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- Committer: Package Import Robot
- Date: 2011-11-02 13:29:07 UTC
- mfrom: (1.2.1) (3.1.11 natty)
- Revision ID: package-import@ubuntu.com-20111102132907-o34gwnt0uj5g6hen
* First release to Debian
- added README.Debian
- increased policy version to 3.9.2
- added URLs for version control system
* Added debug package.
- added README.Debian
- increased policy version to 3.9.2
- added URLs for version control system
* Added debug package.
- files added:
- data/back_translation
- data/back_translation/Bacteria
- data/back_translation/Invertebrates
- data/back_translation/Mammalia
- data/back_translation/Plants
- data/back_translation/Primates
- data/back_translation/Rodents
- data/back_translation/Vertebrates
- data/back_translation/Viruses
- data/back_translation/Yeast
- data/biostruct3d_plugin
- data/cmdline
- data/enzymes
- data/position_weight_matrix
- data/position_weight_matrix/JASPAR
- data/position_weight_matrix/JASPAR/fungi
- data/position_weight_matrix/JASPAR/insects
- data/position_weight_matrix/JASPAR/nematodes
- data/position_weight_matrix/JASPAR/plants
- data/position_weight_matrix/JASPAR/urochordates
- data/position_weight_matrix/JASPAR/vertebrates
- data/position_weight_matrix/UniPROBE
- data/position_weight_matrix/UniPROBE/Cell08
- data/position_weight_matrix/UniPROBE/GR09
- data/position_weight_matrix/UniPROBE/NBT06
- data/position_weight_matrix/UniPROBE/PNAS08
- data/primer3
- data/query_samples
- data/samples/ABIF
- data/samples/ACE
- data/samples/CLUSTALW
- data/samples/EMBL
- data/samples/FASTA
- data/samples/FASTQ
- data/samples/GFF
- data/samples/Genbank
- data/samples/HMM
- data/samples/MMDB
- data/samples/MSF
- data/samples/Newick
- data/samples/PDB
- data/samples/Raw
- data/samples/SCF
- data/samples/Stockholm
- data/samples/Swiss-Prot
- data/schemas_private
- data/sitecon_models/eukaryotic
- data/sitecon_models/prokaryotic
- data/weight_matrix
- data/workflow_samples
- data/workflow_samples/Alignment
- data/workflow_samples/Conversions
- data/workflow_samples/Custom elements
- data/workflow_samples/DNA assembly
- data/workflow_samples/HMMER
- data/workflow_samples/Transcriptomics
- data/workflow_samples/users
- debian/patches
- debian/source
- installer/linux
- installer/linux/fedora
- installer/linux/fedora/devel
- installer/linux/ubuntu
- installer/linux/ubuntu/debian
- installer/linux/ubuntu/debian/source
- installer/macosx
- installer/macosx/build
- installer/macosx/qt_menu.nib
- installer/macosx/scripts
- installer/macosx/ugene.pmdoc
- installer/windows
- installer/windows/images
- src/corelibs
- src/corelibs/U2Algorithm
- src/corelibs/U2Algorithm/src
- src/corelibs/U2Algorithm/src/molecular_geometry
- src/corelibs/U2Algorithm/src/phyltree
- src/corelibs/U2Algorithm/src/registry
- src/corelibs/U2Algorithm/src/smith_waterman
- src/corelibs/U2Algorithm/src/structural_alignment
- src/corelibs/U2Algorithm/src/util_algorithm
- src/corelibs/U2Algorithm/src/util_cds
- src/corelibs/U2Algorithm/src/util_dna_assembly
- src/corelibs/U2Algorithm/src/util_gpu
- src/corelibs/U2Algorithm/src/util_gpu/opencl
- src/corelibs/U2Algorithm/src/util_msa_consensus
- src/corelibs/U2Algorithm/src/util_msa_distance
- src/corelibs/U2Algorithm/src/util_msaedit
- src/corelibs/U2Algorithm/src/util_repeat_finder
- src/corelibs/U2Algorithm/src/util_weight_matrix
- src/corelibs/U2Algorithm/transl
- src/corelibs/U2Core
- src/corelibs/U2Core/src
- src/corelibs/U2Core/src/cmdline
- src/corelibs/U2Core/src/datatype
