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Viewing changes to src/plugins_3rdparty/uhmmer/src/u_search/HMMSearchDialogController.h

  • Committer: Package Import Robot
  • Author(s): Steffen Moeller
  • Date: 2011-11-02 13:29:07 UTC
  • mfrom: (1.2.1) (3.1.11 natty)
  • Revision ID: package-import@ubuntu.com-20111102132907-o34gwnt0uj5g6hen
Tags: 1.9.8+repack-1
* First release to Debian
  - added README.Debian
  - increased policy version to 3.9.2
  - added URLs for version control system
* Added debug package.

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src/plugins_3rdparty/uhmmer/src/u_search/HMMSearchDialogController.h
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/*****************************************************************
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* Unipro UGENE - Integrated Bioinformatics Suite
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* Copyright (C) 2008 Unipro, Russia (http://ugene.unipro.ru)
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* All Rights Reserved
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* 
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*     This source code is distributed under the terms of the
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*     GNU General Public License. See the files COPYING and LICENSE
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*     for details.
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*****************************************************************/
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#ifndef _GB2_HMMSEARCH_DIALOG_CONTROLLER_H_
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#define _GB2_HMMSEARCH_DIALOG_CONTROLLER_H_
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#include "uhmmsearch.h"
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#include <ui/ui_HMMSearchDialog.h>
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#include <core_api/Task.h>
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#include <core_api/DocumentModel.h>
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#include <datatype/DNASequence.h>
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#include <datatype/AnnotationData.h>
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#include <QtGui/QDialog>
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#include <QtCore/QPointer>
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struct plan7_s;
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namespace GB2 {
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class CreateAnnotationWidgetController;
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class CreateAnnotationModel;
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class AnnotationTableObject;
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class CreateAnnotationsTask;
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class LoadUnloadedDocumentTask;
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class DNATranslation;
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class HMMSearchTask;
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class HMMSearchTaskResult;
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class DNASequenceObject;
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class HMMReadTask;
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class HMMSearchDialogController : public QDialog, public Ui_HMMSearchDialog {
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    Q_OBJECT
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public:
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    HMMSearchDialogController(const DNASequenceObject* obj, QWidget* p = NULL);
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    ~HMMSearchDialogController();
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public slots:
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    void reject();
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private slots:
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    void sl_hmmFileClicked();
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    void sl_okClicked();
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        void sl_expSpinBoxValueChanged(int); 
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    void sl_onStateChanged();
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    void sl_onProgressChanged();
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private:
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    DNASequence                         dnaSequence;
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    Task*                               searchTask;
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    CreateAnnotationWidgetController*   createController;
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    CreateAnnotationModel*              createModel;
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};    
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//////////////////////////////////////////////////////////////////////////
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// tasks
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class HMMSearchToAnnotationsTask : public Task {
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    Q_OBJECT
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public:
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    HMMSearchToAnnotationsTask(const QString& hmmFile, const DNASequence& s, AnnotationTableObject* aobj,
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        const QString& group, const QString& aname, 
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        const UHMMSearchSettings& settings);
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    virtual QList<Task*> onSubTaskFinished(Task* subTask);
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    QString generateReport() const;
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private:
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    QString                     hmmFile;
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    DNASequence                 dnaSequence;
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    QString                     agroup;
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    QString                     aname;
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    UHMMSearchSettings          settings;
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    HMMReadTask*                readHMMTask;
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    HMMSearchTask*              searchTask;
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    CreateAnnotationsTask*      createAnnotationsTask;
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    QPointer<AnnotationTableObject> aobj;
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};
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}//namespace
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#endif