymesIO.h

src/plugins/enzymes/src/EnzymesPlugin.cpp

src/plugins/enzymes/src/EnzymesPlugin.h

src/plugins/enzymes/src/EnzymesQuery.cpp

src/plugins/enzymes/src/EnzymesQuery.h

src/plugins/enzymes/src/EnzymesTests.cpp

src/plugins/enzymes/src/EnzymesTests.h

src/plugins/enzymes/src/FindEnzymesAlgorithm.h

src/plugins/enzymes/src/FindEnzymesDialog.cpp

src/plugins/enzymes/src/FindEnzymesDialog.h

src/plugins/enzymes/src/FindEnzymesTask.cpp

src/plugins/enzymes/src/FindEnzymesTask.h

src/plugins/enzymes/src/ui/

src/plugins/enzymes/src/ui/ConstructMoleculeDialog.ui

src/plugins/enzymes/src/ui/CreateFragmentDialog.ui

src/plugins/enzymes/src/ui/DigestSequenceDialog.ui

src/plugins/enzymes/src/ui/EditFragmentDialog.ui

src/plugins/enzymes/src/ui/EnzymesSelectorDialog.ui

src/plugins/enzymes/src/ui/EnzymesSelectorWidget.ui

src/plugins/enzymes/src/ui/FindEnzymesDialog.ui

src/plugins/enzymes/transl/

src/plugins/enzymes/transl/czech.ts

src/plugins/enzymes/transl/english.ts

src/plugins/enzymes/transl/russian.ts

src/plugins/expert_discovery/

src/plugins/expert_discovery/expert_discovery.pri

src/plugins/expert_discovery/expert_discovery.pro

src/plugins/expert_discovery/expert_discovery.qrc

src/plugins/expert_discovery/images/

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src/plugins/expert_discovery/images/distance.ico

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src/plugins/expert_discovery/images/extractSignals.ico

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src/plugins/expert_discovery/images/extractSignals2.ico

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src/plugins/expert_discovery/images/filenew.png

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src/plugins/expert_discovery/images/filesave.png

src/plugins/expert_discovery/images/folder.ico

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src/plugins/expert_discovery/images/genRep.ico

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src/plugins/expert_discovery/images/interval.ico

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src/plugins/expert_discovery/images/loadControlsSeq.ico

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src/plugins/expert_discovery/images/loadControlsSeqAnnot.ico

src/plugins/expert_discovery/images/loadControlsSeqAnnot.png

src/plugins/expert_discovery/images/loadMarkup.ico

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src/plugins/expert_discovery/images/mrkroot.ico

src/plugins/expert_discovery/images/mrkroot.png

src/plugins/expert_discovery/images/negseq.ico

src/plugins/expert_discovery/images/negseq.png

src/plugins/expert_discovery/images/newDoc.ico

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src/plugins/expert_discovery/images/optRecBound.ico

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src/plugins/expert_discovery/images/posseq.ico

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src/plugins/expert_discovery/images/repetition.ico

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src/plugins/expert_discovery/images/sequence.ico

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src/plugins/expert_discovery/src/

src/plugins/expert_discovery/src/DDisc/

src/plugins/expert_discovery/src/DDisc/Context.cpp

src/plugins/expert_discovery/src/DDisc/Context.h

src/plugins/expert_discovery/src/DDisc/Definitions.cpp

src/plugins/expert_discovery/src/DDisc/Extractor.cpp

src/plugins/expert_discovery/src/DDisc/Extractor.h

src/plugins/expert_discovery/src/DDisc/MetaInfo.cpp

src/plugins/expert_discovery/src/DDisc/MetaInfo.h

src/plugins/expert_discovery/src/DDisc/Sequence.cpp

src/plugins/expert_discovery/src/DDisc/Sequence.h

src/plugins/expert_discovery/src/DDisc/Signal.cpp

src/plugins/expert_discovery/src/DDisc/Signal.h

src/plugins/expert_discovery/src/DDisc/definitions.h

src/plugins/expert_discovery/src/DDisc/statmath.cpp

src/plugins/expert_discovery/src/DDisc/statmath.h

src/plugins/expert_discovery/src/ExpertDiscoveryAdvSetDialog.cpp

src/plugins/expert_discovery/src/ExpertDiscoveryAdvSetDialog.h

src/plugins/expert_discovery/src/ExpertDiscoveryCSUtil.cpp

src/plugins/expert_discovery/src/ExpertDiscoveryCSUtil.h

src/plugins/expert_discovery/src/ExpertDiscoveryControlDialog.cpp

src/plugins/expert_discovery/src/ExpertDiscoveryControlDialog.h

src/plugins/expert_discovery/src/ExpertDiscoveryControlMrkDialog.cpp

src/plugins/expert_discovery/src/ExpertDiscoveryControlMrkDialog.h

src/plugins/expert_discovery/src/ExpertDiscoveryData.cpp

src/plugins/expert_discovery/src/ExpertDiscoveryData.h

src/plugins/expert_discovery/src/ExpertDiscoveryExtSigWiz.cpp

src/plugins/expert_discovery/src/ExpertDiscoveryExtSigWiz.h

src/plugins/expert_discovery/src/ExpertDiscoveryPersistent.cpp

src/plugins/expert_discovery/src/ExpertDiscoveryPersistent.h

src/plugins/expert_discovery/src/ExpertDiscoveryPlugin.cpp

src/plugins/expert_discovery/src/ExpertDiscoveryPlugin.h

src/plugins/expert_discovery/src/ExpertDiscoveryPosNegDialog.cpp

src/plugins/expert_discovery/src/ExpertDiscoveryPosNegDialog.h

src/plugins/expert_discovery/src/ExpertDiscoveryPosNegMrkDialog.cpp

src/plugins/expert_discovery/src/ExpertDiscoveryPosNegMrkDialog.h

src/plugins/expert_discovery/src/ExpertDiscoveryPropTable.cpp

src/plugins/expert_discovery/src/ExpertDiscoveryPropTable.h

src/plugins/expert_discovery/src/ExpertDiscoverySet.cpp

src/plugins/expert_discovery/src/ExpertDiscoverySet.h

src/plugins/expert_discovery/src/ExpertDiscoverySetupRecBoundDialog.cpp

src/plugins/expert_discovery/src/ExpertDiscoverySetupRecBoundDialog.h

src/plugins/expert_discovery/src/ExpertDiscoveryTask.cpp

src/plugins/expert_discovery/src/ExpertDiscoveryTask.h

src/plugins/expert_discovery/src/ExpertDiscoveryTreeWidgets.cpp

src/plugins/expert_discovery/src/ExpertDiscoveryTreeWidgets.h

src/plugins/expert_discovery/src/ExpertDiscoveryTreeWidgetsCtrl.cpp

src/plugins/expert_discovery/src/ExpertDiscoveryTreeWidgetsCtrl.h

src/plugins/expert_discovery/src/ExpertDiscoveryView.cpp

src/plugins/expert_discovery/src/ExpertDiscoveryView.h

src/plugins/expert_discovery/src/ExpertDiscoveryViewCtx.cpp

src/plugins/expert_discovery/src/ExpertDiscoveryViewCtx.h

src/plugins/expert_discovery/src/ui/

src/plugins/expert_discovery/src/ui/ExpertDiscoveryAdvSetDialog.ui

src/plugins/expert_discovery/src/ui/ExpertDiscoveryControlDialog.ui

src/plugins/expert_discovery/src/ui/ExpertDiscoveryControlMrkDialog.ui

src/plugins/expert_discovery/src/ui/ExpertDiscoveryPosNegDialog.ui

src/plugins/expert_discovery/src/ui/ExpertDiscoveryPosNegMrkDialog.ui

src/plugins/expert_discovery/src/ui/ExpertDiscoverySetupRecBoundDialog.ui

src/plugins/expert_discovery/src/ui/ExpertDiscoverySigExtrWiz.ui

src/plugins/expert_discovery/transl/

src/plugins/expert_discovery/transl/czech.ts

src/plugins/expert_discovery/transl/english.ts

src/plugins/expert_discovery/transl/russian.ts

src/plugins/external_tool_support/

src/plugins/external_tool_support/external_tool_support.pri

src/plugins/external_tool_support/external_tool_support.pro

src/plugins/external_tool_support/external_tool_support.qrc

src/plugins/external_tool_support/images/

src/plugins/external_tool_support/images/cancel.png

src/plugins/external_tool_support/images/clustalx.jpg

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src/plugins/external_tool_support/images/clustalx_gray.png

src/plugins/external_tool_support/images/clustalx_warn.png

src/plugins/external_tool_support/images/cmdline.png

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src/plugins/external_tool_support/images/cmdline_warn.png

src/plugins/external_tool_support/images/editdelete.png

src/plugins/external_tool_support/images/ncbi.png

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src/plugins/external_tool_support/images/ncbi_warn.png

src/plugins/external_tool_support/images/tcoffee.png

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src/plugins/external_tool_support/images/tcoffee_warn.png

