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Viewing changes to src/corelibs/U2View/src/util_dna_assembly/BuildIndexDialog.cpp

  • Committer: Package Import Robot
  • Author(s): Steffen Moeller
  • Date: 2011-11-02 13:29:07 UTC
  • mfrom: (1.2.1) (3.1.11 natty)
  • Revision ID: package-import@ubuntu.com-20111102132907-o34gwnt0uj5g6hen
Tags: 1.9.8+repack-1
* First release to Debian
  - added README.Debian
  - increased policy version to 3.9.2
  - added URLs for version control system
* Added debug package.

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src/corelibs/U2View/src/util_dna_assembly/BuildIndexDialog.cpp
 
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/**
 
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 * UGENE - Integrated Bioinformatics Tools.
 
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 * Copyright (C) 2008-2011 UniPro <ugene@unipro.ru>
 
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 * http://ugene.unipro.ru
 
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 *
 
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 * This program is free software; you can redistribute it and/or
 
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 * modify it under the terms of the GNU General Public License
 
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 * as published by the Free Software Foundation; either version 2
 
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 * of the License, or (at your option) any later version.
 
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 *
 
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 * This program is distributed in the hope that it will be useful,
 
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 * but WITHOUT ANY WARRANTY; without even the implied warranty of
 
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 * MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the
 
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 * GNU General Public License for more details.
 
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 *
 
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 * You should have received a copy of the GNU General Public License
 
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 * along with this program; if not, write to the Free Software
 
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 * Foundation, Inc., 51 Franklin Street, Fifth Floor, Boston,
 
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 * MA 02110-1301, USA.
 
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 */
 
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#include "BuildIndexDialog.h"
 
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#include "DnaAssemblyGUIExtension.h"
 
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#include <U2Algorithm/DnaAssemblyAlgRegistry.h>
 
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#include <U2Core/GUrlUtils.h>
 
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#include <U2Misc/DialogUtils.h>
 
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#include <U2Core/DocumentUtils.h>
 
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#include <QtGui/QFileDialog>
 
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#include <QtGui/QMessageBox>
 
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namespace U2 {
 
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QString BuildIndexDialog::genomePath;
 
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BuildIndexDialog::BuildIndexDialog(const DnaAssemblyAlgRegistry* registry, QWidget* p)
 
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: QDialog(p), assemblyRegistry(registry), customGUI(NULL)
 
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{
 
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        setupUi(this);
 
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        QStringList names = registry->getRegisteredAlgorithmsWithIndexFileSupport();
 
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        methodNamesBox->addItems(names);
 
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        // TODO: change the way default method is set
 
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        if (names.size() > 0) {
 
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                methodNamesBox->setCurrentIndex(names.size() - 1);
 
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        }
 
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        sl_onAlgorithmChanged(methodNamesBox->currentText());
 
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        connect(setIndexFileNameButton, SIGNAL(clicked()), SLOT(sl_onSetIndexFileNameButtonClicked()));
 
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        connect(addRefButton, SIGNAL(clicked()), SLOT(sl_onAddRefButtonClicked()) );
 
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        connect(methodNamesBox, SIGNAL(currentIndexChanged(const QString &)), SLOT(sl_onAlgorithmChanged(const QString &)));
 
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        if (!genomePath.isEmpty()) {
 
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                refSeqEdit->setText(genomePath);
 
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                buildIndexUrl(genomePath);
 
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        }
 
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}
 
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void BuildIndexDialog::sl_onAddRefButtonClicked() {
 
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        LastOpenDirHelper lod;
 
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        QString filter;
 
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        lod.url = QFileDialog::getOpenFileName(this, tr("Open reference sequence"), lod.dir, filter);
 
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        if (lod.url.isEmpty()) {
 
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                return;
 
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        }
 
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        refSeqEdit->setText(lod.url);
 
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        buildIndexUrl(lod.url);
 
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}
 
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void BuildIndexDialog::sl_onSetIndexFileNameButtonClicked() {
 
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        LastOpenDirHelper lod;
 
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        lod.url = QFileDialog::getSaveFileName(this, tr("Set index file name"), lod.dir);
 
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        if (!lod.url.isEmpty()) {
 
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                GUrl index = lod.url;
 
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                if (index.lastFileSuffix().isEmpty() && customGUI != NULL) {
 
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                        QString extension = customGUI->getIndexFileExtension();
 
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                        if (extension.isEmpty()) {
 
