[ Andreas Tille ] * New upstream version Closes: #741890 * debian/upstream -> debian/upstream/metadata * debian/control: - Build-Depends: added libglib2.0-dev - Depends: added mafft, mrbayes * debian/rules - Add explicite --remove-section=.comment option to manual strip call * cme fix dpkg-control * arb-common.dirs: Do not create unneeded lintian dir * Add turkish debconf translation (thanks for the patch to Mert Dirik <mertdirik@gmail.com>) Closes: #757497
[ Elmar Pruesse ] * patches removed: - 10_config.makefiles.patch, 80_no_GL.patch removed in favor of creating file from config.makefile.template via sed in debian/control - 20_Makefile_main.patch merged upstream - 21_Makefiles.patch no longer needed - 30_tmpfile_CVE-2008-5378.patch: merged upstream - 50_fix_gcc-4.8.patch: merged upstream - 40_add_libGLU.patch: libGLU not needed for arb_ntree) - 60_use_debian_packaged_raxml.patch: merged upstream - 70_hardening.patch merged upstream - 72_add_math_lib_to_linker.patch does not appear to be needed * patches added: - 10_upstream_r12793__show_db_load_progress: backported patch showing progress while ARB is loading a database (needed as indicator/splash screen while ARB is launching) - 20_upstream_r12794__socket_permissions: backported security fix - 30_upstream_r12814__desktop_keywords: backported add keywords to desktop (fixes lintian warning) - 40_upstream_r12815__lintian_spelling: backported fix for lintian reported spelling errors - 50_private_nameservers change configuration to put nameservers into users home dirs (avoids need for shared writeable directory) - 60_use_debian_phyml use phyml from debian package for both interfaces in ARB * debian/rules: - create config.makefile from override_dh_configure target - use "make tarfile" in override_dh_install - remove extra cleaning not needed for ARB 6 - use "dh_install --list-missing" to avoid missing files - added override_dh_fixperms target * debian/control: - added libarb-dev package - Depends: added phyml, xdg-utils - Suggests: removed phyml - fix lintian duplicate-short-description (new descriptions) * debian/*.install: - "unrolled" confusing globbing to select files - pick files from debian/tmp - moved all config files to /etc/arb * debian/arb-common.templates: updated * scripts: - removed arb-add-pt-server - launch-wrapper: - only add demo.arb to newly created $ARBUSERDATA - pass commandline arguments through bin/arb wrapper - preinst: removing old PT server index files on upgrade from 5.5* - postinst: set setgid on shared PT dir * rewrote arb.1 manfile * added file icon for ARB databases * using upstream arb_tcp.dat