src/plugins/external_tool_support/src/

src/plugins/external_tool_support/src/ETSProjectViewItemsContoller.cpp

src/plugins/external_tool_support/src/ETSProjectViewItemsContoller.h

src/plugins/external_tool_support/src/ExternalToolRunTask.cpp

src/plugins/external_tool_support/src/ExternalToolRunTask.h

src/plugins/external_tool_support/src/ExternalToolSupportPlugin.cpp

src/plugins/external_tool_support/src/ExternalToolSupportPlugin.h

src/plugins/external_tool_support/src/ExternalToolSupportSettings.cpp

src/plugins/external_tool_support/src/ExternalToolSupportSettings.h

src/plugins/external_tool_support/src/ExternalToolSupportSettingsController.cpp

src/plugins/external_tool_support/src/ExternalToolSupportSettingsController.h

src/plugins/external_tool_support/src/TaskLocalStorage.cpp

src/plugins/external_tool_support/src/TaskLocalStorage.h

src/plugins/external_tool_support/src/blast/

src/plugins/external_tool_support/src/blast/BlastAllSupport.cpp

src/plugins/external_tool_support/src/blast/BlastAllSupport.h

src/plugins/external_tool_support/src/blast/BlastAllSupportRunDialog.cpp

src/plugins/external_tool_support/src/blast/BlastAllSupportRunDialog.h

src/plugins/external_tool_support/src/blast/BlastAllSupportTask.cpp

src/plugins/external_tool_support/src/blast/BlastAllSupportTask.h

src/plugins/external_tool_support/src/blast/BlastAllWorker.cpp

src/plugins/external_tool_support/src/blast/BlastAllWorker.h

src/plugins/external_tool_support/src/blast/FormatDBSupport.cpp

src/plugins/external_tool_support/src/blast/FormatDBSupport.h

src/plugins/external_tool_support/src/blast/FormatDBSupportRunDialog.cpp

src/plugins/external_tool_support/src/blast/FormatDBSupportRunDialog.h

src/plugins/external_tool_support/src/blast/FormatDBSupportTask.cpp

src/plugins/external_tool_support/src/blast/FormatDBSupportTask.h

src/plugins/external_tool_support/src/blast_plus/

src/plugins/external_tool_support/src/blast_plus/BlastNPlusSupportTask.cpp

src/plugins/external_tool_support/src/blast_plus/BlastNPlusSupportTask.h

src/plugins/external_tool_support/src/blast_plus/BlastPPlusSupportTask.cpp

src/plugins/external_tool_support/src/blast_plus/BlastPPlusSupportTask.h

src/plugins/external_tool_support/src/blast_plus/BlastPlusSupport.cpp

src/plugins/external_tool_support/src/blast_plus/BlastPlusSupport.h

src/plugins/external_tool_support/src/blast_plus/BlastPlusSupportCommonTask.cpp

src/plugins/external_tool_support/src/blast_plus/BlastPlusSupportCommonTask.h

src/plugins/external_tool_support/src/blast_plus/BlastPlusSupportRunDialog.cpp

src/plugins/external_tool_support/src/blast_plus/BlastPlusSupportRunDialog.h

src/plugins/external_tool_support/src/blast_plus/BlastPlusWorker.cpp

src/plugins/external_tool_support/src/blast_plus/BlastPlusWorker.h

src/plugins/external_tool_support/src/blast_plus/BlastXPlusSupportTask.cpp

src/plugins/external_tool_support/src/blast_plus/BlastXPlusSupportTask.h

src/plugins/external_tool_support/src/blast_plus/RPSBlastSupportTask.cpp

src/plugins/external_tool_support/src/blast_plus/RPSBlastSupportTask.h

src/plugins/external_tool_support/src/blast_plus/TBlastNPlusSupportTask.cpp

src/plugins/external_tool_support/src/blast_plus/TBlastNPlusSupportTask.h

src/plugins/external_tool_support/src/blast_plus/TBlastXPlusSupportTask.cpp

src/plugins/external_tool_support/src/blast_plus/TBlastXPlusSupportTask.h

src/plugins/external_tool_support/src/cap3/

src/plugins/external_tool_support/src/cap3/CAP3Support.cpp

src/plugins/external_tool_support/src/cap3/CAP3Support.h

src/plugins/external_tool_support/src/cap3/CAP3SupportDialog.cpp

src/plugins/external_tool_support/src/cap3/CAP3SupportDialog.h

src/plugins/external_tool_support/src/cap3/CAP3SupportTask.cpp

src/plugins/external_tool_support/src/cap3/CAP3SupportTask.h

src/plugins/external_tool_support/src/cap3/CAP3Worker.cpp

src/plugins/external_tool_support/src/cap3/CAP3Worker.h

src/plugins/external_tool_support/src/clustalw/

src/plugins/external_tool_support/src/clustalw/ClustalWSupport.cpp

src/plugins/external_tool_support/src/clustalw/ClustalWSupport.h

src/plugins/external_tool_support/src/clustalw/ClustalWSupportRunDialog.cpp

src/plugins/external_tool_support/src/clustalw/ClustalWSupportRunDialog.h

src/plugins/external_tool_support/src/clustalw/ClustalWSupportTask.cpp

src/plugins/external_tool_support/src/clustalw/ClustalWSupportTask.h

src/plugins/external_tool_support/src/clustalw/ClustalWWorker.cpp

src/plugins/external_tool_support/src/clustalw/ClustalWWorker.h

src/plugins/external_tool_support/src/mafft/

src/plugins/external_tool_support/src/mafft/MAFFTSupport.cpp

src/plugins/external_tool_support/src/mafft/MAFFTSupport.h

src/plugins/external_tool_support/src/mafft/MAFFTSupportRunDialog.cpp

src/plugins/external_tool_support/src/mafft/MAFFTSupportRunDialog.h

src/plugins/external_tool_support/src/mafft/MAFFTSupportTask.cpp

src/plugins/external_tool_support/src/mafft/MAFFTSupportTask.h

src/plugins/external_tool_support/src/mafft/MAFFTWorker.cpp

src/plugins/external_tool_support/src/mafft/MAFFTWorker.h

src/plugins/external_tool_support/src/tcoffee/

src/plugins/external_tool_support/src/tcoffee/TCoffeeSupport.cpp

src/plugins/external_tool_support/src/tcoffee/TCoffeeSupport.h

src/plugins/external_tool_support/src/tcoffee/TCoffeeSupportRunDialog.cpp

src/plugins/external_tool_support/src/tcoffee/TCoffeeSupportRunDialog.h

src/plugins/external_tool_support/src/tcoffee/TCoffeeSupportTask.cpp

src/plugins/external_tool_support/src/tcoffee/TCoffeeSupportTask.h

src/plugins/external_tool_support/src/tcoffee/TCoffeeWorker.cpp

src/plugins/external_tool_support/src/tcoffee/TCoffeeWorker.h

src/plugins/external_tool_support/src/ui/

src/plugins/external_tool_support/src/ui/BlastAllSupportDialog.ui

src/plugins/external_tool_support/src/ui/CAP3SupportDialog.ui

src/plugins/external_tool_support/src/ui/ClustalWSupportRunDialog.ui

src/plugins/external_tool_support/src/ui/ETSSettingsWidget.ui

src/plugins/external_tool_support/src/ui/FormatDBSupportRunDialog.ui

src/plugins/external_tool_support/src/ui/MAFFTSupportRunDialog.ui

src/plugins/external_tool_support/src/ui/SelectPathDialog.ui

src/plugins/external_tool_support/src/ui/TCoffeeSupportRunDialog.ui

src/plugins/external_tool_support/src/utils/

src/plugins/external_tool_support/src/utils/BlastRunCommonDialog.cpp

src/plugins/external_tool_support/src/utils/BlastRunCommonDialog.h

src/plugins/external_tool_support/src/utils/BlastTaskSettings.cpp

src/plugins/external_tool_support/src/utils/BlastTaskSettings.h

src/plugins/external_tool_support/src/utils/ExportTasks.cpp

src/plugins/external_tool_support/src/utils/ExportTasks.h

src/plugins/external_tool_support/src/utils/ExternalToolSupportAction.cpp

src/plugins/external_tool_support/src/utils/ExternalToolSupportAction.h

src/plugins/external_tool_support/src/utils/ExternalToolValidateTask.cpp

src/plugins/external_tool_support/src/utils/ExternalToolValidateTask.h

src/plugins/external_tool_support/transl/

src/plugins/external_tool_support/transl/english.ts

src/plugins/external_tool_support/transl/russian.ts

src/plugins/genome_aligner/

src/plugins/genome_aligner/genome_aligner.pri

src/plugins/genome_aligner/genome_aligner.pro

src/plugins/genome_aligner/src/

src/plugins/genome_aligner/src/BuildSArraySettingsWidget.cpp

src/plugins/genome_aligner/src/BuildSArraySettingsWidget.h

src/plugins/genome_aligner/src/GenomeAlignerCMDLineTask.cpp

src/plugins/genome_aligner/src/GenomeAlignerCMDLineTask.h

src/plugins/genome_aligner/src/GenomeAlignerFindTask.cpp

src/plugins/genome_aligner/src/GenomeAlignerFindTask.h

src/plugins/genome_aligner/src/GenomeAlignerIO.cpp

src/plugins/genome_aligner/src/GenomeAlignerIO.h

src/plugins/genome_aligner/src/GenomeAlignerIndex.cpp

src/plugins/genome_aligner/src/GenomeAlignerIndex.h

src/plugins/genome_aligner/src/GenomeAlignerIndexPart.cpp

src/plugins/genome_aligner/src/GenomeAlignerIndexPart.h

src/plugins/genome_aligner/src/GenomeAlignerIndexTask.cpp

src/plugins/genome_aligner/src/GenomeAlignerIndexTask.h

src/plugins/genome_aligner/src/GenomeAlignerPlugin.cpp

src/plugins/genome_aligner/src/GenomeAlignerPlugin.h

src/plugins/genome_aligner/src/GenomeAlignerSearchQuery.cpp

src/plugins/genome_aligner/src/GenomeAlignerSearchQuery.h

src/plugins/genome_aligner/src/GenomeAlignerSettingsWidget.cpp

src/plugins/genome_aligner/src/GenomeAlignerSettingsWidget.h

src/plugins/genome_aligner/src/GenomeAlignerTask.cpp

src/plugins/genome_aligner/src/GenomeAlignerTask.h

src/plugins/genome_aligner/src/GenomeAlignerWorker.cpp

src/plugins/genome_aligner/src/GenomeAlignerWorker.h

src/plugins/genome_aligner/src/GenomeAlignerWriteTask.cpp

src/plugins/genome_aligner/src/GenomeAlignerWriteTask.h

src/plugins/genome_aligner/src/SuffixSearchCUDA.cpp

src/plugins/genome_aligner/src/SuffixSearchCUDA.h

src/plugins/genome_aligner/src/suffix_search.cu

src/plugins/genome_aligner/src/ui/

src/plugins/genome_aligner/src/ui/BuildSuffixArraySettings.ui

src/plugins/genome_aligner/src/ui/GenomeAlignerSettings.ui

src/plugins/genome_aligner/transl/

src/plugins/genome_aligner/transl/english.ts

src/plugins/genome_aligner/transl/russian.ts

src/plugins/opencl_support/

src/plugins/opencl_support/opencl_support.pri

src/plugins/opencl_support/opencl_support.pro

src/plugins/opencl_support/src/

src/plugins/opencl_support/src/OpenCLSupportPlugin.cpp

src/plugins/opencl_support/src/OpenCLSupportPlugin.h

src/plugins/opencl_support/src/OpenCLSupportSettingsController.cpp

src/plugins/opencl_support/src/OpenCLSupportSettingsController.h

src/plugins/opencl_support/transl/

src/plugins/opencl_support/transl/czech.ts

src/plugins/opencl_support/transl/english.ts

src/plugins/opencl_support/transl/russian.ts

src/plugins/orf_marker/orf_marker.pri

src/plugins/orf_marker/orf_marker.pro

src/plugins/orf_marker/src/ORFDialog.cpp

src/plugins/orf_marker/src/ORFDialog.h

src/plugins/orf_marker/src/ORFMarkerPlugin.cpp

src/plugins/orf_marker/src/ORFMarkerPlugin.h

src/plugins/orf_marker/src/ORFMarkerTask.cpp

src/plugins/orf_marker/src/ORFMarkerTask.h

src/plugins/orf_marker/src/ORFMarkerTests.cpp

src/plugins/orf_marker/src/ORFMarkerTests.h

src/plugins/orf_marker/src/ORFQuery.cpp

src/plugins/orf_marker/src/ORFQuery.h

src/plugins/orf_marker/src/ORFWorker.cpp

src/plugins/orf_marker/src/ORFWorker.h

src/plugins/orf_marker/src/ui/ORFDialogUI.ui

src/plugins/orf_marker/transl/czech.ts

src/plugins/orf_marker/transl/english.ts

src/plugins/orf_marker/transl/russian.ts

src/plugins/query_designer/

src/plugins/query_designer/images/

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src/plugins/query_designer/images/eye.png

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src/plugins/query_designer/images/fileopen.png

src/plugins/query_designer/images/filesave.png

src/plugins/query_designer/images/green_circle.png

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src/plugins/query_designer/images/run.png

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src/plugins/query_designer/query_designer.pro