- src/corelibs/U2Core/src/dbi
- src/corelibs/U2Core/src/globals
- src/corelibs/U2Core/src/gobjects
- src/corelibs/U2Core/src/io
- src/corelibs/U2Core/src/models
- src/corelibs/U2Core/src/selection
- src/corelibs/U2Core/src/tasks
- src/corelibs/U2Core/src/util_algorithm
- src/corelibs/U2Core/src/util_text
- src/corelibs/U2Core/transl
- src/corelibs/U2Designer
- src/corelibs/U2Designer/src
- src/corelibs/U2Designer/transl
- src/corelibs/U2Formats
- src/corelibs/U2Formats/datafiles
- src/corelibs/U2Formats/src
- src/corelibs/U2Formats/src/tasks
- src/corelibs/U2Formats/transl
- src/corelibs/U2Gui
- src/corelibs/U2Gui/images
- src/corelibs/U2Gui/src
- src/corelibs/U2Gui/src/util_gui
- src/corelibs/U2Gui/src/util_gui/logview
- src/corelibs/U2Gui/src/util_gui/ui
- src/corelibs/U2Gui/transl
- src/corelibs/U2Lang
- src/corelibs/U2Lang/src
- src/corelibs/U2Lang/src/library
- src/corelibs/U2Lang/src/model
- src/corelibs/U2Lang/src/support
- src/corelibs/U2Lang/transl
- src/corelibs/U2Misc
- src/corelibs/U2Misc/src
- src/corelibs/U2Misc/src/ui
- src/corelibs/U2Misc/transl
- src/corelibs/U2Private
- src/corelibs/U2Private/src
- src/corelibs/U2Private/transl
- src/corelibs/U2Remote
- src/corelibs/U2Remote/src
- src/corelibs/U2Remote/src/ui
- src/corelibs/U2Remote/transl
- src/corelibs/U2Test
- src/corelibs/U2Test/src
- src/corelibs/U2Test/src/gui_tests
- src/corelibs/U2Test/src/xmltest
- src/corelibs/U2Test/transl
- src/corelibs/U2View
- src/corelibs/U2View/src
- src/corelibs/U2View/src/phyltree
- src/corelibs/U2View/src/phyltree/ui
- src/corelibs/U2View/src/util_dna_assembly
- src/corelibs/U2View/src/util_dna_assembly/ui
- src/corelibs/U2View/src/util_find_dialog
- src/corelibs/U2View/src/util_find_dialog/ui
- src/corelibs/U2View/src/util_msa_align
- src/corelibs/U2View/src/util_msa_align/ui
- src/corelibs/U2View/src/util_ov_annotated_dna
- src/corelibs/U2View/src/util_ov_annotated_dna/ui
- src/corelibs/U2View/src/util_ov_indexview
- src/corelibs/U2View/src/util_ov_indexview/ui
- src/corelibs/U2View/src/util_ov_msaedit
- src/corelibs/U2View/src/util_ov_msaedit/ui
- src/corelibs/U2View/src/util_ov_phyltree
- src/corelibs/U2View/src/util_ov_textview
- src/corelibs/U2View/src/util_sec_struct_predict
- src/corelibs/U2View/src/util_sec_struct_predict/ui
- src/corelibs/U2View/src/util_smith_waterman
- src/corelibs/U2View/src/util_smith_waterman/ui
- src/corelibs/U2View/transl
- src/include
- src/include/U2Algorithm
- src/include/U2Core
- src/include/U2Designer
- src/include/U2Formats
- src/include/U2Gui
- src/include/U2Lang
- src/include/U2Misc
- src/include/U2Remote
- src/include/U2Test
- src/include/U2View
- src/include/opencl
- src/include/opencl/legacy
- src/libs_3rdparty/gtest
- src/libs_3rdparty/gtest/src
- src/libs_3rdparty/gtest/src/gtest
- src/libs_3rdparty/gtest/src/gtest/internal
- src/libs_3rdparty/gtest/src/src
- src/libs_3rdparty/gtest/src/test
- src/libs_3rdparty/qscore
- src/libs_3rdparty/qscore/src
- src/libs_3rdparty/qscore/src/qscore
- src/libs_3rdparty/sqlite3
- src/libs_3rdparty/sqlite3/src
- src/plugins/api_tests
- src/plugins/api_tests/src
- src/plugins/api_tests/src/core
- src/plugins/api_tests/src/core/dbi
- src/plugins/api_tests/src/core/dbi/assembly
- src/plugins/api_tests/src/core/dbi/attribute
- src/plugins/api_tests/src/core/dbi/sequence
- src/plugins/assembly_browser
- src/plugins/assembly_browser/src
- src/plugins/assembly_browser/src/ui
- src/plugins/biostruct3d_view/src/gl2ps
- src/plugins/circular_view
- src/plugins/circular_view/images
