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<?xml version="1.0" encoding="utf-8"?>
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<TS version="2.0" language="en_US">
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<name>MuscleAlignmentDialog</name>
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<location filename="../src/ui/MuscleAlignDialog.ui" line="14"/>
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<source>Align with MUSCLE</source>
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<translation></translation>
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<location filename="../src/ui/MuscleAlignDialog.ui" line="28"/>
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<translation></translation>
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<location filename="../src/ui/MuscleAlignDialog.ui" line="40"/>
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<source>Mode details:</source>
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<translation></translation>
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<location filename="../src/ui/MuscleAlignDialog.ui" line="54"/>
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<source>Advanced options</source>
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<translation></translation>
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<location filename="../src/ui/MuscleAlignDialog.ui" line="73"/>
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<source>Max iterations</source>
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<translation></translation>
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<location filename="../src/ui/MuscleAlignDialog.ui" line="112"/>
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<source>Max time (minutes)</source>
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<translation></translation>
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<location filename="../src/ui/MuscleAlignDialog.ui" line="157"/>
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<source>Region to align</source>
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<translation></translation>
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<location filename="../src/ui/MuscleAlignDialog.ui" line="243"/>
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<translation></translation>
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<location filename="../src/ui/MuscleAlignDialog.ui" line="176"/>
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<source>Whole alignment</source>
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<translation></translation>
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<location filename="../src/ui/MuscleAlignDialog.ui" line="189"/>
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<source>Column range</source>
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<translation></translation>
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<source>Remote run...</source>
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<translation type="obsolete">Remote run...</translation>
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<location filename="../src/ui/MuscleAlignDialog.ui" line="284"/>
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<source>Align</source>
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<translation></translation>
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<location filename="../src/ui/MuscleAlignDialog.ui" line="294"/>
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<source>Cancel</source>
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<translation></translation>
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<location filename="../src/ui/MuscleAlignDialog.ui" line="60"/>
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<source>Do not re-arrange sequences (-stable)</source>
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<translation></translation>
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<name>U2::LocalWorkflow::MusclePrompter</name>
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<location filename="../src/MuscleWorker.cpp" line="81"/>
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<source> from %1</source>
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<translation></translation>
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<location filename="../src/MuscleWorker.cpp" line="89"/>
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<source>Aligns each MSA supplied <u>%1</u> with MUSCLE using "<u>%2</u>" mode.</source>
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<translation></translation>
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<name>U2::LocalWorkflow::MuscleWorker</name>
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<location filename="../src/MuscleWorker.cpp" line="31"/>
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<source>Input MSA</source>
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<translation></translation>
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<location filename="../src/MuscleWorker.cpp" line="33"/>
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<source>Multiple sequence alignment</source>
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<translation></translation>
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<location filename="../src/MuscleWorker.cpp" line="42"/>
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<source>Mode</source>
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<translation></translation>
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<location filename="../src/MuscleWorker.cpp" line="45"/>
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<source>Stable order</source>
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<translation></translation>
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<location filename="../src/MuscleWorker.cpp" line="32"/>
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<source>Multiple sequence alignment to be processed.</source>
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<translation></translation>
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<location filename="../src/MuscleWorker.cpp" line="33"/>
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<source>Result of alignment.</source>
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<translation></translation>
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<location filename="../src/MuscleWorker.cpp" line="52"/>
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<source>Align with MUSCLE</source>
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<translation type="unfinished"></translation>
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<location filename="../src/MuscleWorker.cpp" line="53"/>
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<source>MUSCLE is public domain multiple alignment software for protein and nucleotide sequences.<p><dfn>MUSCLE stands for MUltiple Sequence Comparison by Log-Expectation.</dfn></p></source>
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<translation></translation>
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<location filename="../src/MuscleWorker.cpp" line="121"/>
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<source>An empty MSA has been supplied to MUSCLE.</source>
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<translation type="unfinished"></translation>
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<location filename="../src/MuscleWorker.cpp" line="137"/>
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<source>Aligned %1 with MUSCLE</source>
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<translation></translation>
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<location filename="../src/MuscleWorker.cpp" line="43"/>
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<source>Selector of preset configurations, that give you the choice of optimizing accuracy, speed, or some compromise between the two. The default favors accuracy.</source>
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<translation></translation>
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<location filename="../src/MuscleWorker.cpp" line="46"/>