src/plugins/query_designer/query_designer.qrc

src/plugins/query_designer/src/

src/plugins/query_designer/src/QDDocument.cpp

src/plugins/query_designer/src/QDDocument.h

src/plugins/query_designer/src/QDDocumentFormat.cpp

src/plugins/query_designer/src/QDDocumentFormat.h

src/plugins/query_designer/src/QDGroupsEditor.cpp

src/plugins/query_designer/src/QDGroupsEditor.h

src/plugins/query_designer/src/QDRunDialog.cpp

src/plugins/query_designer/src/QDRunDialog.h

src/plugins/query_designer/src/QDSamples.cpp

src/plugins/query_designer/src/QDSamples.h

src/plugins/query_designer/src/QDSceneIOTasks.cpp

src/plugins/query_designer/src/QDSceneIOTasks.h

src/plugins/query_designer/src/QDTests.cpp

src/plugins/query_designer/src/QDTests.h

src/plugins/query_designer/src/QDWorker.cpp

src/plugins/query_designer/src/QDWorker.h

src/plugins/query_designer/src/QueryDesignerPlugin.cpp

src/plugins/query_designer/src/QueryDesignerPlugin.h

src/plugins/query_designer/src/QueryEditor.cpp

src/plugins/query_designer/src/QueryEditor.h

src/plugins/query_designer/src/QueryPalette.cpp

src/plugins/query_designer/src/QueryPalette.h

src/plugins/query_designer/src/QueryProcCfgDelegate.h

src/plugins/query_designer/src/QueryProcCfgModel.h

src/plugins/query_designer/src/QueryViewAdapter.cpp

src/plugins/query_designer/src/QueryViewAdapter.h

src/plugins/query_designer/src/QueryViewController.cpp

src/plugins/query_designer/src/QueryViewController.h

src/plugins/query_designer/src/QueryViewItems.cpp

src/plugins/query_designer/src/QueryViewItems.h

src/plugins/query_designer/src/library/

src/plugins/query_designer/src/library/QDFindActor.cpp

src/plugins/query_designer/src/library/QDFindActor.h

src/plugins/query_designer/src/library/QDFindPolyRegionsActor.cpp

src/plugins/query_designer/src/library/QDFindPolyRegionsActor.h

src/plugins/query_designer/src/ui/

src/plugins/query_designer/src/ui/AddConstraintDialog.ui

src/plugins/query_designer/src/ui/QDDialog.ui

src/plugins/query_designer/src/ui/QueryEditorWidget.ui

src/plugins/query_designer/src/ui/RunQueryDialog.ui

src/plugins/query_designer/transl/

src/plugins/query_designer/transl/english.ts

src/plugins/query_designer/transl/russian.ts

src/plugins/remote_blast/

src/plugins/remote_blast/images/

src/plugins/remote_blast/images/down_arrow.png

src/plugins/remote_blast/images/remote_db_request.png

src/plugins/remote_blast/images/up_arrow.png

src/plugins/remote_blast/remote_blast.pri

src/plugins/remote_blast/remote_blast.pro

src/plugins/remote_blast/remote_blast.qrc

src/plugins/remote_blast/src/

src/plugins/remote_blast/src/BlastQuery.cpp

src/plugins/remote_blast/src/BlastQuery.h

src/plugins/remote_blast/src/DBRequestFactory.h

src/plugins/remote_blast/src/HttpRequest.h

src/plugins/remote_blast/src/HttpRequestBLAST.cpp

src/plugins/remote_blast/src/HttpRequestCDD.cpp

src/plugins/remote_blast/src/RemoteBLASTConsts.cpp

src/plugins/remote_blast/src/RemoteBLASTConsts.h

src/plugins/remote_blast/src/RemoteBLASTPlugin.cpp

src/plugins/remote_blast/src/RemoteBLASTPlugin.h

src/plugins/remote_blast/src/RemoteBLASTPluginTests.cpp

src/plugins/remote_blast/src/RemoteBLASTPluginTests.h

src/plugins/remote_blast/src/RemoteBLASTTask.cpp

src/plugins/remote_blast/src/RemoteBLASTTask.h

src/plugins/remote_blast/src/RemoteBLASTWorker.cpp

src/plugins/remote_blast/src/RemoteBLASTWorker.h

src/plugins/remote_blast/src/SendSelectionDialog.cpp

src/plugins/remote_blast/src/SendSelectionDialog.h

src/plugins/remote_blast/src/ui/

src/plugins/remote_blast/src/ui/RemoteBLASTDialog.ui

src/plugins/remote_blast/transl/

src/plugins/remote_blast/transl/czech.ts

src/plugins/remote_blast/transl/english.ts

src/plugins/remote_blast/transl/russian.ts

src/plugins/remote_request/

src/plugins/remote_request/images/

src/plugins/remote_request/images/remote_db_request.png

src/plugins/remote_request/remote_request.pri

src/plugins/remote_request/remote_request.pro

src/plugins/remote_request/remote_request.qrc

src/plugins/remote_request/src/

src/plugins/remote_request/src/RemoteRequestPlugin.cpp

src/plugins/remote_request/src/RemoteRequestPlugin.h

src/plugins/remote_request/src/RemoteRequestPluginTests.cpp

src/plugins/remote_request/src/RemoteRequestPluginTests.h

src/plugins/remote_request/src/RemoteRequestTask.cpp

src/plugins/remote_request/src/RemoteRequestTask.h

src/plugins/remote_request/src/ScriptEngineContext.cpp

src/plugins/remote_request/src/ScriptEngineContext.h

src/plugins/remote_request/src/SendSelectionDialogImpl.cpp

src/plugins/remote_request/src/SendSelectionDialogImpl.h

src/plugins/remote_request/src/ui/

src/plugins/remote_request/src/ui/SendSelectionDialog.ui

src/plugins/remote_request/transl/

src/plugins/remote_request/transl/english.ts

src/plugins/remote_request/transl/russian.ts

src/plugins/remote_service/

src/plugins/remote_service/remote_service.pri

src/plugins/remote_service/remote_service.pro

src/plugins/remote_service/src/

src/plugins/remote_service/src/Base64File.cpp

src/plugins/remote_service/src/Base64File.h

src/plugins/remote_service/src/BufferedDataReader.cpp

src/plugins/remote_service/src/BufferedDataReader.h

src/plugins/remote_service/src/RemoteServiceCommon.h

src/plugins/remote_service/src/RemoteServiceMachine.cpp

src/plugins/remote_service/src/RemoteServiceMachine.h

src/plugins/remote_service/src/RemoteServicePingTask.cpp

src/plugins/remote_service/src/RemoteServicePingTask.h

src/plugins/remote_service/src/RemoteServicePlugin.cpp

src/plugins/remote_service/src/RemoteServicePlugin.h

src/plugins/remote_service/src/RemoteServiceSettingsUI.cpp

src/plugins/remote_service/src/RemoteServiceSettingsUI.h

src/plugins/remote_service/src/RemoteServiceUtilTasks.cpp

src/plugins/remote_service/src/RemoteServiceUtilTasks.h

src/plugins/remote_service/src/RemoteTasksDialog.cpp

src/plugins/remote_service/src/RemoteTasksDialog.h

src/plugins/remote_service/src/UctpRequestBuilders.cpp

src/plugins/remote_service/src/UctpRequestBuilders.h

src/plugins/remote_service/src/WebTransportProtocol.cpp

src/plugins/remote_service/src/WebTransportProtocol.h

src/plugins/remote_service/src/base64/

src/plugins/remote_service/src/base64/cdecode.c

src/plugins/remote_service/src/base64/cdecode.h

src/plugins/remote_service/src/base64/cencode.c

src/plugins/remote_service/src/base64/cencode.h

src/plugins/remote_service/src/ui/

src/plugins/remote_service/src/ui/RemoteServiceSupportUI.ui

src/plugins/remote_service/src/ui/TaskStatisticsDialog.ui

src/plugins/remote_service/transl/

src/plugins/repeat_finder/images/

src/plugins/repeat_finder/images/repeats.png

src/plugins/repeat_finder/images/repeats_tandem.png

src/plugins/repeat_finder/repeat_finder.pri

src/plugins/repeat_finder/repeat_finder.pro

src/plugins/repeat_finder/repeat_finder.qrc

src/plugins/repeat_finder/src/FindRepeatsDialog.cpp

src/plugins/repeat_finder/src/FindRepeatsDialog.h

src/plugins/repeat_finder/src/FindRepeatsTask.cpp

src/plugins/repeat_finder/src/FindRepeatsTask.h

src/plugins/repeat_finder/src/FindTandemsDialog.cpp

src/plugins/repeat_finder/src/FindTandemsDialog.h

src/plugins/repeat_finder/src/RFBase.cpp

src/plugins/repeat_finder/src/RFBase.h

src/plugins/repeat_finder/src/RFConstants.h

src/plugins/repeat_finder/src/RFDiagonal.cpp

src/plugins/repeat_finder/src/RFDiagonal.h

src/plugins/repeat_finder/src/RFSArray.cpp

src/plugins/repeat_finder/src/RFSArray.h

src/plugins/repeat_finder/src/RFSArrayWK.cpp

src/plugins/repeat_finder/src/RFSArrayWK.h

src/plugins/repeat_finder/src/RFTaskFactory.cpp

src/plugins/repeat_finder/src/RFTaskFactory.h

src/plugins/repeat_finder/src/RF_BitMask.h

src/plugins/repeat_finder/src/RF_SArray_TandemFinder.cpp

src/plugins/repeat_finder/src/RF_SArray_TandemFinder.h

src/plugins/repeat_finder/src/RF_SuffixArray.cpp

src/plugins/repeat_finder/src/RF_SuffixArray.h

src/plugins/repeat_finder/src/RepeatFinder.cpp

src/plugins/repeat_finder/src/RepeatFinder.h

src/plugins/repeat_finder/src/RepeatFinderDiagonal.cpp

src/plugins/repeat_finder/src/RepeatFinderDiagonal.h

src/plugins/repeat_finder/src/RepeatFinderPlugin.cpp

src/plugins/repeat_finder/src/RepeatFinderPlugin.h

src/plugins/repeat_finder/src/RepeatFinderSArray.cpp

src/plugins/repeat_finder/src/RepeatFinderSArray.h

src/plugins/repeat_finder/src/RepeatFinderSArrayWK.cpp

src/plugins/repeat_finder/src/RepeatFinderSArrayWK.h

src/plugins/repeat_finder/src/RepeatFinderTests.cpp

src/plugins/repeat_finder/src/RepeatFinderTests.h

src/plugins/repeat_finder/src/RepeatQuery.cpp

src/plugins/repeat_finder/src/RepeatQuery.h

src/plugins/repeat_finder/src/RepeatTest.cpp

src/plugins/repeat_finder/src/RepeatTest.h

src/plugins/repeat_finder/src/RepeatWorker.cpp

src/plugins/repeat_finder/src/RepeatWorker.h

src/plugins/repeat_finder/src/SArrayIndex.cpp

src/plugins/repeat_finder/src/SArrayIndex.h

src/plugins/repeat_finder/src/ui/

src/plugins/repeat_finder/src/ui/FindRepeatsDialog.ui

src/plugins/repeat_finder/src/ui/FindTandemsDialog.ui

src/plugins/repeat_finder/transl/czech.ts

src/plugins/repeat_finder/transl/english.ts

src/plugins/repeat_finder/transl/russian.ts

src/plugins/smith_waterman/

src/plugins/smith_waterman/smith_waterman.pri

src/plugins/smith_waterman/smith_waterman.pro

src/plugins/smith_waterman/smith_waterman.qrc

src/plugins/smith_waterman/src/

src/plugins/smith_waterman/src/PairAlignSequences.cpp

src/plugins/smith_waterman/src/PairAlignSequences.h

src/plugins/smith_waterman/src/SWAlgorithmPlugin.cpp

src/plugins/smith_waterman/src/SWAlgorithmPlugin.h

src/plugins/smith_waterman/src/SWAlgorithmTask.cpp

src/plugins/smith_waterman/src/SWAlgorithmTask.h

src/plugins/smith_waterman/src/SWQuery.cpp

src/plugins/smith_waterman/src/SWQuery.h

src/plugins/smith_waterman/src/SWTaskFactory.cpp

src/plugins/smith_waterman/src/SWTaskFactory.h

src/plugins/smith_waterman/src/SWWorker.cpp

src/plugins/smith_waterman/src/SWWorker.h

src/plugins/smith_waterman/src/SmithWatermanAlgorithm.cpp

src/plugins/smith_waterman/src/SmithWatermanAlgorithm.h

src/plugins/smith_waterman/src/SmithWatermanAlgorithmCUDA.cpp

src/plugins/smith_waterman/src/SmithWatermanAlgorithmCUDA.h

src/plugins/smith_waterman/src/SmithWatermanAlgorithmOPENCL.cpp

src/plugins/smith_waterman/src/SmithWatermanAlgorithmOPENCL.h

src/plugins/smith_waterman/src/SmithWatermanAlgorithmSSE2.cpp

src/plugins/smith_waterman/src/SmithWatermanAlgorithmSSE2.h

src/plugins/smith_waterman/src/SmithWatermanTests.cpp

src/plugins/smith_waterman/src/SmithWatermanTests.h

src/plugins/smith_waterman/src/sw_cuda.cu

src/plugins/smith_waterman/src/sw_cuda_cpp.cpp

src/plugins/smith_waterman/src/sw_cuda_cpp.h

src/plugins/smith_waterman/src/sw_opencl.cl

src/plugins/smith_waterman/transl/

src/plugins/smith_waterman/transl/english.ts

src/plugins/smith_waterman/transl/russian.ts

src/plugins/test_runner/

src/plugins/test_runner/images/

src/plugins/test_runner/images/folder.png

src/plugins/test_runner/images/folder_faild.png

src/plugins/test_runner/images/folder_ok.png

src/plugins/test_runner/images/test.png

src/plugins/test_runner/images/test_faild.png

src/plugins/test_runner/images/test_ok.png

src/plugins/test_runner/resource.h

src/plugins/test_runner/src/

src/plugins/test_runner/src/TestRunnerPlugin.cpp

src/plugins/test_runner/src/TestRunnerPlugin.h

src/plugins/test_runner/src/TestRunnerTask.cpp

src/plugins/test_runner/src/TestRunnerTask.h

src/plugins/test_runner/src/TestViewController.cpp

src/plugins/test_runner/src/TestViewController.h

src/plugins/test_runner/src/TestViewReporter.cpp

src/plugins/test_runner/src/TestViewReporter.h

src/plugins/test_runner/src/ui/

src/plugins/test_runner/src/ui/Reporter.ui

src/plugins/test_runner/src/ui/TestView.ui

src/plugins/test_runner/test_runner.pri

src/plugins/test_runner/test_runner.pro

src/plugins/test_runner/test_runner.qrc

src/plugins/test_runner/transl/

src/plugins/test_runner/transl/english.ts

src/plugins/test_runner/transl/russian.ts

src/plugins/weight_matrix/

src/plugins/weight_matrix/images/

src/plugins/weight_matrix/images/weight_matrix.png

src/plugins/weight_matrix/src/

src/plugins/weight_matrix/src/PWMBuildDialogController.cpp

src/plugins/weight_matrix/src/PWMBuildDialogController.h

src/plugins/weight_matrix/src/PWMJASPARDialogController.cpp

src/plugins/weight_matrix/src/PWMJASPARDialogController.h

src/plugins/weight_matrix/src/PWMSearchDialogController.cpp

src/plugins/weight_matrix/src/PWMSearchDialogController.h

src/plugins/weight_matrix/src/SetParametersDialogController.cpp

src/plugins/weight_matrix/src/SetParametersDialogController.h

src/plugins/weight_matrix/src/ViewMatrixDialogController.cpp

src/plugins/weight_matrix/src/ViewMatrixDialogController.h

src/plugins/weight_matrix/src/WMQuery.cpp

src/plugins/weight_matrix/src/WMQuery.h

src/plugins/weight_matrix/src/WeightMatrixAlgorithm.cpp

src/plugins/weight_matrix/src/WeightMatrixAlgorithm.h

src/plugins/weight_matrix/src/WeightMatrixBuildWorker.cpp

src/plugins/weight_matrix/src/WeightMatrixIO.cpp

src/plugins/weight_matrix/src/WeightMatrixIO.h

src/plugins/weight_matrix/src/WeightMatrixIOWorkers.cpp

src/plugins/weight_matrix/src/WeightMatrixIOWorkers.h

src/plugins/weight_matrix/src/WeightMatrixPlugin.cpp

src/plugins/weight_matrix/src/WeightMatrixPlugin.h

src/plugins/weight_matrix/src/WeightMatrixSearchTask.cpp

src/plugins/weight_matrix/src/WeightMatrixSearchTask.h

src/plugins/weight_matrix/src/WeightMatrixSearchWorker.cpp

src/plugins/weight_matrix/src/WeightMatrixWorkers.h

src/plugins/weight_matrix/src/ui/

src/plugins/weight_matrix/src/ui/PWMBuildDialog.ui

src/plugins/weight_matrix/src/ui/PWMSearchDialog.ui

src/plugins/weight_matrix/src/ui/SearchJASPARDatabase.ui

src/plugins/weight_matrix/src/ui/SetDefaultParametersDialog.ui

src/plugins/weight_matrix/src/ui/ViewMatrixDialog.ui

src/plugins/weight_matrix/transl/

src/plugins/weight_matrix/transl/czech.ts

src/plugins/weight_matrix/transl/english.ts

src/plugins/weight_matrix/transl/russian.ts

src/plugins/weight_matrix/weight_matrix.pri

src/plugins/weight_matrix/weight_matrix.pro

src/plugins/weight_matrix/weight_matrix.qrc

src/plugins/workflow_designer/images/bringtofront.png

src/plugins/workflow_designer/images/external_cmd_tool.png

src/plugins/workflow_designer/images/external_cmd_tool_add.png

src/plugins/workflow_designer/images/filesaveas.png

src/plugins/workflow_designer/images/leftarrow.png

src/plugins/workflow_designer/images/script.png

src/plugins/workflow_designer/images/script_edit.png

src/plugins/workflow_designer/images/stopTask.png

src/plugins/workflow_designer/images/table_relationship.png

src/plugins/workflow_designer/images/toggle.png

src/plugins/workflow_designer/images/toggle_expand.png

src/plugins/workflow_designer/images/wd.png

src/plugins/workflow_designer/src/ActorCfgModel.cpp

src/plugins/workflow_designer/src/ActorCfgModel.h

src/plugins/workflow_designer/src/ChooseItemDialog.cpp

src/plugins/workflow_designer/src/ChooseItemDialog.h

src/plugins/workflow_designer/src/CreateScriptWorker.cpp

src/plugins/workflow_designer/src/CreateScriptWorker.h

src/plugins/workflow_designer/src/HRSceneSerializer.cpp

src/plugins/workflow_designer/src/HRSceneSerializer.h

src/plugins/workflow_designer/src/ItemViewStyle.cpp

src/plugins/workflow_designer/src/ItemViewStyle.h

src/plugins/workflow_designer/src/IterationListWidget.cpp

src/plugins/workflow_designer/src/IterationListWidget.h

src/plugins/workflow_designer/src/ProxyDelegate.h

src/plugins/workflow_designer/src/SceneSerializer.cpp

src/plugins/workflow_designer/src/SceneSerializer.h

src/plugins/workflow_designer/src/SchemaAliasesConfigurationDialogImpl.cpp

src/plugins/workflow_designer/src/SchemaAliasesConfigurationDialogImpl.h

src/plugins/workflow_designer/src/SchemaConfigurationDialog.cpp

src/plugins/workflow_designer/src/SchemaConfigurationDialog.h

src/plugins/workflow_designer/src/WorkflowDesignerPlugin.cpp

src/plugins/workflow_designer/src/WorkflowDesignerPlugin.h

src/plugins/workflow_designer/src/WorkflowDocument.cpp

src/plugins/workflow_designer/src/WorkflowDocument.h

src/plugins/workflow_designer/src/WorkflowEditor.cpp

src/plugins/workflow_designer/src/WorkflowEditor.h

src/plugins/workflow_designer/src/WorkflowEditorDelegates.cpp

src/plugins/workflow_designer/src/WorkflowEditorDelegates.h

src/plugins/workflow_designer/src/WorkflowIOTasks.cpp

src/plugins/workflow_designer/src/WorkflowIOTasks.h

src/plugins/workflow_designer/src/WorkflowMetaDialog.cpp

src/plugins/workflow_designer/src/WorkflowMetaDialog.h

src/plugins/workflow_designer/src/WorkflowPalette.cpp

src/plugins/workflow_designer/src/WorkflowPalette.h

src/plugins/workflow_designer/src/WorkflowRunTask.cpp

src/plugins/workflow_designer/src/WorkflowRunTask.h

src/plugins/workflow_designer/src/WorkflowSamples.cpp

src/plugins/workflow_designer/src/WorkflowSamples.h

src/plugins/workflow_designer/src/WorkflowSceneIOTasks.cpp

src/plugins/workflow_designer/src/WorkflowSceneIOTasks.h

src/plugins/workflow_designer/src/WorkflowSettingsController.cpp

src/plugins/workflow_designer/src/WorkflowSettingsController.h

src/plugins/workflow_designer/src/WorkflowViewController.cpp

src/plugins/workflow_designer/src/WorkflowViewController.h

src/plugins/workflow_designer/src/WorkflowViewItems.cpp

src/plugins/workflow_designer/src/WorkflowViewItems.h

src/plugins/workflow_designer/src/cmdline/

src/plugins/workflow_designer/src/cmdline/WorkflowCMDLineTasks.cpp

src/plugins/workflow_designer/src/cmdline/WorkflowCMDLineTasks.h

src/plugins/workflow_designer/src/library/BaseDocWorker.cpp

src/plugins/workflow_designer/src/library/BaseDocWorker.h

src/plugins/workflow_designer/src/library/CDSearchWorker.cpp

src/plugins/workflow_designer/src/library/CDSearchWorker.h

src/plugins/workflow_designer/src/library/CoreLib.cpp

src/plugins/workflow_designer/src/library/CoreLib.h

src/plugins/workflow_designer/src/library/CreateExternalProcessDialog.cpp

src/plugins/workflow_designer/src/library/CreateExternalProcessDialog.h

src/plugins/workflow_designer/src/library/DocActors.cpp

src/plugins/workflow_designer/src/library/DocActors.h

src/plugins/workflow_designer/src/library/DocWorkers.cpp

src/plugins/workflow_designer/src/library/DocWorkers.h

src/plugins/workflow_designer/src/library/ExternalProcessWorker.cpp

src/plugins/workflow_designer/src/library/ExternalProcessWorker.h

src/plugins/workflow_designer/src/library/FilterAnnotationsWorker.cpp

src/plugins/workflow_designer/src/library/FilterAnnotationsWorker.h

src/plugins/workflow_designer/src/library/FindWorker.cpp

src/plugins/workflow_designer/src/library/FindWorker.h

src/plugins/workflow_designer/src/library/GenericReadActor.cpp

src/plugins/workflow_designer/src/library/GenericReadActor.h

src/plugins/workflow_designer/src/library/GenericReadWorker.cpp

src/plugins/workflow_designer/src/library/GenericReadWorker.h

src/plugins/workflow_designer/src/library/ImportAnnotationsWorker.cpp

src/plugins/workflow_designer/src/library/ImportAnnotationsWorker.h

src/plugins/workflow_designer/src/library/MSA2SequenceWorker.cpp

src/plugins/workflow_designer/src/library/MSA2SequenceWorker.h

src/plugins/workflow_designer/src/library/RemoteDBFetcherWorker.cpp

src/plugins/workflow_designer/src/library/RemoteDBFetcherWorker.h

src/plugins/workflow_designer/src/library/ReverseComplementWorker.cpp

src/plugins/workflow_designer/src/library/ReverseComplementWorker.h

src/plugins/workflow_designer/src/library/ScriptWorker.cpp

src/plugins/workflow_designer/src/library/ScriptWorker.h

src/plugins/workflow_designer/src/library/SequenceSplitWorker.cpp

src/plugins/workflow_designer/src/library/SequenceSplitWorker.h

src/plugins/workflow_designer/src/library/SequencesToMSAWorker.cpp

src/plugins/workflow_designer/src/library/SequencesToMSAWorker.h

src/plugins/workflow_designer/src/library/StatisticWorkers.cpp

src/plugins/workflow_designer/src/library/StatisticWorkers.h

src/plugins/workflow_designer/src/library/Text2SequenceWorker.cpp

src/plugins/workflow_designer/src/library/Text2SequenceWorker.h

src/plugins/workflow_designer/src/ui/ChooseItemDialog.ui

src/plugins/workflow_designer/src/ui/CreateScriptBlockDialog.ui

src/plugins/workflow_designer/src/ui/ExternalProcessWorkerDialog.ui

src/plugins/workflow_designer/src/ui/SchemaAliasesConfigurationDialog.ui

src/plugins/workflow_designer/src/ui/WorkflowEditorWidget.ui

src/plugins/workflow_designer/src/ui/WorkflowSettingsWidget.ui

src/plugins/workflow_designer/src/util/

src/plugins/workflow_designer/src/util/SaveSchemaImageUtils.cpp

src/plugins/workflow_designer/src/util/SaveSchemaImageUtils.h

src/plugins/workflow_designer/transl/english.ts

src/plugins/workflow_designer/transl/russian.ts

src/plugins/workflow_designer/workflow_designer.pri

src/plugins/workflow_designer/workflow_designer.pro

src/plugins/workflow_designer/workflow_designer.qrc

src/plugins/workflow_dump/

src/plugins/workflow_dump/src/

src/plugins/workflow_dump/src/WorkflowDumpPlugin.cpp

src/plugins/workflow_dump/src/WorkflowDumpPlugin.h

src/plugins/workflow_dump/workflow_dump.pri

src/plugins/workflow_dump/workflow_dump.pro

src/plugins_3rdparty/ball/

src/plugins_3rdparty/ball/ball.pri

src/plugins_3rdparty/ball/ball.pro

src/plugins_3rdparty/ball/src/

src/plugins_3rdparty/ball/src/BallPlugin.cpp

src/plugins_3rdparty/ball/src/BallPlugin.h

src/plugins_3rdparty/ball/src/SAS.cpp

src/plugins_3rdparty/ball/src/SAS.h

src/plugins_3rdparty/ball/src/SES.cpp

src/plugins_3rdparty/ball/src/SES.h

src/plugins_3rdparty/ball/src/include/

src/plugins_3rdparty/ball/src/include/BALL/

src/plugins_3rdparty/ball/src/include/BALL/COMMON/

src/plugins_3rdparty/ball/src/include/BALL/COMMON/constants.h

src/plugins_3rdparty/ball/src/include/BALL/COMMON/create.h

src/plugins_3rdparty/ball/src/include/BALL/COMMON/debug.h

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src/plugins_3rdparty/ball/src/include/BALL/COMMON/global.h

src/plugins_3rdparty/ball/src/include/BALL/COMMON/hash.h

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src/plugins_3rdparty/ball/src/include/BALL/COMMON/logStream.h