- src/plugins/circular_view/src
- src/plugins/circular_view/transl
- src/plugins/cuda_support
- src/plugins/cuda_support/src
- src/plugins/cuda_support/transl
- src/plugins/dbi_bam
- src/plugins/dbi_bam/src
- src/plugins/dbi_file
- src/plugins/dbi_file/src
- src/plugins/dbi_sqlite
- src/plugins/dbi_sqlite/src
- src/plugins/dbi_sqlite/src/assembly
- src/plugins/dna_flexibility
- src/plugins/dna_flexibility/images
- src/plugins/dna_flexibility/src
- src/plugins/dna_flexibility/src/ui
- src/plugins/dna_flexibility/transl
- src/plugins/dna_stat
- src/plugins/dna_stat/src
- src/plugins/dna_stat/src/ui
- src/plugins/dna_stat/transl
- src/plugins/dotplot
- src/plugins/dotplot/images
- src/plugins/dotplot/src
- src/plugins/dotplot/src/ui
- src/plugins/dotplot/transl
- src/plugins/enzymes
- src/plugins/enzymes/images
- src/plugins/enzymes/src
- src/plugins/enzymes/src/ui
- src/plugins/enzymes/transl
- src/plugins/expert_discovery
- src/plugins/expert_discovery/images
- src/plugins/expert_discovery/src
- src/plugins/expert_discovery/src/DDisc
- src/plugins/expert_discovery/src/ui
- src/plugins/expert_discovery/transl
- src/plugins/external_tool_support
- src/plugins/external_tool_support/images
- src/plugins/external_tool_support/src
- src/plugins/external_tool_support/src/blast
- src/plugins/external_tool_support/src/blast_plus
- src/plugins/external_tool_support/src/cap3
- src/plugins/external_tool_support/src/clustalw
- src/plugins/external_tool_support/src/mafft
- src/plugins/external_tool_support/src/tcoffee
- src/plugins/external_tool_support/src/ui
- src/plugins/external_tool_support/src/utils
- src/plugins/external_tool_support/transl
- src/plugins/genome_aligner
- src/plugins/genome_aligner/src
- src/plugins/genome_aligner/src/ui
- src/plugins/genome_aligner/transl
- src/plugins/opencl_support
- src/plugins/opencl_support/src
- src/plugins/opencl_support/transl
- src/plugins/query_designer
- src/plugins/query_designer/images
- src/plugins/query_designer/src
- src/plugins/query_designer/src/library
- src/plugins/query_designer/src/ui
- src/plugins/query_designer/transl
- src/plugins/remote_blast
- src/plugins/remote_blast/images
- src/plugins/remote_blast/src
- src/plugins/remote_blast/src/ui
- src/plugins/remote_blast/transl
- src/plugins/remote_service
- src/plugins/remote_service/src
- src/plugins/remote_service/src/base64
- src/plugins/remote_service/src/ui
- src/plugins/remote_service/transl
- src/plugins/repeat_finder/images
- src/plugins/repeat_finder/src/ui
- src/plugins/smith_waterman
- src/plugins/smith_waterman/src
- src/plugins/smith_waterman/transl
- src/plugins/weight_matrix
- src/plugins/weight_matrix/images
- src/plugins/weight_matrix/src
- src/plugins/weight_matrix/src/ui
- src/plugins/weight_matrix/transl
- src/plugins/workflow_designer/src/cmdline
- src/plugins/workflow_designer/src/util
- src/plugins/workflow_dump
- src/plugins/workflow_dump/src
- src/plugins_3rdparty/ball
- src/plugins_3rdparty/ball/src
- src/plugins_3rdparty/ball/src/include
- src/plugins_3rdparty/ball/src/include/BALL
- src/plugins_3rdparty/ball/src/include/BALL/COMMON
- src/plugins_3rdparty/ball/src/include/BALL/CONCEPT
- src/plugins_3rdparty/ball/src/include/BALL/CONFIG
- src/plugins_3rdparty/ball/src/include/BALL/DATATYPE
- src/plugins_3rdparty/ball/src/include/BALL/MATHS
- src/plugins_3rdparty/ball/src/include/BALL/STRUCTURE
- src/plugins_3rdparty/ball/src/source
- src/plugins_3rdparty/ball/src/source/COMMON
- src/plugins_3rdparty/ball/src/source/CONCEPT