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<source>Do not rearrange aligned sequences (-stable switch of MUSCLE). <p>Otherwise, MUSCLE re-arranges sequences so that similar sequences are adjacent in the output file. This makes the alignment easier to evaluate by eye. </source>
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<translation></translation>
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<name>U2::MuscleAdapter</name>
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<location filename="../src/MuscleAdapter.cpp" line="49"/>
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<source>No sequences in input file</source>
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<translation></translation>
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<location filename="../src/MuscleAdapter.cpp" line="76"/>
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<source>alignment_is_empty</source>
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<translation>Alignment is empty</translation>
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<location filename="../src/MuscleAdapter.cpp" line="27"/>
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<location filename="../src/MuscleAdapter.cpp" line="175"/>
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<location filename="../src/MuscleAdapter.cpp" line="260"/>
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<location filename="../src/MuscleAdapter.cpp" line="442"/>
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<source>Internal MUSCLE error: %1</source>
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<translation></translation>
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<location filename="../src/MuscleAdapter.cpp" line="253"/>
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<source>Invalid input alignment</source>
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<translation></translation>
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<location filename="../src/MuscleAdapter.cpp" line="269"/>
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<location filename="../src/MuscleAdapter.cpp" line="451"/>
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<source>Incompatible alphabets</source>
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<translation></translation>
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<location filename="../src/MuscleAdapter.cpp" line="298"/>
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<source>Aligning profiles</source>
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<translation></translation>
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<location filename="../src/MuscleAdapter.cpp" line="301"/>
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<source>Building output</source>
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<translation></translation>
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<location filename="../src/MuscleAdapter.cpp" line="480"/>
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<source>Aligning sequence %1 of %2</source>
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<translation></translation>
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<location filename="../src/MuscleAdapter.cpp" line="512"/>
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<source>Merging results: %1 of %2</source>
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<translation></translation>
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<location filename="../src/MuscleUtils.cpp" line="69"/>
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<source>Unsupported alphabet: %1</source>
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<translation></translation>
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<name>U2::MuscleAddSequencesToProfileTask</name>
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<location filename="../src/MuscleTask.cpp" line="213"/>
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<source>MUSCLE align profiles '%1' vs '%2'</source>
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<translation></translation>
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<location filename="../src/MuscleTask.cpp" line="215"/>
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<source>MUSCLE align '%2' by profile '%1'</source>
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<translation></translation>
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<source>input_format_error</source>
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<translation type="obsolete">Can't detect file format</translation>
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<location filename="../src/MuscleTask.cpp" line="272"/>
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<source>Sequences in file have different alphabets %1</source>
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<translation></translation>
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<location filename="../src/MuscleTask.cpp" line="292"/>
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<source>No sequences found in file %1</source>
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<translation></translation>
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<location filename="../src/MuscleTask.cpp" line="294"/>
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<source>No alignment found in file %1</source>
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<translation></translation>
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<name>U2::MuscleAlignDialogController</name>
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<location filename="../src/MuscleAlignDialogController.cpp" line="48"/>
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<source>Error</source>
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<translation></translation>
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<location filename="../src/MuscleAlignDialogController.cpp" line="48"/>
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<source>Illegal alignment region</source>
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<translation></translation>
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<source>Selecting machines error!</source>
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<translation type="obsolete">Selecting machines error!</translation>
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<source>You didn't select a machine to run remote task!</source>
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<translation type="obsolete">You didn't select a machine to run remote task!</translation>
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<source>Distributed run on many machines is not supported yet. Select 1 machine</source>
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<translation type="obsolete">Distributed run on many machines is not supported yet. Select 1 machine</translation>
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<location filename="../src/MuscleAlignDialogController.cpp" line="168"/>
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<source>MUSCLE default</source>
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<translation></translation>
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<location filename="../src/MuscleAlignDialogController.cpp" line="169"/>
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<source><p>The default settings are designed to give the best accuracy</source>
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<translation></translation>
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<location filename="../src/MuscleAlignDialogController.cpp" line="170"/>
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<source><p><b>Command line:</b> muscle <no-parameters></source>
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<translation></translation>
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<location filename="../src/MuscleAlignDialogController.cpp" line="174"/>
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<source>Large alignment</source>
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<translation></translation>
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<location filename="../src/MuscleAlignDialogController.cpp" line="175"/>
