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# Hypertext links in helptext can be added like this: LINK{ref.hlp|http://add|bla@domain}
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#************* Title of helpfile !! and start of real helpfile ********
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TITLE Frequently Asked Questions
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QUESTION I have no tree. How can I get one ??
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ANSWER See LINK{no_tree.hlp}
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QUESTION When I'm using the Phylip tools for building trees, the program skips over
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the Phylip menu (except in ARB_NT, Phylip Distance Methods). It is,
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therefore, not possible to use the Phylip options, e.g. to select an
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outgroup when doing bootstrap analysis.
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ANSWER There is a second menu-button in the tree-build sub-menu which starts
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the original phylip programs with interactive access to all parameters.
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QUESTION It would be nice to be able to close a database without having to exit ARB.
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ANSWER Sorry, that would be to complicated to program.
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QUESTION Finally, do you have a 23S alignment, that I could use? I have tried to
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build my own, based on the sequences available from RDP. But that's only 34
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sequences, and when I align my own 23S sequences against those, the computer
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runs out of memory. I hope this problem can be solved by putting some more
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memory in the computer (I currently have 64 mb RAM and I'm going to double
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that). The shorter 16S sequences causes no problems. Anyway, I would be
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thankfull if a 23S alignment could be made available.
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ANSWER Wolfgang Ludwig has a 23s alignment with 500 Sequences. I will ask
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him to give it to me and you.
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QUESTION When I try to start the aligner V1.0 or V2.0 I get a message:
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libARBDB.so.2 not found, Aligner failed
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ANSWER You are probably using the LINUX operating system and have not
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installed arb under root account. Please login as root and run
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the arb_install program again, but don't update the old package.
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NOTE Please also take a look at our Web-FAQ at LINK{http://www.arb-home.de/}
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TITLE FAQ: Frequently Asked Questions
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SECTION I have no tree. How can I get one ??
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SECTION When I'm using the Phylip tools for building trees, I cannot access the Phylip menu.
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There is a second menu-button in the tree-build sub-menu which starts
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the original phylip programs with interactive access to all parameters.
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SECTION It would be nice to be able to close a database without having to exit ARB
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Use 'File/Quit + load other database'
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NOTE Please also take a look at our Web-FAQ at LINK{http://www.arb-home.de/}