- src/plugins_3rdparty/ball/src/source/DATATYPE
- src/plugins_3rdparty/ball/src/source/MATHS
- src/plugins_3rdparty/ball/src/source/STRUCTURE
- src/plugins_3rdparty/ball/transl
- src/plugins_3rdparty/bowtie
- src/plugins_3rdparty/bowtie/src
- src/plugins_3rdparty/bowtie/src/bowtie
- src/plugins_3rdparty/bowtie/src/bowtie/SeqAn-1.1
- src/plugins_3rdparty/bowtie/src/bowtie/SeqAn-1.1/seqan
- src/plugins_3rdparty/bowtie/src/bowtie/SeqAn-1.1/seqan/basic
- src/plugins_3rdparty/bowtie/src/bowtie/SeqAn-1.1/seqan/file
- src/plugins_3rdparty/bowtie/src/bowtie/SeqAn-1.1/seqan/find
- src/plugins_3rdparty/bowtie/src/bowtie/SeqAn-1.1/seqan/index
- src/plugins_3rdparty/bowtie/src/bowtie/SeqAn-1.1/seqan/sequence
- src/plugins_3rdparty/bowtie/src/bowtie/visualstudio
- src/plugins_3rdparty/bowtie/src/bowtie_tests
- src/plugins_3rdparty/bowtie/src/ui
- src/plugins_3rdparty/bowtie/transl
- src/plugins_3rdparty/gor4
- src/plugins_3rdparty/gor4/datafiles
- src/plugins_3rdparty/gor4/src
- src/plugins_3rdparty/gor4/transl
- src/plugins_3rdparty/hmm2
- src/plugins_3rdparty/hmm2/images
- src/plugins_3rdparty/hmm2/src
- src/plugins_3rdparty/hmm2/src/hmmer2
- src/plugins_3rdparty/hmm2/src/u_build
- src/plugins_3rdparty/hmm2/src/u_build/ui
- src/plugins_3rdparty/hmm2/src/u_calibrate
- src/plugins_3rdparty/hmm2/src/u_calibrate/ui
- src/plugins_3rdparty/hmm2/src/u_search
- src/plugins_3rdparty/hmm2/src/u_search/ui
- src/plugins_3rdparty/hmm2/src/u_spu
- src/plugins_3rdparty/hmm2/src/u_tests
- src/plugins_3rdparty/hmm2/transl
- src/plugins_3rdparty/hmm3
- src/plugins_3rdparty/hmm3/images
- src/plugins_3rdparty/hmm3/src
- src/plugins_3rdparty/hmm3/src/build
- src/plugins_3rdparty/hmm3/src/build/ui
- src/plugins_3rdparty/hmm3/src/format
- src/plugins_3rdparty/hmm3/src/gobject
- src/plugins_3rdparty/hmm3/src/hmmer3
- src/plugins_3rdparty/hmm3/src/hmmer3/easel
- src/plugins_3rdparty/hmm3/src/hmmer3/impl_sse
- src/plugins_3rdparty/hmm3/src/phmmer
- src/plugins_3rdparty/hmm3/src/phmmer/ui
- src/plugins_3rdparty/hmm3/src/search
- src/plugins_3rdparty/hmm3/src/search/ui
- src/plugins_3rdparty/hmm3/src/task_local_storage
- src/plugins_3rdparty/hmm3/src/tests
- src/plugins_3rdparty/hmm3/src/util
- src/plugins_3rdparty/hmm3/transl
- src/plugins_3rdparty/kalign
- src/plugins_3rdparty/kalign/images
- src/plugins_3rdparty/kalign/src
- src/plugins_3rdparty/kalign/src/kalign2
- src/plugins_3rdparty/kalign/src/kalign_tests
- src/plugins_3rdparty/kalign/src/ui
- src/plugins_3rdparty/kalign/transl
- src/plugins_3rdparty/phylip
- src/plugins_3rdparty/phylip/src
- src/plugins_3rdparty/phylip/src/ui
- src/plugins_3rdparty/phylip/transl
- src/plugins_3rdparty/primer3
- src/plugins_3rdparty/primer3/images
- src/plugins_3rdparty/primer3/src
- src/plugins_3rdparty/primer3/src/primer3_core
- src/plugins_3rdparty/primer3/src/ui
- src/plugins_3rdparty/primer3/transl
- src/plugins_3rdparty/psipred
- src/plugins_3rdparty/psipred/datafiles
- src/plugins_3rdparty/psipred/src
- src/plugins_3rdparty/psipred/transl
- src/plugins_3rdparty/ptools
- src/plugins_3rdparty/ptools/src
- src/plugins_3rdparty/ptools/src/ptools
- src/ugenecl
- src/ugenecl/images
- src/ugenecl/src
- src/ugenem
- src/ugenem/images
- src/ugenem/src
- src/ugenem/src/ui
- src/ugeneui
- src/ugeneui/images
- src/ugeneui/images/originals
- src/ugeneui/src
- src/ugeneui/src/app_settings
- src/ugeneui/src/app_settings/logview_settings
- src/ugeneui/src/app_settings/logview_settings/ui
- src/ugeneui/src/app_settings/network_settings