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src/plugins_3rdparty/ball/src/include/BALL/COMMON/macros.h

src/plugins_3rdparty/ball/src/include/BALL/COMMON/rtti.h

src/plugins_3rdparty/ball/src/include/BALL/COMMON/version.h

src/plugins_3rdparty/ball/src/include/BALL/CONCEPT/

src/plugins_3rdparty/ball/src/include/BALL/CONCEPT/baseFunctor.h

src/plugins_3rdparty/ball/src/include/BALL/CONCEPT/baseIterator.h

src/plugins_3rdparty/ball/src/include/BALL/CONCEPT/forwardIterator.h

src/plugins_3rdparty/ball/src/include/BALL/CONCEPT/predicate.h

src/plugins_3rdparty/ball/src/include/BALL/CONCEPT/processor.h

src/plugins_3rdparty/ball/src/include/BALL/CONCEPT/visitor.h

src/plugins_3rdparty/ball/src/include/BALL/CONFIG/

src/plugins_3rdparty/ball/src/include/BALL/CONFIG/config.h

src/plugins_3rdparty/ball/src/include/BALL/DATATYPE/

src/plugins_3rdparty/ball/src/include/BALL/DATATYPE/forEach.h

src/plugins_3rdparty/ball/src/include/BALL/DATATYPE/hashGrid.h

src/plugins_3rdparty/ball/src/include/BALL/DATATYPE/hashMap.h

src/plugins_3rdparty/ball/src/include/BALL/DATATYPE/hashSet.h

src/plugins_3rdparty/ball/src/include/BALL/DATATYPE/list.h

src/plugins_3rdparty/ball/src/include/BALL/DATATYPE/quadruple.h

src/plugins_3rdparty/ball/src/include/BALL/DATATYPE/string.h

src/plugins_3rdparty/ball/src/include/BALL/DATATYPE/string.iC

src/plugins_3rdparty/ball/src/include/BALL/DATATYPE/stringHashMap.h

src/plugins_3rdparty/ball/src/include/BALL/DATATYPE/triple.h

src/plugins_3rdparty/ball/src/include/BALL/MATHS/

src/plugins_3rdparty/ball/src/include/BALL/MATHS/analyticalGeometry.h

src/plugins_3rdparty/ball/src/include/BALL/MATHS/angle.h

src/plugins_3rdparty/ball/src/include/BALL/MATHS/circle3.h

src/plugins_3rdparty/ball/src/include/BALL/MATHS/common.h

src/plugins_3rdparty/ball/src/include/BALL/MATHS/line3.h

src/plugins_3rdparty/ball/src/include/BALL/MATHS/matrix44.h

src/plugins_3rdparty/ball/src/include/BALL/MATHS/plane3.h

src/plugins_3rdparty/ball/src/include/BALL/MATHS/quaternion.h

src/plugins_3rdparty/ball/src/include/BALL/MATHS/simpleBox3.h

src/plugins_3rdparty/ball/src/include/BALL/MATHS/sphere3.h

src/plugins_3rdparty/ball/src/include/BALL/MATHS/surface.h

src/plugins_3rdparty/ball/src/include/BALL/MATHS/vector3.h

src/plugins_3rdparty/ball/src/include/BALL/MATHS/vector4.h

src/plugins_3rdparty/ball/src/include/BALL/STRUCTURE/

src/plugins_3rdparty/ball/src/include/BALL/STRUCTURE/RSEdge.h

src/plugins_3rdparty/ball/src/include/BALL/STRUCTURE/RSFace.h

src/plugins_3rdparty/ball/src/include/BALL/STRUCTURE/RSVertex.h

src/plugins_3rdparty/ball/src/include/BALL/STRUCTURE/SASEdge.h

src/plugins_3rdparty/ball/src/include/BALL/STRUCTURE/SASFace.h

src/plugins_3rdparty/ball/src/include/BALL/STRUCTURE/SASVertex.h

src/plugins_3rdparty/ball/src/include/BALL/STRUCTURE/SESEdge.h

src/plugins_3rdparty/ball/src/include/BALL/STRUCTURE/SESFace.h

src/plugins_3rdparty/ball/src/include/BALL/STRUCTURE/SESVertex.h

src/plugins_3rdparty/ball/src/include/BALL/STRUCTURE/graphEdge.h

src/plugins_3rdparty/ball/src/include/BALL/STRUCTURE/graphFace.h

src/plugins_3rdparty/ball/src/include/BALL/STRUCTURE/graphVertex.h

src/plugins_3rdparty/ball/src/include/BALL/STRUCTURE/reducedSurface.h

src/plugins_3rdparty/ball/src/include/BALL/STRUCTURE/solventAccessibleSurface.h

src/plugins_3rdparty/ball/src/include/BALL/STRUCTURE/solventExcludedSurface.h

src/plugins_3rdparty/ball/src/include/BALL/STRUCTURE/triangle.h

src/plugins_3rdparty/ball/src/include/BALL/STRUCTURE/triangleEdge.h

src/plugins_3rdparty/ball/src/include/BALL/STRUCTURE/trianglePoint.h

src/plugins_3rdparty/ball/src/include/BALL/STRUCTURE/triangulatedSAS.h

src/plugins_3rdparty/ball/src/include/BALL/STRUCTURE/triangulatedSES.h

src/plugins_3rdparty/ball/src/include/BALL/STRUCTURE/triangulatedSurface.h

src/plugins_3rdparty/ball/src/include/BALL/common.h

src/plugins_3rdparty/ball/src/source/

src/plugins_3rdparty/ball/src/source/COMMON/

src/plugins_3rdparty/ball/src/source/COMMON/constants.cpp

src/plugins_3rdparty/ball/src/source/COMMON/exception.cpp

src/plugins_3rdparty/ball/src/source/COMMON/hash.cpp

src/plugins_3rdparty/ball/src/source/COMMON/logStream.cpp

src/plugins_3rdparty/ball/src/source/COMMON/rtti.cpp

src/plugins_3rdparty/ball/src/source/COMMON/version.cpp

src/plugins_3rdparty/ball/src/source/CONCEPT/

src/plugins_3rdparty/ball/src/source/CONCEPT/predicate.cpp

src/plugins_3rdparty/ball/src/source/CONCEPT/processor.cpp

src/plugins_3rdparty/ball/src/source/CONCEPT/visitor.cpp

src/plugins_3rdparty/ball/src/source/DATATYPE/

src/plugins_3rdparty/ball/src/source/DATATYPE/hashGrid.cpp

src/plugins_3rdparty/ball/src/source/DATATYPE/string.cpp

src/plugins_3rdparty/ball/src/source/MATHS/

src/plugins_3rdparty/ball/src/source/MATHS/analyticalGeometry.cpp

src/plugins_3rdparty/ball/src/source/MATHS/angle.cpp

src/plugins_3rdparty/ball/src/source/MATHS/circle3.cpp

src/plugins_3rdparty/ball/src/source/MATHS/common.cpp

src/plugins_3rdparty/ball/src/source/MATHS/line3.cpp

src/plugins_3rdparty/ball/src/source/MATHS/matrix44.cpp

src/plugins_3rdparty/ball/src/source/MATHS/plane3.cpp

src/plugins_3rdparty/ball/src/source/MATHS/quaternion.cpp

src/plugins_3rdparty/ball/src/source/MATHS/simpleBox3.cpp

src/plugins_3rdparty/ball/src/source/MATHS/sphere3.cpp

src/plugins_3rdparty/ball/src/source/MATHS/surface.cpp

src/plugins_3rdparty/ball/src/source/MATHS/vector3.cpp

src/plugins_3rdparty/ball/src/source/MATHS/vector4.cpp

src/plugins_3rdparty/ball/src/source/STRUCTURE/

src/plugins_3rdparty/ball/src/source/STRUCTURE/RSEdge.cpp

src/plugins_3rdparty/ball/src/source/STRUCTURE/RSFace.cpp

src/plugins_3rdparty/ball/src/source/STRUCTURE/RSVertex.cpp

src/plugins_3rdparty/ball/src/source/STRUCTURE/SASEdge.cpp

src/plugins_3rdparty/ball/src/source/STRUCTURE/SASFace.cpp

src/plugins_3rdparty/ball/src/source/STRUCTURE/SASVertex.cpp

src/plugins_3rdparty/ball/src/source/STRUCTURE/SESEdge.cpp

src/plugins_3rdparty/ball/src/source/STRUCTURE/SESFace.cpp

src/plugins_3rdparty/ball/src/source/STRUCTURE/SESVertex.cpp

src/plugins_3rdparty/ball/src/source/STRUCTURE/graphEdge.cpp

src/plugins_3rdparty/ball/src/source/STRUCTURE/graphFace.cpp

src/plugins_3rdparty/ball/src/source/STRUCTURE/graphVertex.cpp

src/plugins_3rdparty/ball/src/source/STRUCTURE/reducedSurface.cpp

src/plugins_3rdparty/ball/src/source/STRUCTURE/solventAccessibleSurface.cpp

src/plugins_3rdparty/ball/src/source/STRUCTURE/solventExcludedSurface.cpp

src/plugins_3rdparty/ball/src/source/STRUCTURE/triangle.cpp

src/plugins_3rdparty/ball/src/source/STRUCTURE/triangleEdge.cpp

src/plugins_3rdparty/ball/src/source/STRUCTURE/trianglePoint.cpp

src/plugins_3rdparty/ball/src/source/STRUCTURE/triangulatedSAS.cpp

src/plugins_3rdparty/ball/src/source/STRUCTURE/triangulatedSES.cpp

src/plugins_3rdparty/ball/src/source/STRUCTURE/triangulatedSurface.cpp

src/plugins_3rdparty/ball/transl/

src/plugins_3rdparty/ball/transl/czech.ts

src/plugins_3rdparty/ball/transl/english.ts

src/plugins_3rdparty/ball/transl/russian.ts

src/plugins_3rdparty/bowtie/

src/plugins_3rdparty/bowtie/bowtie.pri

src/plugins_3rdparty/bowtie/bowtie.pro

src/plugins_3rdparty/bowtie/src/

src/plugins_3rdparty/bowtie/src/BowtieAdapter.cpp

src/plugins_3rdparty/bowtie/src/BowtieAdapter.h

src/plugins_3rdparty/bowtie/src/BowtieConstants.h

src/plugins_3rdparty/bowtie/src/BowtieContext.cpp

src/plugins_3rdparty/bowtie/src/BowtieContext.h

src/plugins_3rdparty/bowtie/src/BowtieIOAdapter.cpp

src/plugins_3rdparty/bowtie/src/BowtieIOAdapter.h

src/plugins_3rdparty/bowtie/src/BowtiePlugin.cpp

src/plugins_3rdparty/bowtie/src/BowtiePlugin.h

src/plugins_3rdparty/bowtie/src/BowtieReadsIOUtils.h

src/plugins_3rdparty/bowtie/src/BowtieSettingsWidget.cpp

src/plugins_3rdparty/bowtie/src/BowtieSettingsWidget.h

src/plugins_3rdparty/bowtie/src/BowtieTask.cpp

src/plugins_3rdparty/bowtie/src/BowtieTask.h

src/plugins_3rdparty/bowtie/src/BowtieWorker.cpp

src/plugins_3rdparty/bowtie/src/BowtieWorker.h

src/plugins_3rdparty/bowtie/src/bowtie/

src/plugins_3rdparty/bowtie/src/bowtie/COPYING

src/plugins_3rdparty/bowtie/src/bowtie/SeqAn-1.1/

src/plugins_3rdparty/bowtie/src/bowtie/SeqAn-1.1/README.txt

src/plugins_3rdparty/bowtie/src/bowtie/SeqAn-1.1/platform_linux_gcc.h

src/plugins_3rdparty/bowtie/src/bowtie/SeqAn-1.1/platform_windows_mingw.h

src/plugins_3rdparty/bowtie/src/bowtie/SeqAn-1.1/platform_windows_vs.h

src/plugins_3rdparty/bowtie/src/bowtie/SeqAn-1.1/seqan/

src/plugins_3rdparty/bowtie/src/bowtie/SeqAn-1.1/seqan/basic.h

src/plugins_3rdparty/bowtie/src/bowtie/SeqAn-1.1/seqan/basic/

src/plugins_3rdparty/bowtie/src/bowtie/SeqAn-1.1/seqan/basic/basic_aggregates.h

src/plugins_3rdparty/bowtie/src/bowtie/SeqAn-1.1/seqan/basic/basic_allocator_interface.h

src/plugins_3rdparty/bowtie/src/bowtie/SeqAn-1.1/seqan/basic/basic_allocator_multipool.h

src/plugins_3rdparty/bowtie/src/bowtie/SeqAn-1.1/seqan/basic/basic_allocator_simple.h

src/plugins_3rdparty/bowtie/src/bowtie/SeqAn-1.1/seqan/basic/basic_allocator_singlepool.h

src/plugins_3rdparty/bowtie/src/bowtie/SeqAn-1.1/seqan/basic/basic_allocator_to_std.h

src/plugins_3rdparty/bowtie/src/bowtie/SeqAn-1.1/seqan/basic/basic_alphabet_interface.h

src/plugins_3rdparty/bowtie/src/bowtie/SeqAn-1.1/seqan/basic/basic_alphabet_interface2.h

src/plugins_3rdparty/bowtie/src/bowtie/SeqAn-1.1/seqan/basic/basic_alphabet_simple.h

src/plugins_3rdparty/bowtie/src/bowtie/SeqAn-1.1/seqan/basic/basic_alphabet_simple_tabs.h

src/plugins_3rdparty/bowtie/src/bowtie/SeqAn-1.1/seqan/basic/basic_alphabet_trait_basic.h

src/plugins_3rdparty/bowtie/src/bowtie/SeqAn-1.1/seqan/basic/basic_compare.h

src/plugins_3rdparty/bowtie/src/bowtie/SeqAn-1.1/seqan/basic/basic_converter.h

src/plugins_3rdparty/bowtie/src/bowtie/SeqAn-1.1/seqan/basic/basic_counted_ptr.h

src/plugins_3rdparty/bowtie/src/bowtie/SeqAn-1.1/seqan/basic/basic_debug.h

src/plugins_3rdparty/bowtie/src/bowtie/SeqAn-1.1/seqan/basic/basic_definition.h

src/plugins_3rdparty/bowtie/src/bowtie/SeqAn-1.1/seqan/basic/basic_forwards.h

src/plugins_3rdparty/bowtie/src/bowtie/SeqAn-1.1/seqan/basic/basic_generated_forwards.h

src/plugins_3rdparty/bowtie/src/bowtie/SeqAn-1.1/seqan/basic/basic_holder.h

src/plugins_3rdparty/bowtie/src/bowtie/SeqAn-1.1/seqan/basic/basic_host.h

src/plugins_3rdparty/bowtie/src/bowtie/SeqAn-1.1/seqan/basic/basic_iterator.h

src/plugins_3rdparty/bowtie/src/bowtie/SeqAn-1.1/seqan/basic/basic_iterator_adapt_std.h

src/plugins_3rdparty/bowtie/src/bowtie/SeqAn-1.1/seqan/basic/basic_iterator_adaptor.h

src/plugins_3rdparty/bowtie/src/bowtie/SeqAn-1.1/seqan/basic/basic_iterator_base.h

src/plugins_3rdparty/bowtie/src/bowtie/SeqAn-1.1/seqan/basic/basic_iterator_position.h

src/plugins_3rdparty/bowtie/src/bowtie/SeqAn-1.1/seqan/basic/basic_iterator_simple.h

src/plugins_3rdparty/bowtie/src/bowtie/SeqAn-1.1/seqan/basic/basic_metaprogramming.h

src/plugins_3rdparty/bowtie/src/bowtie/SeqAn-1.1/seqan/basic/basic_operator.h

src/plugins_3rdparty/bowtie/src/bowtie/SeqAn-1.1/seqan/basic/basic_pointer.h

src/plugins_3rdparty/bowtie/src/bowtie/SeqAn-1.1/seqan/basic/basic_profile.h

src/plugins_3rdparty/bowtie/src/bowtie/SeqAn-1.1/seqan/basic/basic_proxy.h

src/plugins_3rdparty/bowtie/src/bowtie/SeqAn-1.1/seqan/basic/basic_tag.h

src/plugins_3rdparty/bowtie/src/bowtie/SeqAn-1.1/seqan/basic/basic_transport.h

src/plugins_3rdparty/bowtie/src/bowtie/SeqAn-1.1/seqan/basic/basic_type.h

src/plugins_3rdparty/bowtie/src/bowtie/SeqAn-1.1/seqan/basic/basic_volatile_ptr.h

src/plugins_3rdparty/bowtie/src/bowtie/SeqAn-1.1/seqan/file.h

src/plugins_3rdparty/bowtie/src/bowtie/SeqAn-1.1/seqan/file/

src/plugins_3rdparty/bowtie/src/bowtie/SeqAn-1.1/seqan/file/chunk_collector.h

src/plugins_3rdparty/bowtie/src/bowtie/SeqAn-1.1/seqan/file/cstream.h

src/plugins_3rdparty/bowtie/src/bowtie/SeqAn-1.1/seqan/file/file_array.h

src/plugins_3rdparty/bowtie/src/bowtie/SeqAn-1.1/seqan/file/file_base.h

src/plugins_3rdparty/bowtie/src/bowtie/SeqAn-1.1/seqan/file/file_format.h

src/plugins_3rdparty/bowtie/src/bowtie/SeqAn-1.1/seqan/file/file_format_cgviz.h

src/plugins_3rdparty/bowtie/src/bowtie/SeqAn-1.1/seqan/file/file_format_fasta.h

src/plugins_3rdparty/bowtie/src/bowtie/SeqAn-1.1/seqan/file/file_format_fasta_align.h

src/plugins_3rdparty/bowtie/src/bowtie/SeqAn-1.1/seqan/file/file_format_guess.h

src/plugins_3rdparty/bowtie/src/bowtie/SeqAn-1.1/seqan/file/file_format_raw.h

src/plugins_3rdparty/bowtie/src/bowtie/SeqAn-1.1/seqan/file/file_forwards.h

src/plugins_3rdparty/bowtie/src/bowtie/SeqAn-1.1/seqan/file/file_generated_forwards.h

