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Viewing changes to src/plugins/external_tool_support/src/tcoffee/TCoffeeSupportRunDialog.cpp

  • Committer: Package Import Robot
  • Author(s): Steffen Moeller
  • Date: 2011-11-02 13:29:07 UTC
  • mfrom: (1.2.1) (3.1.11 natty)
  • Revision ID: package-import@ubuntu.com-20111102132907-o34gwnt0uj5g6hen
Tags: 1.9.8+repack-1
* First release to Debian
  - added README.Debian
  - increased policy version to 3.9.2
  - added URLs for version control system
* Added debug package.

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src/plugins/external_tool_support/src/tcoffee/TCoffeeSupportRunDialog.cpp
 
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/**
 
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 * UGENE - Integrated Bioinformatics Tools.
 
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 * Copyright (C) 2008-2011 UniPro <ugene@unipro.ru>
 
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 * http://ugene.unipro.ru
 
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 *
 
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 * This program is free software; you can redistribute it and/or
 
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 * modify it under the terms of the GNU General Public License
 
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 * as published by the Free Software Foundation; either version 2
 
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 * of the License, or (at your option) any later version.
 
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 *
 
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 * This program is distributed in the hope that it will be useful,
 
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 * but WITHOUT ANY WARRANTY; without even the implied warranty of
 
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 * MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the
 
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 * GNU General Public License for more details.
 
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 *
 
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 * You should have received a copy of the GNU General Public License
 
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 * along with this program; if not, write to the Free Software
 
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 * Foundation, Inc., 51 Franklin Street, Fifth Floor, Boston,
 
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 * MA 02110-1301, USA.
 
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 */
 
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#include "TCoffeeSupportRunDialog.h"
 
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#include <U2Misc/DialogUtils.h>
 
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#include <QtGui/QFileDialog>
 
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#include <QtGui/QToolButton>
 
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namespace U2 {
 
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////////////////////////////////////////
 
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//TCoffeeSupportRunDialog
 
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TCoffeeSupportRunDialog::TCoffeeSupportRunDialog(TCoffeeSupportTaskSettings& _settings, QWidget* _parent) :
 
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        QDialog(_parent), settings(_settings)
 
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{
 
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    setupUi(this);
 
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    connect(this->cancelButton,SIGNAL(clicked()),this,SLOT(reject()));
 
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    connect(this->alignButton,SIGNAL(clicked()),this,SLOT(sl_align()));
 
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}
 
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void TCoffeeSupportRunDialog::sl_align(){
 
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    if(gapOpenCheckBox->isChecked()) {
 
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        settings.gapOpenPenalty = gapOpenSpinBox->value();
 
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    }
 
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    if(gapExtCheckBox->isChecked()) {
 
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        settings.gapExtenstionPenalty = gapExtSpinBox->value();
 
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    }
 
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    if(maxNumberIterRefinementCheckBox->isChecked()){
 
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        settings.numIterations = maxNumberIterRefinementSpinBox->value();
 
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    }
 
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    accept();
 
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}
 
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////////////////////////////////////////
 
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//TCoffeeWithExtFileSpecifySupportRunDialog
 
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TCoffeeWithExtFileSpecifySupportRunDialog::TCoffeeWithExtFileSpecifySupportRunDialog(TCoffeeSupportTaskSettings& _settings, QWidget* _parent) :
 
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        QDialog(_parent), settings(_settings)
 
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{
 
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    setupUi(this);
 
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    QWidget * widget = new QWidget(_parent);
 
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    inputFileLineEdit= new FileLineEdit(DialogUtils::prepareDocumentsFileFilterByObjType(GObjectTypes::MULTIPLE_ALIGNMENT, true),
 
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        "", false, widget);
 
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    inputFileLineEdit->setText("");
 
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    QToolButton * selectToolPathButton = new QToolButton(widget);
 
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    selectToolPathButton->setVisible(true);
 
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    selectToolPathButton->setText("...");
 
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    connect(selectToolPathButton, SIGNAL(clicked()), inputFileLineEdit, SLOT(sl_onBrowse()));
 
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    connect(inputFileLineEdit,SIGNAL(textChanged(QString)),this, SLOT(sl_inputFileLineEditChanged(QString)));
 
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    QHBoxLayout* layout = new QHBoxLayout(widget);
 
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    layout->addWidget(inputFileLineEdit);
 
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    layout->addWidget(selectToolPathButton);
 
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    QGroupBox* inputFileGroupBox=new QGroupBox(tr("Select input file"),widget);
 
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    inputFileGroupBox->setLayout(layout);
 
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    QBoxLayout* parentLayout = qobject_cast<QBoxLayout*>(this->layout());
 
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    assert(parentLayout);
 
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    parentLayout->insertWidget(0, inputFileGroupBox);
 
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    alignButton->setEnabled(false);
 
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    connect(this->cancelButton, SIGNAL(clicked()), this, SLOT(reject()));
 
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    connect(this->alignButton, SIGNAL(clicked()), this, SLOT(sl_align()));
 
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}
 
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void TCoffeeWithExtFileSpecifySupportRunDialog::sl_inputFileLineEditChanged(const QString& str){
 
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    alignButton->setEnabled(!str.isEmpty());
 
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}
 
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void TCoffeeWithExtFileSpecifySupportRunDialog::sl_align(){
 
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    if(gapOpenCheckBox->isChecked()) {
 
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        settings.gapOpenPenalty = gapOpenSpinBox->value();
 
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    }
 
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    if(gapExtCheckBox->isChecked()) {
 
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        settings.gapExtenstionPenalty = gapExtSpinBox->value();
 
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    }
 
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    if(maxNumberIterRefinementCheckBox->isChecked()){
 
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        settings.numIterations = maxNumberIterRefinementSpinBox->value();
 
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    }
 
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    if(!inputFileLineEdit->text().isEmpty()){
 
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        settings.inputFilePath=inputFileLineEdit->text();
 
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    }else{
 
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        assert(NULL);
 
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        reject();
 
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    }
 
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    accept();
 
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}
 
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}//namespace