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<source><p>If you have a large number of sequences (a few thousand), or they are very long, then the default settings may be too slow for practical use. A good compromise between speed and accuracy is to run just the first two iterations of the algorithm</source>
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<translation></translation>
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<location filename="../src/MuscleAlignDialogController.cpp" line="176"/>
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<source><p><b>Command line:</b> muscle <i>-maxiters 2</i></source>
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<translation></translation>
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<location filename="../src/MuscleAlignDialogController.cpp" line="180"/>
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<source>Refine only</source>
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<translation></translation>
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<location filename="../src/MuscleAlignDialogController.cpp" line="181"/>
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<source><p>Improves existing alignment without complete realignment</source>
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<translation></translation>
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<location filename="../src/MuscleAlignDialogController.cpp" line="182"/>
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<source><p><b>Command line:</b> muscle <i>-refine</i></source>
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<translation></translation>
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<name>U2::MuscleAlignWithExtFileSpecifyDialogController</name>
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<location filename="../src/MuscleAlignDialogController.cpp" line="94"/>
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<source>Select input file</source>
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<translation type="unfinished"></translation>
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<location filename="../src/MuscleAlignDialogController.cpp" line="129"/>
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<source>Error</source>
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<translation type="unfinished"></translation>
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<location filename="../src/MuscleAlignDialogController.cpp" line="129"/>
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<source>Illegal alignment region</source>
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<translation type="unfinished"></translation>
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<name>U2::MuscleGObjectTask</name>
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<location filename="../src/MuscleTask.cpp" line="320"/>
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<source>MUSCLE align '%1'</source>
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<translation></translation>
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<location filename="../src/MuscleTask.cpp" line="323"/>
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<source>MUSCLE refine '%1'</source>
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<translation></translation>
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<location filename="../src/MuscleTask.cpp" line="326"/>
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<source>MUSCLE add to profile '%1'</source>
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<translation></translation>
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<location filename="../src/MuscleTask.cpp" line="329"/>
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<source>MUSCLE align profiles</source>
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<translation></translation>
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<location filename="../src/MuscleTask.cpp" line="344"/>
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<source>object_removed</source>
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<translation>Object was removed</translation>
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<location filename="../src/MuscleTask.cpp" line="348"/>
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<location filename="../src/MuscleTask.cpp" line="371"/>
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<source>object_is_state_locked</source>
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<translation>Object is locked</translation>
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<name>U2::MuscleLocalTask</name>
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<source>Muscle local task</source>
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<translation type="obsolete">Muscle local task</translation>
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<source>No settings given</source>
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<translation type="obsolete">No settings given</translation>
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<source>Muscle local task. Alignment: %1</source>
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<translation type="obsolete">Muscle local task. Alignment: %1</translation>
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<source>Alien Muscle task from remote machine.</source>
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<translation type="obsolete">Alien Muscle task from remote machine.</translation>
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<source>Alignment</source>
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<translation type="obsolete">Alignment</translation>
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<source>Task finished with error</source>
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<translation type="obsolete">Task finished with error</translation>
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<name>U2::MuscleMSAEditorContext</name>
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<location filename="../src/MusclePlugin.cpp" line="122"/>
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<source>Align sequences to profile with MUSCLE</source>
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<translation></translation>
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<location filename="../src/MusclePlugin.cpp" line="129"/>
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<source>Align profile to profile with MUSCLE</source>
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<translation></translation>
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<location filename="../src/MusclePlugin.cpp" line="192"/>
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<source>Select file with sequences</source>
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<translation></translation>
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<location filename="../src/MusclePlugin.cpp" line="209"/>
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<source>Select file with alignment</source>
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<translation></translation>
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<location filename="../src/MusclePlugin.cpp" line="115"/>
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<source>Align with MUSCLE</source>
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<translation></translation>
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<name>U2::MuscleParallelTask</name>
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<location filename="../src/MuscleParallel.cpp" line="28"/>
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<source>MuscleParallelTask</source>
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<translation></translation>
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<name>U2::MusclePlugin</name>
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<location filename="../src/MusclePlugin.cpp" line="36"/>
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<location filename="../src/MusclePlugin.cpp" line="45"/>
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<source>MUSCLE</source>
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<translation></translation>