src/plugins_3rdparty/bowtie/src/bowtie/SeqAn-1.1/seqan/file/meta.h

src/plugins_3rdparty/bowtie/src/bowtie/SeqAn-1.1/seqan/file/stream.h

src/plugins_3rdparty/bowtie/src/bowtie/SeqAn-1.1/seqan/file/stream_algorithms.h

src/plugins_3rdparty/bowtie/src/bowtie/SeqAn-1.1/seqan/find.h

src/plugins_3rdparty/bowtie/src/bowtie/SeqAn-1.1/seqan/find/

src/plugins_3rdparty/bowtie/src/bowtie/SeqAn-1.1/seqan/find/find_base.h

src/plugins_3rdparty/bowtie/src/bowtie/SeqAn-1.1/seqan/find/find_generated_forwards.h

src/plugins_3rdparty/bowtie/src/bowtie/SeqAn-1.1/seqan/find/find_horspool.h

src/plugins_3rdparty/bowtie/src/bowtie/SeqAn-1.1/seqan/find/find_multi.h

src/plugins_3rdparty/bowtie/src/bowtie/SeqAn-1.1/seqan/find/find_multiple_shiftand.h

src/plugins_3rdparty/bowtie/src/bowtie/SeqAn-1.1/seqan/find/find_score.h

src/plugins_3rdparty/bowtie/src/bowtie/SeqAn-1.1/seqan/find/find_set_horspool.h

src/plugins_3rdparty/bowtie/src/bowtie/SeqAn-1.1/seqan/index.h

src/plugins_3rdparty/bowtie/src/bowtie/SeqAn-1.1/seqan/index/

src/plugins_3rdparty/bowtie/src/bowtie/SeqAn-1.1/seqan/index/index_base.h

src/plugins_3rdparty/bowtie/src/bowtie/SeqAn-1.1/seqan/index/index_find.h

src/plugins_3rdparty/bowtie/src/bowtie/SeqAn-1.1/seqan/index/index_generated_forwards.h

src/plugins_3rdparty/bowtie/src/bowtie/SeqAn-1.1/seqan/index/index_manual_forwards.h

src/plugins_3rdparty/bowtie/src/bowtie/SeqAn-1.1/seqan/index/index_qgram_find.h

src/plugins_3rdparty/bowtie/src/bowtie/SeqAn-1.1/seqan/index/index_sa_lss.h

src/plugins_3rdparty/bowtie/src/bowtie/SeqAn-1.1/seqan/index/shape_base.h

src/plugins_3rdparty/bowtie/src/bowtie/SeqAn-1.1/seqan/index/shape_gapped.h

src/plugins_3rdparty/bowtie/src/bowtie/SeqAn-1.1/seqan/index/shape_predefined.h

src/plugins_3rdparty/bowtie/src/bowtie/SeqAn-1.1/seqan/platform.h

src/plugins_3rdparty/bowtie/src/bowtie/SeqAn-1.1/seqan/sequence.h

src/plugins_3rdparty/bowtie/src/bowtie/SeqAn-1.1/seqan/sequence/

src/plugins_3rdparty/bowtie/src/bowtie/SeqAn-1.1/seqan/sequence/lexical.h

src/plugins_3rdparty/bowtie/src/bowtie/SeqAn-1.1/seqan/sequence/segment_base.h

src/plugins_3rdparty/bowtie/src/bowtie/SeqAn-1.1/seqan/sequence/segment_infix.h

src/plugins_3rdparty/bowtie/src/bowtie/SeqAn-1.1/seqan/sequence/segment_prefix.h

src/plugins_3rdparty/bowtie/src/bowtie/SeqAn-1.1/seqan/sequence/segment_suffix.h

src/plugins_3rdparty/bowtie/src/bowtie/SeqAn-1.1/seqan/sequence/sequence_forwards.h

src/plugins_3rdparty/bowtie/src/bowtie/SeqAn-1.1/seqan/sequence/sequence_generated_forwards.h

src/plugins_3rdparty/bowtie/src/bowtie/SeqAn-1.1/seqan/sequence/sequence_interface.h

src/plugins_3rdparty/bowtie/src/bowtie/SeqAn-1.1/seqan/sequence/sequence_multiple.h

src/plugins_3rdparty/bowtie/src/bowtie/SeqAn-1.1/seqan/sequence/sequence_shortcuts.h

src/plugins_3rdparty/bowtie/src/bowtie/SeqAn-1.1/seqan/sequence/std_string.h

src/plugins_3rdparty/bowtie/src/bowtie/SeqAn-1.1/seqan/sequence/string_alloc.h

src/plugins_3rdparty/bowtie/src/bowtie/SeqAn-1.1/seqan/sequence/string_array.h

src/plugins_3rdparty/bowtie/src/bowtie/SeqAn-1.1/seqan/sequence/string_base.h

src/plugins_3rdparty/bowtie/src/bowtie/SeqAn-1.1/seqan/sequence/string_cstyle.h

src/plugins_3rdparty/bowtie/src/bowtie/SeqAn-1.1/seqan/sequence/string_packed.h

src/plugins_3rdparty/bowtie/src/bowtie/SeqAn-1.1/seqan/sequence/string_pointer.h

src/plugins_3rdparty/bowtie/src/bowtie/SeqAn-1.1/seqan/sequence/string_stack.h

src/plugins_3rdparty/bowtie/src/bowtie/SeqAn-1.1/seqan/sequence/string_value_expand.h

src/plugins_3rdparty/bowtie/src/bowtie/aligner.h

src/plugins_3rdparty/bowtie/src/bowtie/aligner_0mm.h

src/plugins_3rdparty/bowtie/src/bowtie/aligner_1mm.h

src/plugins_3rdparty/bowtie/src/bowtie/aligner_23mm.h

src/plugins_3rdparty/bowtie/src/bowtie/aligner_metrics.h

src/plugins_3rdparty/bowtie/src/bowtie/aligner_seed_mm.h

src/plugins_3rdparty/bowtie/src/bowtie/alphabet.cpp

src/plugins_3rdparty/bowtie/src/bowtie/alphabet.h

src/plugins_3rdparty/bowtie/src/bowtie/annot.cpp

src/plugins_3rdparty/bowtie/src/bowtie/annot.h

src/plugins_3rdparty/bowtie/src/bowtie/assert_helpers.h

src/plugins_3rdparty/bowtie/src/bowtie/auto_array.h

src/plugins_3rdparty/bowtie/src/bowtie/binary_sa_search.h

src/plugins_3rdparty/bowtie/src/bowtie/bitpack.h

src/plugins_3rdparty/bowtie/src/bowtie/bitset.h

src/plugins_3rdparty/bowtie/src/bowtie/blockwise_sa.cpp

src/plugins_3rdparty/bowtie/src/bowtie/blockwise_sa.h

src/plugins_3rdparty/bowtie/src/bowtie/bowtie_build_main.cpp

src/plugins_3rdparty/bowtie/src/bowtie/bowtie_inspect.cpp

src/plugins_3rdparty/bowtie/src/bowtie/bowtie_main.cpp

src/plugins_3rdparty/bowtie/src/bowtie/ccnt_lut.cpp

src/plugins_3rdparty/bowtie/src/bowtie/chaincat.cpp

src/plugins_3rdparty/bowtie/src/bowtie/color.cpp

src/plugins_3rdparty/bowtie/src/bowtie/color.h

src/plugins_3rdparty/bowtie/src/bowtie/color_dec.cpp

src/plugins_3rdparty/bowtie/src/bowtie/color_dec.h

src/plugins_3rdparty/bowtie/src/bowtie/diff_sample.h

src/plugins_3rdparty/bowtie/src/bowtie/ebwt.cpp

src/plugins_3rdparty/bowtie/src/bowtie/ebwt.h

src/plugins_3rdparty/bowtie/src/bowtie/ebwt_build.cpp

src/plugins_3rdparty/bowtie/src/bowtie/ebwt_search.cpp

src/plugins_3rdparty/bowtie/src/bowtie/ebwt_search_backtrack.h

src/plugins_3rdparty/bowtie/src/bowtie/ebwt_search_util.cpp

src/plugins_3rdparty/bowtie/src/bowtie/ebwt_search_util.h

src/plugins_3rdparty/bowtie/src/bowtie/edit.cpp

src/plugins_3rdparty/bowtie/src/bowtie/edit.h

src/plugins_3rdparty/bowtie/src/bowtie/endian_swap.h

src/plugins_3rdparty/bowtie/src/bowtie/filebuf.h

src/plugins_3rdparty/bowtie/src/bowtie/formats.h

src/plugins_3rdparty/bowtie/src/bowtie/hit.cpp

src/plugins_3rdparty/bowtie/src/bowtie/hit.h

src/plugins_3rdparty/bowtie/src/bowtie/hit_set.cpp

src/plugins_3rdparty/bowtie/src/bowtie/hit_set.h

src/plugins_3rdparty/bowtie/src/bowtie/log.cpp

src/plugins_3rdparty/bowtie/src/bowtie/log.h

src/plugins_3rdparty/bowtie/src/bowtie/mm.h

src/plugins_3rdparty/bowtie/src/bowtie/multikey_qsort.h

src/plugins_3rdparty/bowtie/src/bowtie/pat.cpp

src/plugins_3rdparty/bowtie/src/bowtie/pat.h

src/plugins_3rdparty/bowtie/src/bowtie/pool.h

src/plugins_3rdparty/bowtie/src/bowtie/qual.cpp

src/plugins_3rdparty/bowtie/src/bowtie/qual.h

src/plugins_3rdparty/bowtie/src/bowtie/random_source.h

src/plugins_3rdparty/bowtie/src/bowtie/random_test.cpp

src/plugins_3rdparty/bowtie/src/bowtie/range.h

src/plugins_3rdparty/bowtie/src/bowtie/range_cache.h

src/plugins_3rdparty/bowtie/src/bowtie/range_chaser.h

src/plugins_3rdparty/bowtie/src/bowtie/range_source.h

src/plugins_3rdparty/bowtie/src/bowtie/ref_aligner.cpp

src/plugins_3rdparty/bowtie/src/bowtie/ref_aligner.h

src/plugins_3rdparty/bowtie/src/bowtie/ref_read.cpp

src/plugins_3rdparty/bowtie/src/bowtie/ref_read.h

src/plugins_3rdparty/bowtie/src/bowtie/reference.h

src/plugins_3rdparty/bowtie/src/bowtie/refmap.cpp

src/plugins_3rdparty/bowtie/src/bowtie/refmap.h

src/plugins_3rdparty/bowtie/src/bowtie/row_chaser.h

src/plugins_3rdparty/bowtie/src/bowtie/sam.cpp

src/plugins_3rdparty/bowtie/src/bowtie/sam.h

src/plugins_3rdparty/bowtie/src/bowtie/search_1mm_phase1.c

src/plugins_3rdparty/bowtie/src/bowtie/search_1mm_phase2.c

src/plugins_3rdparty/bowtie/src/bowtie/search_23mm_phase1.c

src/plugins_3rdparty/bowtie/src/bowtie/search_23mm_phase2.c

src/plugins_3rdparty/bowtie/src/bowtie/search_23mm_phase3.c

src/plugins_3rdparty/bowtie/src/bowtie/search_exact.c

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src/plugins_3rdparty/kalign/src/kalign2/kalign2_dp.c