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                                index = QString( "%1" ).arg( index.getURLString() );
 
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                        } else {
 
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                                index = QString( "%1.%2" ).arg( index.getURLString() ).arg(extension);
 
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                        }
 
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                }
 
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                indexFileNameEdit->setText(index.getURLString());
 
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        }
 
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}
 
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void BuildIndexDialog::sl_onAlgorithmChanged(const QString &) {
 
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        updateState();
 
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}
 
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void BuildIndexDialog::updateState() {
 
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        addGuiExtension();
 
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}
 
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void BuildIndexDialog::addGuiExtension() {
 
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        int insertPos = verticalLayout->count() - 2;
 
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        // cleanup previous extension
 
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        if (customGUI != NULL) {
 
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                layout()->removeWidget(customGUI);         
 
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                setMinimumHeight(minimumHeight() - customGUI->minimumHeight());
 
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                delete customGUI;
 
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                customGUI = NULL;
 
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        }
 
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        // insert new extension widget
 
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        DnaAssemblyAlgorithmEnv* env = assemblyRegistry->getAlgorithm(methodNamesBox->currentText());
 
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        if (NULL == env) {
 
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                adjustSize();
 
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                return;
 
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        }
 
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    DnaAssemblyGUIExtensionsFactory* gui = env->getGUIExtFactory();
 
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    if (gui!=NULL && gui->hasBuildIndexWidget()) {
 
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                customGUI = gui->createBuildIndexWidget(this);
 
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                int extensionMinWidth = customGUI->sizeHint().width();
 
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                int extensionMinHeight = customGUI->sizeHint().height();
 
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                customGUI->setMinimumWidth(extensionMinWidth);
 
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                customGUI->setMinimumHeight(extensionMinHeight);
 
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                verticalLayout->insertWidget(insertPos, customGUI);
 
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                // adjust sizes
 
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                setMinimumHeight(customGUI->minimumHeight() + minimumHeight());
 
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                if (minimumWidth() < customGUI->minimumWidth()) {
 
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                        setMinimumWidth(customGUI->minimumWidth());
 
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                }
 
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                if (!refSeqEdit->text().isEmpty()) {
 
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                        buildIndexUrl(refSeqEdit->text());
 
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                }
 
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                customGUI->show();
 
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        } else {
 
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                adjustSize();
 
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        }
 
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}
 
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void BuildIndexDialog::buildIndexUrl(const GUrl& refUrl ) {
 
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        QString extension("");
 
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        if (NULL != customGUI) {
 
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                extension = customGUI->getIndexFileExtension();
 
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        customGUI->buildIndexUrl(refUrl);
 
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        }
 
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        GUrl url;
 
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        if (extension.isEmpty()) {
 
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                url = GUrlUtils::rollFileName(refUrl.dirPath() + "/" + refUrl.baseFileName(), DocumentUtils::getNewDocFileNameExcludesHint());
 
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        } else {
 
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                url = GUrlUtils::rollFileName(refUrl.dirPath() + "/" + refUrl.baseFileName()+ "." + extension, DocumentUtils::getNewDocFileNameExcludesHint());
 
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        }
 
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        indexFileNameEdit->setText(url.getURLString());
 
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}
 
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void BuildIndexDialog::accept()
 
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{
 
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        if (refSeqEdit->text().isEmpty()) {
 
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                QMessageBox::information(this, tr("Build index"), tr("Reference sequence url is not set!") );
 
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        } else if (indexFileNameEdit->text().isEmpty() ) {
 
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                QMessageBox::information(this, tr("Build index"), tr("Index file name is not set!") );
 
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        } else {   
 
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                genomePath.clear();
 
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                genomePath = refSeqEdit->text();
 
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                QDialog::accept();
 
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        }
 
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}
 
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const GUrl BuildIndexDialog::getRefSeqUrl() {
 
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        return refSeqEdit->text();
 
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}
 
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const QString BuildIndexDialog::getAlgorithmName() {
 
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        return methodNamesBox->currentText();
 
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}
 
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const QString BuildIndexDialog::getIndexFileName() {
 
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        return indexFileNameEdit->text();
 
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}
 
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QMap<QString, QVariant> BuildIndexDialog::getCustomSettings() {
 
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        if (customGUI != NULL) {
 
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                return customGUI->getBuildIndexCustomSettings();
 
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        } else {
 
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                return QMap<QString, QVariant>();
 
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        }
 
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}
 
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}//namespace