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# by Arne Boeckmann (2013)
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# force gcc (hack to fix cent5 build)
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MAFFTDIR=mafft-7.055-with-extensions
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SCRIPTDIR=$(MAFFTDIR)/scripts
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BINDIR=$(MAFFTDIR)/binaries
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# ARBs standard target
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$(MAIN) : $(SCRIPTDIR) $(BINDIR)
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+cd $(MAFFTDIR)/core && make clean
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+cd $(MAFFTDIR)/extensions && make clean
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rm -rf $(ARBHOME)/lib/mafft
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rm -f $(ARBHOME)/bin/mafft*
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clean: clean_core clean_extensions clean_here clean_dirs
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+cd $(MAFFTDIR)/core && make && make install
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+cd $(MAFFTDIR)/extensions && make && make install
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mafft.stamp: make_core make_extensions
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.PHONY : clean clean_core clean_extensions clean_here make_core make_extensions