src/plugins_3rdparty/kalign/src/kalign2/kalign2_feature.c

src/plugins_3rdparty/kalign/src/kalign2/kalign2_feature.h

src/plugins_3rdparty/kalign/src/kalign2/kalign2_hirschberg.c

src/plugins_3rdparty/kalign/src/kalign2/kalign2_hirschberg.h

src/plugins_3rdparty/kalign/src/kalign2/kalign2_hirschberg_dna.c

src/plugins_3rdparty/kalign/src/kalign2/kalign2_hirschberg_dna.h

src/plugins_3rdparty/kalign/src/kalign2/kalign2_hirschberg_large.c

src/plugins_3rdparty/kalign/src/kalign2/kalign2_hirschberg_large.h

src/plugins_3rdparty/kalign/src/kalign2/kalign2_inferface.c

src/plugins_3rdparty/kalign/src/kalign2/kalign2_input.c

src/plugins_3rdparty/kalign/src/kalign2/kalign2_input.h

src/plugins_3rdparty/kalign/src/kalign2/kalign2_main.c

src/plugins_3rdparty/kalign/src/kalign2/kalign2_mem.c

src/plugins_3rdparty/kalign/src/kalign2/kalign2_misc.c

src/plugins_3rdparty/kalign/src/kalign2/kalign2_output.c

src/plugins_3rdparty/kalign/src/kalign2/kalign2_output.h

src/plugins_3rdparty/kalign/src/kalign2/kalign2_profile.c

src/plugins_3rdparty/kalign/src/kalign2/kalign2_profile_alignment.c

src/plugins_3rdparty/kalign/src/kalign2/kalign2_profile_alignment.h

src/plugins_3rdparty/kalign/src/kalign2/kalign2_simple_gaps.c

src/plugins_3rdparty/kalign/src/kalign2/kalign2_string_matching.c

src/plugins_3rdparty/kalign/src/kalign2/kalign2_tree.c

src/plugins_3rdparty/kalign/src/kalign2/kalign2_upgma.c

src/plugins_3rdparty/kalign/src/kalign_tests/

src/plugins_3rdparty/kalign/src/kalign_tests/KalignTests.cpp

src/plugins_3rdparty/kalign/src/kalign_tests/KalignTests.h

src/plugins_3rdparty/kalign/src/ui/

src/plugins_3rdparty/kalign/src/ui/KalignDialog.ui

src/plugins_3rdparty/kalign/transl/

src/plugins_3rdparty/kalign/transl/english.ts

src/plugins_3rdparty/kalign/transl/russian.ts

src/plugins_3rdparty/phylip/

src/plugins_3rdparty/phylip/phylip.pri

src/plugins_3rdparty/phylip/phylip.pro

src/plugins_3rdparty/phylip/src/

src/plugins_3rdparty/phylip/src/DistMatrixModelWidget.cpp

src/plugins_3rdparty/phylip/src/DistMatrixModelWidget.h

src/plugins_3rdparty/phylip/src/DistanceMatrix.cpp

src/plugins_3rdparty/phylip/src/DistanceMatrix.h

src/plugins_3rdparty/phylip/src/NeighborJoinAdapter.cpp

src/plugins_3rdparty/phylip/src/NeighborJoinAdapter.h

src/plugins_3rdparty/phylip/src/PhylipPlugin.cpp

src/plugins_3rdparty/phylip/src/PhylipPlugin.h

src/plugins_3rdparty/phylip/src/PhylipPluginTests.cpp

src/plugins_3rdparty/phylip/src/PhylipPluginTests.h

src/plugins_3rdparty/phylip/src/SeqBootAdapter.cpp

src/plugins_3rdparty/phylip/src/SeqBootAdapter.h

src/plugins_3rdparty/phylip/src/SeqBootModelWidget.cpp

src/plugins_3rdparty/phylip/src/SeqBootModelWidget.h

src/plugins_3rdparty/phylip/src/cons.cpp

src/plugins_3rdparty/phylip/src/cons.h

src/plugins_3rdparty/phylip/src/dist.cpp

src/plugins_3rdparty/phylip/src/dist.h

src/plugins_3rdparty/phylip/src/dnadist.cpp

src/plugins_3rdparty/phylip/src/dnadist.h

src/plugins_3rdparty/phylip/src/neighbor.cpp

src/plugins_3rdparty/phylip/src/neighbor.h

src/plugins_3rdparty/phylip/src/phylip.cpp

src/plugins_3rdparty/phylip/src/phylip.h

src/plugins_3rdparty/phylip/src/protdist.cpp

src/plugins_3rdparty/phylip/src/protdist.h

src/plugins_3rdparty/phylip/src/seq.cpp

src/plugins_3rdparty/phylip/src/seq.h

src/plugins_3rdparty/phylip/src/seqboot.cpp

src/plugins_3rdparty/phylip/src/seqboot.h

src/plugins_3rdparty/phylip/src/ui/

src/plugins_3rdparty/phylip/src/ui/DistMatrixModel.ui

src/plugins_3rdparty/phylip/src/ui/SeqBootModel.ui

src/plugins_3rdparty/phylip/transl/

src/plugins_3rdparty/phylip/transl/english.ts

src/plugins_3rdparty/phylip/transl/russian.ts

src/plugins_3rdparty/primer3/

src/plugins_3rdparty/primer3/images/

src/plugins_3rdparty/primer3/images/primer3.png

src/plugins_3rdparty/primer3/primer3.pri

src/plugins_3rdparty/primer3/primer3.pro

src/plugins_3rdparty/primer3/primer3.qrc

src/plugins_3rdparty/primer3/src/

src/plugins_3rdparty/primer3/src/Primer3Dialog.cpp

src/plugins_3rdparty/primer3/src/Primer3Dialog.h

src/plugins_3rdparty/primer3/src/Primer3Plugin.cpp

src/plugins_3rdparty/primer3/src/Primer3Plugin.h

src/plugins_3rdparty/primer3/src/Primer3Query.cpp

src/plugins_3rdparty/primer3/src/Primer3Query.h

src/plugins_3rdparty/primer3/src/Primer3Task.cpp

src/plugins_3rdparty/primer3/src/Primer3Task.h

src/plugins_3rdparty/primer3/src/Primer3TaskSettings.cpp

src/plugins_3rdparty/primer3/src/Primer3TaskSettings.h

src/plugins_3rdparty/primer3/src/Primer3Tests.cpp

src/plugins_3rdparty/primer3/src/Primer3Tests.h

src/plugins_3rdparty/primer3/src/primer3_core/

src/plugins_3rdparty/primer3/src/primer3_core/boulder_input.c

src/plugins_3rdparty/primer3/src/primer3_core/boulder_input.h

src/plugins_3rdparty/primer3/src/primer3_core/dpal.c

src/plugins_3rdparty/primer3/src/primer3_core/dpal.h

src/plugins_3rdparty/primer3/src/primer3_core/oligotm.c

src/plugins_3rdparty/primer3/src/primer3_core/oligotm.h

src/plugins_3rdparty/primer3/src/primer3_core/primer3.c

src/plugins_3rdparty/primer3/src/primer3_core/primer3.h

src/plugins_3rdparty/primer3/src/primer3_core/primer3_main.c

src/plugins_3rdparty/primer3/src/primer3_core/primer3_main.h

src/plugins_3rdparty/primer3/src/ui/

src/plugins_3rdparty/primer3/src/ui/Primer3Dialog.ui

src/plugins_3rdparty/primer3/transl/

src/plugins_3rdparty/primer3/transl/czech.ts

src/plugins_3rdparty/primer3/transl/english.ts

src/plugins_3rdparty/primer3/transl/russian.ts

src/plugins_3rdparty/psipred/

src/plugins_3rdparty/psipred/datafiles/

src/plugins_3rdparty/psipred/datafiles/weights_p2.dat

src/plugins_3rdparty/psipred/datafiles/weights_s.dat

src/plugins_3rdparty/psipred/datafiles/weights_s.dat2

src/plugins_3rdparty/psipred/datafiles/weights_s.dat3

src/plugins_3rdparty/psipred/psipred.pri

src/plugins_3rdparty/psipred/psipred.pro

src/plugins_3rdparty/psipred/psipred.qrc

src/plugins_3rdparty/psipred/src/

src/plugins_3rdparty/psipred/src/LICENSE

src/plugins_3rdparty/psipred/src/PsipredAlgTask.cpp

src/plugins_3rdparty/psipred/src/PsipredAlgTask.h

src/plugins_3rdparty/psipred/src/PsipredPlugin.cpp

src/plugins_3rdparty/psipred/src/PsipredPlugin.h

src/plugins_3rdparty/psipred/src/seq2mtx.cpp

src/plugins_3rdparty/psipred/src/ssdefs.h

src/plugins_3rdparty/psipred/src/sspred_avpred.cpp

src/plugins_3rdparty/psipred/src/sspred_avpred.h

src/plugins_3rdparty/psipred/src/sspred_hmulti.cpp

src/plugins_3rdparty/psipred/src/sspred_hmulti.h

src/plugins_3rdparty/psipred/src/sspred_net.h

src/plugins_3rdparty/psipred/src/sspred_net2.h

src/plugins_3rdparty/psipred/src/sspred_utils.cpp

src/plugins_3rdparty/psipred/src/sspred_utils.h

src/plugins_3rdparty/psipred/transl/

src/plugins_3rdparty/psipred/transl/czech.ts

src/plugins_3rdparty/psipred/transl/english.ts

src/plugins_3rdparty/psipred/transl/russian.ts

src/plugins_3rdparty/ptools/

src/plugins_3rdparty/ptools/ptools.pri

src/plugins_3rdparty/ptools/ptools.pro

src/plugins_3rdparty/ptools/src/

src/plugins_3rdparty/ptools/src/PToolsAligner.cpp

src/plugins_3rdparty/ptools/src/PToolsAligner.h

src/plugins_3rdparty/ptools/src/PToolsPlugin.cpp

src/plugins_3rdparty/ptools/src/PToolsPlugin.h

src/plugins_3rdparty/ptools/src/PToolsTests.cpp

src/plugins_3rdparty/ptools/src/PToolsTests.h

src/plugins_3rdparty/ptools/src/ptools/

src/plugins_3rdparty/ptools/src/ptools/atom.cpp

src/plugins_3rdparty/ptools/src/ptools/atom.h

src/plugins_3rdparty/ptools/src/ptools/atomselection.cpp

src/plugins_3rdparty/ptools/src/ptools/atomselection.h

src/plugins_3rdparty/ptools/src/ptools/basetypes.cpp

src/plugins_3rdparty/ptools/src/ptools/basetypes.h

src/plugins_3rdparty/ptools/src/ptools/coord3d.cpp

src/plugins_3rdparty/ptools/src/ptools/coord3d.h

src/plugins_3rdparty/ptools/src/ptools/coordsarray.cpp

src/plugins_3rdparty/ptools/src/ptools/coordsarray.h

src/plugins_3rdparty/ptools/src/ptools/derivify.h

src/plugins_3rdparty/ptools/src/ptools/geometry.cpp

src/plugins_3rdparty/ptools/src/ptools/geometry.h

src/plugins_3rdparty/ptools/src/ptools/pdbio.cpp

src/plugins_3rdparty/ptools/src/ptools/pdbio.h

src/plugins_3rdparty/ptools/src/ptools/rigidbody.cpp

src/plugins_3rdparty/ptools/src/ptools/rigidbody.h

src/plugins_3rdparty/ptools/src/ptools/rmsd.cpp

src/plugins_3rdparty/ptools/src/ptools/rmsd.h

src/plugins_3rdparty/ptools/src/ptools/screw.h

src/plugins_3rdparty/ptools/src/ptools/superpose.cpp

src/plugins_3rdparty/ptools/src/ptools/superpose.h

src/plugins_3rdparty/sitecon/images/sitecon.png

src/plugins_3rdparty/sitecon/sitecon.pri

src/plugins_3rdparty/sitecon/sitecon.pro

src/plugins_3rdparty/sitecon/src/DIProperties.cpp

src/plugins_3rdparty/sitecon/src/DIProperties.h

src/plugins_3rdparty/sitecon/src/DIPropertiesSitecon.cpp

src/plugins_3rdparty/sitecon/src/DIPropertiesSitecon.h

src/plugins_3rdparty/sitecon/src/DIPropertiesTests.cpp

src/plugins_3rdparty/sitecon/src/DIPropertiesTests.h

src/plugins_3rdparty/sitecon/src/SiteconAlgorithm.cpp

src/plugins_3rdparty/sitecon/src/SiteconAlgorithm.h

src/plugins_3rdparty/sitecon/src/SiteconAlgorithmTests.cpp

src/plugins_3rdparty/sitecon/src/SiteconAlgorithmTests.h

src/plugins_3rdparty/sitecon/src/SiteconBuildDialogController.cpp

src/plugins_3rdparty/sitecon/src/SiteconBuildDialogController.h

src/plugins_3rdparty/sitecon/src/SiteconBuildWorker.cpp

src/plugins_3rdparty/sitecon/src/SiteconIO.cpp

src/plugins_3rdparty/sitecon/src/SiteconIO.h

src/plugins_3rdparty/sitecon/src/SiteconIOWorkers.cpp

src/plugins_3rdparty/sitecon/src/SiteconIOWorkers.h

src/plugins_3rdparty/sitecon/src/SiteconMath.cpp

src/plugins_3rdparty/sitecon/src/SiteconMath.h

src/plugins_3rdparty/sitecon/src/SiteconPlugin.cpp

src/plugins_3rdparty/sitecon/src/SiteconPlugin.h

src/plugins_3rdparty/sitecon/src/SiteconQuery.cpp

src/plugins_3rdparty/sitecon/src/SiteconQuery.h

src/plugins_3rdparty/sitecon/src/SiteconSearchDialogController.cpp

src/plugins_3rdparty/sitecon/src/SiteconSearchDialogController.h

src/plugins_3rdparty/sitecon/src/SiteconSearchTask.cpp

src/plugins_3rdparty/sitecon/src/SiteconSearchTask.h

src/plugins_3rdparty/sitecon/src/SiteconSearchWorker.cpp

src/plugins_3rdparty/sitecon/src/SiteconWorkers.h

src/plugins_3rdparty/sitecon/transl/czech.ts

src/plugins_3rdparty/sitecon/transl/english.ts

src/plugins_3rdparty/sitecon/transl/russian.ts

src/plugins_3rdparty/uhmmer/

src/plugins_3rdparty/uhmmer/hmmer.qrc

src/plugins_3rdparty/uhmmer/images/

src/plugins_3rdparty/uhmmer/images/hmmer_16.png

src/plugins_3rdparty/uhmmer/images/hmmer_32.png

src/plugins_3rdparty/uhmmer/images/hmmer_64.png

src/plugins_3rdparty/uhmmer/src/

src/plugins_3rdparty/uhmmer/src/HMMIO.cpp

src/plugins_3rdparty/uhmmer/src/HMMIO.h

src/plugins_3rdparty/uhmmer/src/HMMIOWorker.cpp

src/plugins_3rdparty/uhmmer/src/HMMIOWorker.h

src/plugins_3rdparty/uhmmer/src/TaskLocalStorage.cpp

src/plugins_3rdparty/uhmmer/src/TaskLocalStorage.h

src/plugins_3rdparty/uhmmer/src/hmmer2/

src/plugins_3rdparty/uhmmer/src/hmmer2/aligneval.cpp

src/plugins_3rdparty/uhmmer/src/hmmer2/alphabet.cpp

src/plugins_3rdparty/uhmmer/src/hmmer2/altivec_algorithms.cpp

src/plugins_3rdparty/uhmmer/src/hmmer2/checksum.cpp

src/plugins_3rdparty/uhmmer/src/hmmer2/cluster.cpp

src/plugins_3rdparty/uhmmer/src/hmmer2/config.h

src/plugins_3rdparty/uhmmer/src/hmmer2/core_algorithms.cpp

src/plugins_3rdparty/uhmmer/src/hmmer2/fast_algorithms.cpp

src/plugins_3rdparty/uhmmer/src/hmmer2/funcs.h

src/plugins_3rdparty/uhmmer/src/hmmer2/histogram.cpp

src/plugins_3rdparty/uhmmer/src/hmmer2/iupac.cpp

src/plugins_3rdparty/uhmmer/src/hmmer2/masks.cpp

src/plugins_3rdparty/uhmmer/src/hmmer2/mathsupport.cpp

src/plugins_3rdparty/uhmmer/src/hmmer2/modelmakers.cpp

src/plugins_3rdparty/uhmmer/src/hmmer2/msa.cpp

src/plugins_3rdparty/uhmmer/src/hmmer2/plan7.cpp

src/plugins_3rdparty/uhmmer/src/hmmer2/prior.cpp

src/plugins_3rdparty/uhmmer/src/hmmer2/sqerror.cpp

src/plugins_3rdparty/uhmmer/src/hmmer2/sre_math.cpp

src/plugins_3rdparty/uhmmer/src/hmmer2/sre_random.cpp

src/plugins_3rdparty/uhmmer/src/hmmer2/sre_string.cpp

src/plugins_3rdparty/uhmmer/src/hmmer2/structs.h

src/plugins_3rdparty/uhmmer/src/hmmer2/tophits.cpp

src/plugins_3rdparty/uhmmer/src/hmmer2/trace.cpp

src/plugins_3rdparty/uhmmer/src/hmmer2/vectorops.cpp

src/plugins_3rdparty/uhmmer/src/hmmer2/weight.cpp

src/plugins_3rdparty/uhmmer/src/uHMMPlugin.cpp

src/plugins_3rdparty/uhmmer/src/uHMMPlugin.h

src/plugins_3rdparty/uhmmer/src/u_build/

src/plugins_3rdparty/uhmmer/src/u_build/HMMBuildDialogController.cpp

src/plugins_3rdparty/uhmmer/src/u_build/HMMBuildDialogController.h

src/plugins_3rdparty/uhmmer/src/u_build/HMMBuildWorker.cpp

src/plugins_3rdparty/uhmmer/src/u_build/HMMBuildWorker.h

src/plugins_3rdparty/uhmmer/src/u_build/uhmmbuild.cpp

src/plugins_3rdparty/uhmmer/src/u_build/uhmmbuild.h

src/plugins_3rdparty/uhmmer/src/u_build/ui/

src/plugins_3rdparty/uhmmer/src/u_build/ui/HMMBuildDialog.ui

src/plugins_3rdparty/uhmmer/src/u_calibrate/

src/plugins_3rdparty/uhmmer/src/u_calibrate/HMMCalibrateDialogController.cpp

src/plugins_3rdparty/uhmmer/src/u_calibrate/HMMCalibrateDialogController.h

src/plugins_3rdparty/uhmmer/src/u_calibrate/uhmmcalibrate.cpp

src/plugins_3rdparty/uhmmer/src/u_calibrate/uhmmcalibrate.h

src/plugins_3rdparty/uhmmer/src/u_calibrate/ui/

src/plugins_3rdparty/uhmmer/src/u_calibrate/ui/HMMCalibrateDialog.ui

src/plugins_3rdparty/uhmmer/src/u_search/

src/plugins_3rdparty/uhmmer/src/u_search/HMMSearchDialogController.cpp

src/plugins_3rdparty/uhmmer/src/u_search/HMMSearchDialogController.h