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<location filename="../src/MusclePlugin.cpp" line="37"/>
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<source>A port of MUSCLE package for multiple sequence alignment. Check http://www.drive5.com/muscle/ for the original version</source>
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<translation></translation>
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<location filename="../src/MusclePlugin.cpp" line="51"/>
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<source>Multiple alignment</source>
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<translation type="unfinished"></translation>
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<name>U2::MusclePrepareTask</name>
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<location filename="../src/MuscleParallel.cpp" line="72"/>
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<source>Internal parallel MUSCLE error: %1</source>
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<translation></translation>
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<location filename="../src/MuscleParallel.cpp" line="112"/>
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<source>No sequences in input file</source>
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<translation></translation>
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<location filename="../src/MuscleParallel.cpp" line="139"/>
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<source>alignment_is_empty</source>
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<translation>Alignment is empty</translation>
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<name>U2::MuscleRemoteToGobjectTask</name>
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<source>Malignment object removed</source>
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<translation type="obsolete">Malignment object removed</translation>
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<source>remote machine settings</source>
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<translation type="obsolete">remote machine settings</translation>
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<source>MAlignment object is state locked</source>
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<translation type="obsolete">MAlignment object is state locked</translation>
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<source>Cannot create remote machine</source>
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<translation type="obsolete">Cannot create remote machine</translation>
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<source>remote task didn't produced result</source>
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<translation type="obsolete">remote task didn't produced result</translation>
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<source>Muscle task runned on remote machine.</source>
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<translation type="obsolete">Muscle task runned on remote machine.</translation>
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<source>Alignment</source>
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<translation type="obsolete">Alignment</translation>
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<source>Task finished with error</source>
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<translation type="obsolete">Task finished with error</translation>
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<name>U2::MuscleSchemaTask</name>
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<location filename="../src/MuscleSchemaTask.cpp" line="15"/>
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<source>MuscleSchemaTask</source>
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<translation type="unfinished"></translation>
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<location filename="../src/MuscleSchemaTask.cpp" line="50"/>
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<source>Unable to create temporary files</source>
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<translation type="unfinished"></translation>
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<name>U2::MuscleTask</name>
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<location filename="../src/MuscleTask.cpp" line="40"/>
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<source>MUSCLE alignment</source>
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<translation></translation>
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<name>U2::MuscleWithExtFileSpecifySupportTask</name>
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<location filename="../src/MuscleTask.cpp" line="407"/>
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<source>input_format_error</source>
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<translation type="unfinished">Can't detect file format</translation>
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<name>U2::ProgressiveAlignTask</name>
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<location filename="../src/MuscleParallel.cpp" line="251"/>
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<source>ProgressiveAlignTask</source>
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<translation></translation>
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<location filename="../src/MuscleParallel.cpp" line="273"/>
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<source>Internal parallel MUSCLE error: %1</source>
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<translation></translation>
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<location filename="../src/MuscleParallel.cpp" line="278"/>
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<source>alignment "%1" Parallel MUSCLE Iter 1 accomplished. Time elapsed %2 ms</source>
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<translation></translation>
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<name>U2::ProgressiveAlignWorker</name>
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<location filename="../src/MuscleParallel.cpp" line="329"/>
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<source>ProgressiveAlignWorker</source>
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<translation></translation>
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<location filename="../src/MuscleParallel.cpp" line="343"/>
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<source>Internal parallel MUSCLE error: %1</source>
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<translation></translation>
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<name>U2::RefineTask</name>
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<location filename="../src/MuscleParallel.cpp" line="503"/>
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<source>RefineTask</source>
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<translation></translation>
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<location filename="../src/MuscleParallel.cpp" line="526"/>
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<source>Internal parallel MUSCLE error: %1</source>
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<translation></translation>
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<name>U2::RefineTreeTask</name>
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<location filename="../src/MuscleParallel.cpp" line="458"/>
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<source>RefineTreeTask</source>
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<translation></translation>
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<location filename="../src/MuscleParallel.cpp" line="470"/>
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<source>Internal parallel MUSCLE error: %1</source>
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<translation></translation>
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<name>U2::RefineWorker</name>
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<location filename="../src/MuscleParallel.cpp" line="579"/>
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<source>Internal parallel MUSCLE error: %1</source>
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<translation></translation>