- src/ugeneui/src/app_settings/network_settings/ui
- src/ugeneui/src/app_settings/resource_settings
- src/ugeneui/src/app_settings/resource_settings/ui
- src/ugeneui/src/app_settings/ui
- src/ugeneui/src/app_settings/user_apps_settings
- src/ugeneui/src/app_settings/user_apps_settings/ui
- src/ugeneui/src/main_window
- src/ugeneui/src/main_window/ui
- src/ugeneui/src/plugin_viewer
- src/ugeneui/src/plugin_viewer/ui
- src/ugeneui/src/project_support
- src/ugeneui/src/project_support/ui
- src/ugeneui/src/project_view
- src/ugeneui/src/project_view/ui
- src/ugeneui/src/script
- src/ugeneui/src/script/ui
- src/ugeneui/src/shtirlitz
- src/ugeneui/src/task_view
- src/ugeneui/transl
- files removed:
- data/samples/1CF7.PDB
- scripts
- src/core
- src/core/images
- src/core/src
- src/core/src/core_api
- src/core/src/datatype
- src/core/src/document_format
- src/core/src/gobjects
- src/core/src/ioadapter
- src/core/src/selection
- src/core/src/test_framework
- src/core/src/test_framework/find_algo
- src/core/src/test_framework/xmltest
- src/core/src/util_algorithm
- src/core/src/util_find_dialog
- src/core/src/util_find_dialog/ui
- src/core/src/util_gui
- src/core/src/util_gui/ui
- src/core/src/util_ov_annotated_dna
- src/core/src/util_ov_msaedit
- src/core/src/util_ov_textview
- src/core/src/util_tasks
- src/core/src/util_tasks/SequenceWalkerTests
- src/core/src/util_text
- src/core/src/workflow
- src/core/src/workflow_library
- src/core/src/workflow_support
- src/core/transl
- src/libs_3rdparty/qtbindings_core
- src/libs_3rdparty/qtbindings_core/src
- src/libs_3rdparty/qtbindings_gui
- src/libs_3rdparty/qtbindings_gui/src
- src/libs_3rdparty/qtbindings_xml
- src/libs_3rdparty/qtbindings_xml/src
- src/plugins/remote_request
- src/plugins/remote_request/images
- src/plugins/remote_request/src
- src/plugins/remote_request/src/ui
- src/plugins/remote_request/transl
- src/plugins/test_runner
- src/plugins/test_runner/images
- src/plugins/test_runner/src
- src/plugins/test_runner/src/ui
- src/plugins/test_runner/transl
- src/plugins_3rdparty/uhmmer
- src/plugins_3rdparty/uhmmer/images
- src/plugins_3rdparty/uhmmer/src
- src/plugins_3rdparty/uhmmer/src/hmmer2
- src/plugins_3rdparty/uhmmer/src/u_build
- src/plugins_3rdparty/uhmmer/src/u_build/ui
- src/plugins_3rdparty/uhmmer/src/u_calibrate
- src/plugins_3rdparty/uhmmer/src/u_calibrate/ui
- src/plugins_3rdparty/uhmmer/src/u_search
- src/plugins_3rdparty/uhmmer/src/u_search/ui
- src/plugins_3rdparty/uhmmer/src/u_spu
- src/plugins_3rdparty/uhmmer/src/u_tests
- src/plugins_3rdparty/uhmmer/transl
- src/ugene
- src/ugene/images
- src/ugene/images/originals
- src/ugene/src
- src/ugene/src/app_settings
- src/ugene/src/app_settings/logview_settings
- src/ugene/src/app_settings/logview_settings/ui
- src/ugene/src/app_settings/network_settings
- src/ugene/src/app_settings/network_settings/ui
- src/ugene/src/app_settings/ui
- src/ugene/src/app_settings/user_apps_settings
- src/ugene/src/app_settings/user_apps_settings/ui
- src/ugene/src/logview
- src/ugene/src/main_window
- src/ugene/src/main_window/ui
- src/ugene/src/plugin_support
- src/ugene/src/plugin_viewer
- src/ugene/src/plugin_viewer/ui
- src/ugene/src/project_support
- src/ugene/src/project_support/ui
- src/ugene/src/project_view
- src/ugene/src/project_view/ui
- src/ugene/src/script_registry
- src/ugene/src/script_registry/ui
- src/ugene/src/task_scheduler
- src/ugene/src/task_view
- src/ugene/transl
- files modified:
- COPYRIGHT
added
removed
src/plugins_3rdparty/ptools/ptools.pri