src/plugins_3rdparty/uhmmer/src/u_search/HMMSearchTask.cpp

src/plugins_3rdparty/uhmmer/src/u_search/HMMSearchTask.h

src/plugins_3rdparty/uhmmer/src/u_search/HMMSearchWorker.cpp

src/plugins_3rdparty/uhmmer/src/u_search/HMMSearchWorker.h

src/plugins_3rdparty/uhmmer/src/u_search/hmmer_ppu.cpp

src/plugins_3rdparty/uhmmer/src/u_search/hmmer_ppu.h

src/plugins_3rdparty/uhmmer/src/u_search/uhmmsearch.cpp

src/plugins_3rdparty/uhmmer/src/u_search/uhmmsearch.h

src/plugins_3rdparty/uhmmer/src/u_search/uhmmsearch_cell.cpp

src/plugins_3rdparty/uhmmer/src/u_search/uhmmsearch_cell.h

src/plugins_3rdparty/uhmmer/src/u_search/ui/

src/plugins_3rdparty/uhmmer/src/u_search/ui/HMMSearchDialog.ui

src/plugins_3rdparty/uhmmer/src/u_spu/

src/plugins_3rdparty/uhmmer/src/u_spu/hmmer_spu.c

src/plugins_3rdparty/uhmmer/src/u_spu/hmmer_spu.h

src/plugins_3rdparty/uhmmer/src/u_spu/hmmercell_spu.c

src/plugins_3rdparty/uhmmer/src/u_spu/makefile

src/plugins_3rdparty/uhmmer/src/u_tests/

src/plugins_3rdparty/uhmmer/src/u_tests/uhmmerTests.cpp

src/plugins_3rdparty/uhmmer/src/u_tests/uhmmerTests.h

src/plugins_3rdparty/uhmmer/transl/

src/plugins_3rdparty/uhmmer/transl/english.ts

src/plugins_3rdparty/uhmmer/transl/russian.ts

src/plugins_3rdparty/uhmmer/uhmmer.pri

src/plugins_3rdparty/uhmmer/uhmmer.pro

src/plugins_3rdparty/umuscle/src/MuscleAdapter.cpp

src/plugins_3rdparty/umuscle/src/MuscleAdapter.h

src/plugins_3rdparty/umuscle/src/MuscleAlignDialogController.cpp

src/plugins_3rdparty/umuscle/src/MuscleAlignDialogController.h

src/plugins_3rdparty/umuscle/src/MuscleConstants.h

src/plugins_3rdparty/umuscle/src/MuscleParallel.cpp

src/plugins_3rdparty/umuscle/src/MuscleParallel.h

src/plugins_3rdparty/umuscle/src/MusclePlugin.cpp

src/plugins_3rdparty/umuscle/src/MusclePlugin.h

src/plugins_3rdparty/umuscle/src/MuscleTask.cpp

src/plugins_3rdparty/umuscle/src/MuscleTask.h

src/plugins_3rdparty/umuscle/src/MuscleUtils.cpp

src/plugins_3rdparty/umuscle/src/MuscleUtils.h

src/plugins_3rdparty/umuscle/src/MuscleWorkPool.cpp

src/plugins_3rdparty/umuscle/src/MuscleWorkPool.h

src/plugins_3rdparty/umuscle/src/MuscleWorker.cpp

src/plugins_3rdparty/umuscle/src/MuscleWorker.h

src/plugins_3rdparty/umuscle/src/TaskLocalStorage.cpp

src/plugins_3rdparty/umuscle/src/TaskLocalStorage.h

src/plugins_3rdparty/umuscle/src/muscle/aligngivenpath.cpp

src/plugins_3rdparty/umuscle/src/muscle/aligngivenpathsw.cpp

src/plugins_3rdparty/umuscle/src/muscle/aligntwomsas.cpp

src/plugins_3rdparty/umuscle/src/muscle/aligntwoprofs.cpp

src/plugins_3rdparty/umuscle/src/muscle/aln.cpp

src/plugins_3rdparty/umuscle/src/muscle/alpha.cpp

src/plugins_3rdparty/umuscle/src/muscle/alpha.h

src/plugins_3rdparty/umuscle/src/muscle/anchors.cpp

src/plugins_3rdparty/umuscle/src/muscle/bittraceback.cpp

src/plugins_3rdparty/umuscle/src/muscle/blosum62.cpp

src/plugins_3rdparty/umuscle/src/muscle/blosumla.cpp

src/plugins_3rdparty/umuscle/src/muscle/clust.cpp

src/plugins_3rdparty/umuscle/src/muscle/clust.h

src/plugins_3rdparty/umuscle/src/muscle/cluster.cpp

src/plugins_3rdparty/umuscle/src/muscle/cluster.h

src/plugins_3rdparty/umuscle/src/muscle/clustset.h

src/plugins_3rdparty/umuscle/src/muscle/clustsetdf.h

src/plugins_3rdparty/umuscle/src/muscle/clustsetmsa.h

src/plugins_3rdparty/umuscle/src/muscle/clwwt.cpp

src/plugins_3rdparty/umuscle/src/muscle/color.cpp

src/plugins_3rdparty/umuscle/src/muscle/cons.cpp

src/plugins_3rdparty/umuscle/src/muscle/diaglist.cpp

src/plugins_3rdparty/umuscle/src/muscle/diaglist.h

src/plugins_3rdparty/umuscle/src/muscle/diffobjscore.cpp

src/plugins_3rdparty/umuscle/src/muscle/diffpaths.cpp

src/plugins_3rdparty/umuscle/src/muscle/difftrees.cpp

src/plugins_3rdparty/umuscle/src/muscle/difftreese.cpp

src/plugins_3rdparty/umuscle/src/muscle/distcalc.cpp

src/plugins_3rdparty/umuscle/src/muscle/distcalc.h

src/plugins_3rdparty/umuscle/src/muscle/distfunc.cpp

src/plugins_3rdparty/umuscle/src/muscle/distfunc.h

src/plugins_3rdparty/umuscle/src/muscle/distpwkimura.cpp

src/plugins_3rdparty/umuscle/src/muscle/domuscle.cpp

src/plugins_3rdparty/umuscle/src/muscle/dosp.cpp

src/plugins_3rdparty/umuscle/src/muscle/dpregionlist.h

src/plugins_3rdparty/umuscle/src/muscle/dpreglist.cpp

src/plugins_3rdparty/umuscle/src/muscle/dpreglist.h

src/plugins_3rdparty/umuscle/src/muscle/drawtree.cpp

src/plugins_3rdparty/umuscle/src/muscle/edgelist.cpp

src/plugins_3rdparty/umuscle/src/muscle/edgelist.h

src/plugins_3rdparty/umuscle/src/muscle/enumopts.cpp

src/plugins_3rdparty/umuscle/src/muscle/enumopts.h

src/plugins_3rdparty/umuscle/src/muscle/enums.h

src/plugins_3rdparty/umuscle/src/muscle/enumtostr.cpp

src/plugins_3rdparty/umuscle/src/muscle/estring.cpp

src/plugins_3rdparty/umuscle/src/muscle/estring.h

src/plugins_3rdparty/umuscle/src/muscle/fasta.cpp

src/plugins_3rdparty/umuscle/src/muscle/fasta2.cpp

src/plugins_3rdparty/umuscle/src/muscle/fastclust.cpp

src/plugins_3rdparty/umuscle/src/muscle/fastdist.cpp

src/plugins_3rdparty/umuscle/src/muscle/fastdistjones.cpp

src/plugins_3rdparty/umuscle/src/muscle/fastdistkbit.cpp

src/plugins_3rdparty/umuscle/src/muscle/fastdistkmer.cpp

src/plugins_3rdparty/umuscle/src/muscle/fastdistmafft.cpp

src/plugins_3rdparty/umuscle/src/muscle/fastdistnuc.cpp

src/plugins_3rdparty/umuscle/src/muscle/fastscorepath2.cpp

src/plugins_3rdparty/umuscle/src/muscle/finddiags.cpp

src/plugins_3rdparty/umuscle/src/muscle/finddiagsn.cpp

src/plugins_3rdparty/umuscle/src/muscle/gapscoredimer.h

src/plugins_3rdparty/umuscle/src/muscle/glbalign.cpp

src/plugins_3rdparty/umuscle/src/muscle/glbalign352.cpp

src/plugins_3rdparty/umuscle/src/muscle/glbaligndiag.cpp

src/plugins_3rdparty/umuscle/src/muscle/glbalignle.cpp

src/plugins_3rdparty/umuscle/src/muscle/glbalignsimple.cpp

src/plugins_3rdparty/umuscle/src/muscle/glbalignsp.cpp

src/plugins_3rdparty/umuscle/src/muscle/glbalignspn.cpp

src/plugins_3rdparty/umuscle/src/muscle/glbalignss.cpp

src/plugins_3rdparty/umuscle/src/muscle/glbalndimer.cpp

src/plugins_3rdparty/umuscle/src/muscle/globals.cpp

src/plugins_3rdparty/umuscle/src/muscle/globalslinux.cpp

src/plugins_3rdparty/umuscle/src/muscle/globalsother.cpp

src/plugins_3rdparty/umuscle/src/muscle/globalswin32.cpp

src/plugins_3rdparty/umuscle/src/muscle/gonnet.cpp

src/plugins_3rdparty/umuscle/src/muscle/gonnet.h

src/plugins_3rdparty/umuscle/src/muscle/gotowt.cpp

src/plugins_3rdparty/umuscle/src/muscle/henikoffweight.cpp

src/plugins_3rdparty/umuscle/src/muscle/henikoffweightpb.cpp

src/plugins_3rdparty/umuscle/src/muscle/html.cpp

src/plugins_3rdparty/umuscle/src/muscle/hydro.cpp

src/plugins_3rdparty/umuscle/src/muscle/intmath.cpp

src/plugins_3rdparty/umuscle/src/muscle/intmath.h

src/plugins_3rdparty/umuscle/src/muscle/local.cpp

src/plugins_3rdparty/umuscle/src/muscle/main.cpp

src/plugins_3rdparty/umuscle/src/muscle/makerootmsa.cpp

src/plugins_3rdparty/umuscle/src/muscle/makerootmsab.cpp

src/plugins_3rdparty/umuscle/src/muscle/maketree.cpp

src/plugins_3rdparty/umuscle/src/muscle/mhack.cpp

src/plugins_3rdparty/umuscle/src/muscle/mpam200.cpp

src/plugins_3rdparty/umuscle/src/muscle/msa.cpp

src/plugins_3rdparty/umuscle/src/muscle/msa.h

src/plugins_3rdparty/umuscle/src/muscle/msa2.cpp

src/plugins_3rdparty/umuscle/src/muscle/msadist.h

src/plugins_3rdparty/umuscle/src/muscle/msadistkimura.cpp

src/plugins_3rdparty/umuscle/src/muscle/msf.cpp

src/plugins_3rdparty/umuscle/src/muscle/muscle.cpp

src/plugins_3rdparty/umuscle/src/muscle/muscle.h

src/plugins_3rdparty/umuscle/src/muscle/muscle_context.cpp

src/plugins_3rdparty/umuscle/src/muscle/muscle_context.h

src/plugins_3rdparty/umuscle/src/muscle/muscleout.cpp

src/plugins_3rdparty/umuscle/src/muscle/nucmx.cpp

src/plugins_3rdparty/umuscle/src/muscle/nwdasimple.cpp

src/plugins_3rdparty/umuscle/src/muscle/nwdasimple2.cpp

src/plugins_3rdparty/umuscle/src/muscle/nwdasmall.cpp

src/plugins_3rdparty/umuscle/src/muscle/nwrec.cpp

src/plugins_3rdparty/umuscle/src/muscle/nwsmall.cpp

src/plugins_3rdparty/umuscle/src/muscle/objscore.cpp

src/plugins_3rdparty/umuscle/src/muscle/objscore.h

src/plugins_3rdparty/umuscle/src/muscle/objscore2.cpp

src/plugins_3rdparty/umuscle/src/muscle/objscoreda.cpp

src/plugins_3rdparty/umuscle/src/muscle/onexception.cpp

src/plugins_3rdparty/umuscle/src/muscle/options.cpp

src/plugins_3rdparty/umuscle/src/muscle/outweights.cpp

src/plugins_3rdparty/umuscle/src/muscle/pam200mafft.cpp

src/plugins_3rdparty/umuscle/src/muscle/params.cpp

src/plugins_3rdparty/umuscle/src/muscle/params.h

src/plugins_3rdparty/umuscle/src/muscle/phy.cpp

src/plugins_3rdparty/umuscle/src/muscle/phy2.cpp

src/plugins_3rdparty/umuscle/src/muscle/phy3.cpp

src/plugins_3rdparty/umuscle/src/muscle/phy4.cpp

src/plugins_3rdparty/umuscle/src/muscle/phyfromclust.cpp

src/plugins_3rdparty/umuscle/src/muscle/phyfromfile.cpp

src/plugins_3rdparty/umuscle/src/muscle/physeq.cpp

src/plugins_3rdparty/umuscle/src/muscle/phytofile.cpp

src/plugins_3rdparty/umuscle/src/muscle/posgap.cpp

src/plugins_3rdparty/umuscle/src/muscle/ppscore.cpp

src/plugins_3rdparty/umuscle/src/muscle/profdb.cpp

src/plugins_3rdparty/umuscle/src/muscle/profile.cpp

src/plugins_3rdparty/umuscle/src/muscle/profile.h

src/plugins_3rdparty/umuscle/src/muscle/profilefrommsa.cpp

src/plugins_3rdparty/umuscle/src/muscle/progalign.cpp

src/plugins_3rdparty/umuscle/src/muscle/progress.cpp

src/plugins_3rdparty/umuscle/src/muscle/progressivealign.cpp

src/plugins_3rdparty/umuscle/src/muscle/pwpath.cpp

src/plugins_3rdparty/umuscle/src/muscle/pwpath.h

src/plugins_3rdparty/umuscle/src/muscle/readmx.cpp

src/plugins_3rdparty/umuscle/src/muscle/realigndiffs.cpp

src/plugins_3rdparty/umuscle/src/muscle/realigndiffse.cpp

src/plugins_3rdparty/umuscle/src/muscle/refine.cpp

src/plugins_3rdparty/umuscle/src/muscle/refinehoriz.cpp

src/plugins_3rdparty/umuscle/src/muscle/refinesubfams.cpp

src/plugins_3rdparty/umuscle/src/muscle/refinetree.cpp

src/plugins_3rdparty/umuscle/src/muscle/refinetreee.cpp

src/plugins_3rdparty/umuscle/src/muscle/refinevert.cpp

src/plugins_3rdparty/umuscle/src/muscle/refinew.cpp

src/plugins_3rdparty/umuscle/src/muscle/savebest.cpp

src/plugins_3rdparty/umuscle/src/muscle/scoredist.cpp

src/plugins_3rdparty/umuscle/src/muscle/scoregaps.cpp

src/plugins_3rdparty/umuscle/src/muscle/scorehistory.cpp

src/plugins_3rdparty/umuscle/src/muscle/scorehistory.h

src/plugins_3rdparty/umuscle/src/muscle/scorepp.cpp

src/plugins_3rdparty/umuscle/src/muscle/seq.cpp

src/plugins_3rdparty/umuscle/src/muscle/seq.h

src/plugins_3rdparty/umuscle/src/muscle/seqvect.cpp

src/plugins_3rdparty/umuscle/src/muscle/seqvect.h

src/plugins_3rdparty/umuscle/src/muscle/setblosumweights.cpp

src/plugins_3rdparty/umuscle/src/muscle/setgscweights.cpp

src/plugins_3rdparty/umuscle/src/muscle/setnewhandler.cpp

src/plugins_3rdparty/umuscle/src/muscle/spfast.cpp

src/plugins_3rdparty/umuscle/src/muscle/sptest.cpp

src/plugins_3rdparty/umuscle/src/muscle/stabilize.cpp

src/plugins_3rdparty/umuscle/src/muscle/subfam.cpp

src/plugins_3rdparty/umuscle/src/muscle/subfams.cpp

src/plugins_3rdparty/umuscle/src/muscle/sw.cpp

src/plugins_3rdparty/umuscle/src/muscle/termgaps.cpp

src/plugins_3rdparty/umuscle/src/muscle/textfile.cpp

src/plugins_3rdparty/umuscle/src/muscle/textfile.h

src/plugins_3rdparty/umuscle/src/muscle/threewaywt.cpp

src/plugins_3rdparty/umuscle/src/muscle/timing.h

src/plugins_3rdparty/umuscle/src/muscle/tomhydro.cpp

src/plugins_3rdparty/umuscle/src/muscle/traceback.cpp

src/plugins_3rdparty/umuscle/src/muscle/tracebackopt.cpp

src/plugins_3rdparty/umuscle/src/muscle/tracebacksw.cpp

src/plugins_3rdparty/umuscle/src/muscle/tree.h

src/plugins_3rdparty/umuscle/src/muscle/treefrommsa.cpp

src/plugins_3rdparty/umuscle/src/muscle/types.h

src/plugins_3rdparty/umuscle/src/muscle/typetostr.cpp

src/plugins_3rdparty/umuscle/src/muscle/unixio.h

src/plugins_3rdparty/umuscle/src/muscle/upgma2.cpp

src/plugins_3rdparty/umuscle/src/muscle/usage.cpp

src/plugins_3rdparty/umuscle/src/muscle/validateids.cpp

src/plugins_3rdparty/umuscle/src/muscle/vtml2.cpp

src/plugins_3rdparty/umuscle/src/muscle/writescorefile.cpp

src/plugins_3rdparty/umuscle/src/refinehorizP.cpp

src/plugins_3rdparty/umuscle/src/refinevertP.cpp

src/plugins_3rdparty/umuscle/src/ui/MuscleAlignDialog.ui

src/plugins_3rdparty/umuscle/src/umuscle_tests/umuscleTests.cpp

src/plugins_3rdparty/umuscle/src/umuscle_tests/umuscleTests.h

src/plugins_3rdparty/umuscle/transl/czech.ts

src/plugins_3rdparty/umuscle/transl/english.ts

src/plugins_3rdparty/umuscle/transl/russian.ts

src/plugins_3rdparty/umuscle/umuscle.pri

src/plugins_3rdparty/umuscle/umuscle.pro

src/qtranslate.cmd

src/ugene/images/

src/ugene/images/about.png

src/ugene/images/add_existing_document.png

src/ugene/images/add_new_document.png

src/ugene/images/advanced_open.png

src/ugene/images/bin_empty.png

src/ugene/images/book_open.png

src/ugene/images/cancel.png

src/ugene/images/clock.png

src/ugene/images/create_new_project.png

src/ugene/images/ext.ico

src/ugene/images/hourglass.png

src/ugene/images/hourglass_err.png

src/ugene/images/hourglass_go.png

src/ugene/images/hourglass_ok.png

src/ugene/images/lightbulb.png

src/ugene/images/lightbulb_off.png

src/ugene/images/log_settings.png

src/ugene/images/net_settings.png

src/ugene/images/originals/

src/ugene/images/originals/ugene_128.png

src/ugene/images/originals/ugene_16.png

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src/ugene/images/originals/ugene_48.png

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src/ugene/images/plugins.png

src/ugene/images/project.png

src/ugene/images/project_new.png

src/ugene/images/project_open.png

src/ugene/images/project_save.png

src/ugene/images/save_selected_documents.png

src/ugene/images/script_registry.png

src/ugene/images/service.png

src/ugene/images/task_report.png

src/ugene/images/ugene.ico

src/ugene/images/ugene_16.png

src/ugene/images/ugene_32.xpm

src/ugene/images/ugene_mac.icns

src/ugene/images/window_cascade.png

src/ugene/images/window_next.png

src/ugene/images/window_prev.png

src/ugene/images/window_tile.png

src/ugene/src/AppContextImpl.h

src/ugene/src/AppGlobals.h

src/ugene/src/CorePlugin.h

src/ugene/src/CoreServiceTypes.h

src/ugene/src/DocumentFormatRegistryImpl.cpp

src/ugene/src/DocumentFormatRegistryImpl.h

src/ugene/src/IOAdapterRegistryImpl.cpp

src/ugene/src/IOAdapterRegistryImpl.h

src/ugene/src/Main.cpp

src/ugene/src/SettingsImpl.cpp

src/ugene/src/SettingsImpl.h

src/ugene/src/app_settings/

src/ugene/src/app_settings/AppSettingsDialogController.cpp

src/ugene/src/app_settings/AppSettingsDialogController.h

src/ugene/src/app_settings/AppSettingsDialogTree.h

src/ugene/src/app_settings/AppSettingsGUIImpl.cpp

src/ugene/src/app_settings/AppSettingsGUIImpl.h

src/ugene/src/app_settings/AppSettingsImpl.cpp

src/ugene/src/app_settings/AppSettingsImpl.h

src/ugene/src/app_settings/logview_settings/

src/ugene/src/app_settings/logview_settings/LogSettingsGUIController.cpp

src/ugene/src/app_settings/logview_settings/LogSettingsGUIController.h

src/ugene/src/app_settings/logview_settings/ui/

src/ugene/src/app_settings/logview_settings/ui/LogSettingsWidget.ui

src/ugene/src/app_settings/network_settings/

src/ugene/src/app_settings/network_settings/NetworkSettingsGUIController.cpp

src/ugene/src/app_settings/network_settings/NetworkSettingsGUIController.h

src/ugene/src/app_settings/network_settings/ui/

src/ugene/src/app_settings/network_settings/ui/NetworkSettingsWidget.ui

src/ugene/src/app_settings/ui/

src/ugene/src/app_settings/ui/AppSettingsDialog.ui

src/ugene/src/app_settings/user_apps_settings/

src/ugene/src/app_settings/user_apps_settings/UserApplicationsSettingsGUIController.cpp

src/ugene/src/app_settings/user_apps_settings/UserApplicationsSettingsGUIController.h

src/ugene/src/app_settings/user_apps_settings/ui/

src/ugene/src/app_settings/user_apps_settings/ui/UserApplicationsSettingsWidget.ui

src/ugene/src/logview/

src/ugene/src/logview/LogCache.cpp

src/ugene/src/logview/LogCache.h

src/ugene/src/logview/LogSettings.cpp

src/ugene/src/logview/LogSettings.h

src/ugene/src/logview/LogView.cpp

src/ugene/src/logview/LogView.h

src/ugene/src/main_window/

src/ugene/src/main_window/AboutDialogController.cpp

src/ugene/src/main_window/AboutDialogController.h

src/ugene/src/main_window/CheckUpdatesTask.cpp

src/ugene/src/main_window/CheckUpdatesTask.h

src/ugene/src/main_window/DockManagerImpl.cpp

src/ugene/src/main_window/DockManagerImpl.h

src/ugene/src/main_window/MDIManagerImpl.cpp

src/ugene/src/main_window/MDIManagerImpl.h

src/ugene/src/main_window/MainWindowImpl.cpp

src/ugene/src/main_window/MainWindowImpl.h

src/ugene/src/main_window/MenuManager.cpp

src/ugene/src/main_window/MenuManager.h

src/ugene/src/main_window/ShutdownTask.cpp

src/ugene/src/main_window/ShutdownTask.h

src/ugene/src/main_window/ToolBarManager.cpp

src/ugene/src/main_window/ToolBarManager.h

src/ugene/src/main_window/ui/

src/ugene/src/main_window/ui/AboutDialog.ui

src/ugene/src/plugin_support/

src/ugene/src/plugin_support/PluginSupportImpl.cpp

src/ugene/src/plugin_support/PluginSupportImpl.h

src/ugene/src/plugin_support/ServiceRegistryImpl.cpp

src/ugene/src/plugin_support/ServiceRegistryImpl.h

src/ugene/src/plugin_viewer/

src/ugene/src/plugin_viewer/PluginViewerController.cpp

src/ugene/src/plugin_viewer/PluginViewerController.h

src/ugene/src/plugin_viewer/PluginViewerImpl.cpp

src/ugene/src/plugin_viewer/PluginViewerImpl.h

src/ugene/src/plugin_viewer/ui/

src/ugene/src/plugin_viewer/ui/PluginViewerWidget.ui

src/ugene/src/project_support/

src/ugene/src/project_support/ProjectImpl.cpp

src/ugene/src/project_support/ProjectImpl.h

src/ugene/src/project_support/ProjectLoaderImpl.cpp

src/ugene/src/project_support/ProjectLoaderImpl.h

src/ugene/src/project_support/ProjectServiceImpl.cpp

src/ugene/src/project_support/ProjectServiceImpl.h

src/ugene/src/project_support/ProjectTasks.cpp

src/ugene/src/project_support/ProjectTasks.h

src/ugene/src/project_support/ui/

src/ugene/src/project_support/ui/CreateNewProjectWidget.ui

src/ugene/src/project_view/

src/ugene/src/project_view/BuiltInObjectViews.cpp

src/ugene/src/project_view/ProjectViewDocTree.cpp

src/ugene/src/project_view/ProjectViewDocTree.h

src/ugene/src/project_view/ProjectViewImpl.cpp

src/ugene/src/project_view/ProjectViewImpl.h

src/ugene/src/project_view/ui/

src/ugene/src/project_view/ui/ProjectViewWidget.ui

src/ugene/src/script_registry/

src/ugene/src/script_registry/ScriptManagerView.cpp

src/ugene/src/script_registry/ScriptManagerView.h

src/ugene/src/script_registry/ScriptManagerWidgetImpl.cpp

src/ugene/src/script_registry/ScriptManagerWidgetImpl.h

src/ugene/src/script_registry/ui/

src/ugene/src/script_registry/ui/ScriptManagerWidget.ui

src/ugene/src/task_scheduler/

src/ugene/src/task_scheduler/TaskSchedulerImpl.cpp

src/ugene/src/task_scheduler/TaskSchedulerImpl.h

src/ugene/src/task_view/

src/ugene/src/task_view/TaskStatusBar.cpp

src/ugene/src/task_view/TaskStatusBar.h

src/ugene/src/task_view/TaskViewController.cpp

src/ugene/src/task_view/TaskViewController.h

src/ugene/transl/

src/ugene/transl/english.ts

src/ugene/transl/russian.ts

src/ugene/ugene.pri

src/ugene/ugene.pro

src/ugene/ugene.qrc

src/ugene/ugene.rc

src/ugene_globals.pri

src/ugene_lib_common.pri

src/ugene_plugin_common.pri

src/ugene_plugin_descriptor.pri

src/ugene_version.pri

src/ugenecl/images/

src/ugenecl/images/ext.ico

src/ugenecl/images/ugene.ico

src/ugenecl/images/ugenecl_mac.icns

src/ugenecl/src/

src/ugenecl/src/DumpHelpTask.cpp

src/ugenecl/src/DumpHelpTask.h

src/ugenecl/src/DumpLicenseTask.cpp

src/ugenecl/src/DumpLicenseTask.h

src/ugenecl/src/DumpVersionTask.cpp

src/ugenecl/src/DumpVersionTask.h

src/ugenecl/src/ForeverTask.cpp

src/ugenecl/src/ForeverTask.h

src/ugenecl/src/LogDriver.cpp

src/ugenecl/src/LogDriver.h

src/ugenecl/src/Main.cpp

src/ugenecl/src/ShutdownTask.cpp

src/ugenecl/src/ShutdownTask.h

src/ugenecl/src/TaskStatusBar.cpp

src/ugenecl/src/TaskStatusBar.h

src/ugenecl/src/TestStarter.cpp

src/ugenecl/src/TestStarter.h

src/ugenecl/ugenecl.pri

src/ugenecl/ugenecl.pro

src/ugenecl/ugenecl.rc

src/ugenem/images/

src/ugenem/images/crash_icon.png

src/ugenem/src/

src/ugenem/src/SendReportDialog.cpp

src/ugenem/src/SendReportDialog.h

src/ugenem/src/main.cpp

src/ugenem/src/ui/

src/ugenem/src/ui/SendReportDialog.ui

src/ugenem/ugenem.pro

src/ugenem/ugenem.qrc

src/ugenem/ugenem.rc

src/ugeneui/images/

src/ugeneui/images/about.png

src/ugeneui/images/add_existing_document.png

src/ugeneui/images/add_new_document.png

src/ugeneui/images/advanced_open.png

src/ugeneui/images/bin_empty.png

src/ugeneui/images/book_open.png

src/ugeneui/images/cancel.png

src/ugeneui/images/clock.png

src/ugeneui/images/create_new_project.png

src/ugeneui/images/empty_notification.png

src/ugeneui/images/ext.ico

src/ugeneui/images/has_error.png

src/ugeneui/images/has_report.png

src/ugeneui/images/hourglass.png

src/ugeneui/images/hourglass_err.png

src/ugeneui/images/hourglass_go.png

src/ugeneui/images/hourglass_ok.png

src/ugeneui/images/lightbulb.png

src/ugeneui/images/lightbulb_off.png

src/ugeneui/images/log_settings.png

src/ugeneui/images/net_settings.png

src/ugeneui/images/originals/

src/ugeneui/images/originals/ugene_128.png

src/ugeneui/images/originals/ugene_16.png

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src/ugeneui/images/originals/ugene_48.png

src/ugeneui/images/originals/ugene_64.png

src/ugeneui/images/plugins.png

src/ugeneui/images/preferences.png

src/ugeneui/images/project.png

src/ugeneui/images/project_filter.png

src/ugeneui/images/project_new.png

src/ugeneui/images/project_open.png

src/ugeneui/images/project_save.png

src/ugeneui/images/relocate.png

src/ugeneui/images/save_copy.png

src/ugeneui/images/save_selected_documents.png

src/ugeneui/images/script_registry.png

src/ugeneui/images/service.png

src/ugeneui/images/task_report.png

src/ugeneui/images/ugene.ico

src/ugeneui/images/ugene_16.png

src/ugeneui/images/ugene_32.xpm

src/ugeneui/images/ugeneui.icns

src/ugeneui/images/window_cascade.png

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src/ugeneui/images/window_tile.png

src/ugeneui/images/world_go.png

src/ugeneui/src/

src/ugeneui/src/Main.cpp

src/ugeneui/src/app_settings/

src/ugeneui/src/app_settings/AppSettingsDialogController.cpp

src/ugeneui/src/app_settings/AppSettingsDialogController.h

src/ugeneui/src/app_settings/AppSettingsDialogTree.h

src/ugeneui/src/app_settings/AppSettingsGUIImpl.cpp

src/ugeneui/src/app_settings/AppSettingsGUIImpl.h

src/ugeneui/src/app_settings/logview_settings/

src/ugeneui/src/app_settings/logview_settings/LogSettingsGUIController.cpp

src/ugeneui/src/app_settings/logview_settings/LogSettingsGUIController.h

src/ugeneui/src/app_settings/logview_settings/ui/

src/ugeneui/src/app_settings/logview_settings/ui/LogSettingsWidget.ui

src/ugeneui/src/app_settings/network_settings/

src/ugeneui/src/app_settings/network_settings/NetworkSettingsGUIController.cpp

src/ugeneui/src/app_settings/network_settings/NetworkSettingsGUIController.h

src/ugeneui/src/app_settings/network_settings/ui/

src/ugeneui/src/app_settings/network_settings/ui/NetworkSettingsWidget.ui

src/ugeneui/src/app_settings/resource_settings/

src/ugeneui/src/app_settings/resource_settings/ResourceSettingsGUIController.cpp

src/ugeneui/src/app_settings/resource_settings/ResourceSettingsGUIController.h

src/ugeneui/src/app_settings/resource_settings/ui/

src/ugeneui/src/app_settings/resource_settings/ui/ResourceSettingsWidget.ui

src/ugeneui/src/app_settings/ui/

src/ugeneui/src/app_settings/ui/AppSettingsDialog.ui

src/ugeneui/src/app_settings/user_apps_settings/

src/ugeneui/src/app_settings/user_apps_settings/UserApplicationsSettingsGUIController.cpp

src/ugeneui/src/app_settings/user_apps_settings/UserApplicationsSettingsGUIController.h

src/ugeneui/src/app_settings/user_apps_settings/ui/

src/ugeneui/src/app_settings/user_apps_settings/ui/UserApplicationsSettingsWidget.ui

src/ugeneui/src/main_window/

src/ugeneui/src/main_window/AboutDialogController.cpp

src/ugeneui/src/main_window/AboutDialogController.h

src/ugeneui/src/main_window/CheckUpdatesTask.cpp

src/ugeneui/src/main_window/CheckUpdatesTask.h

src/ugeneui/src/main_window/DockManagerImpl.cpp

src/ugeneui/src/main_window/DockManagerImpl.h

src/ugeneui/src/main_window/MDIManagerImpl.cpp

src/ugeneui/src/main_window/MDIManagerImpl.h

src/ugeneui/src/main_window/MainWindowImpl.cpp

src/ugeneui/src/main_window/MainWindowImpl.h

src/ugeneui/src/main_window/MenuManager.cpp

src/ugeneui/src/main_window/MenuManager.h

src/ugeneui/src/main_window/ShutdownTask.cpp

src/ugeneui/src/main_window/ShutdownTask.h

src/ugeneui/src/main_window/ToolBarManager.cpp

src/ugeneui/src/main_window/ToolBarManager.h

src/ugeneui/src/main_window/ui/

src/ugeneui/src/main_window/ui/AboutDialog.ui

src/ugeneui/src/plugin_viewer/

src/ugeneui/src/plugin_viewer/PluginViewerController.cpp

src/ugeneui/src/plugin_viewer/PluginViewerController.h

src/ugeneui/src/plugin_viewer/PluginViewerImpl.cpp

src/ugeneui/src/plugin_viewer/PluginViewerImpl.h

src/ugeneui/src/plugin_viewer/ui/

src/ugeneui/src/plugin_viewer/ui/PluginViewerWidget.ui

src/ugeneui/src/project_support/

src/ugeneui/src/project_support/DocumentFormatSelectorController.cpp

src/ugeneui/src/project_support/DocumentFormatSelectorController.h

src/ugeneui/src/project_support/DocumentReadingModeSelectorController.cpp

src/ugeneui/src/project_support/DocumentReadingModeSelectorController.h

src/ugeneui/src/project_support/ExportProjectDialogController.cpp

src/ugeneui/src/project_support/ExportProjectDialogController.h

src/ugeneui/src/project_support/ProjectImpl.cpp

src/ugeneui/src/project_support/ProjectImpl.h

src/ugeneui/src/project_support/ProjectLoaderImpl.cpp

src/ugeneui/src/project_support/ProjectLoaderImpl.h

src/ugeneui/src/project_support/ProjectServiceImpl.cpp

src/ugeneui/src/project_support/ProjectServiceImpl.h

src/ugeneui/src/project_support/ProjectTasksGui.cpp

src/ugeneui/src/project_support/ProjectTasksGui.h

src/ugeneui/src/project_support/ui/

src/ugeneui/src/project_support/ui/CreateNewProjectWidget.ui

src/ugeneui/src/project_support/ui/DocumentFormatSelectorDialog.ui

src/ugeneui/src/project_support/ui/ExportProjectDialog.ui

src/ugeneui/src/project_support/ui/SequenceReadingModeSelectorDialog.ui

src/ugeneui/src/project_view/

src/ugeneui/src/project_view/BuiltInObjectViews.cpp

src/ugeneui/src/project_view/ProjectViewDocTree.cpp

src/ugeneui/src/project_view/ProjectViewDocTree.h

src/ugeneui/src/project_view/ProjectViewImpl.cpp

src/ugeneui/src/project_view/ProjectViewImpl.h

src/ugeneui/src/project_view/ui/

src/ugeneui/src/project_view/ui/ProjectViewWidget.ui

src/ugeneui/src/script/

src/ugeneui/src/script/ui/

src/ugeneui/src/script/ui/ScriptLibraryEditor.ui

src/ugeneui/src/shtirlitz/

src/ugeneui/src/shtirlitz/Shtirlitz.cpp

src/ugeneui/src/shtirlitz/Shtirlitz.h

src/ugeneui/src/task_view/

src/ugeneui/src/task_view/TaskStatusBar.cpp

src/ugeneui/src/task_view/TaskStatusBar.h

src/ugeneui/src/task_view/TaskViewController.cpp

src/ugeneui/src/task_view/TaskViewController.h

src/ugeneui/transl/

src/ugeneui/transl/czech.ts

src/ugeneui/transl/english.ts

src/ugeneui/transl/russian.ts

src/ugeneui/ugeneui.pri

src/ugeneui/ugeneui.pro

src/ugeneui/ugeneui.qrc

src/ugeneui/ugeneui.rc

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