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  • Committer: Package Import Robot
  • Author(s): Elmar Pruesse, Andreas Tille, Elmar Pruesse
  • Date: 2014-09-02 15:15:06 UTC
  • mfrom: (1.1.6)
  • Revision ID: package-import@ubuntu.com-20140902151506-jihq58b3iz342wif
Tags: 6.0.2-1
http://bugs.debian.org/741890
http://bugs.debian.org/757497
[ Andreas Tille ]
* New upstream version
  Closes: #741890
* debian/upstream -> debian/upstream/metadata
* debian/control:
   - Build-Depends: added libglib2.0-dev
   - Depends: added mafft, mrbayes
* debian/rules
   - Add explicite --remove-section=.comment option to manual strip call
* cme fix dpkg-control
* arb-common.dirs: Do not create unneeded lintian dir
* Add turkish debconf translation (thanks for the patch to Mert Dirik
  <mertdirik@gmail.com>)
  Closes: #757497

[ Elmar Pruesse ]
* patches removed:
   - 10_config.makefiles.patch,
     80_no_GL.patch
       removed in favor of creating file from config.makefile.template via 
       sed in debian/control
   - 20_Makefile_main.patch
       merged upstream
   - 21_Makefiles.patch
       no longer needed
   - 30_tmpfile_CVE-2008-5378.patch: 
       merged upstream
   - 50_fix_gcc-4.8.patch:
       merged upstream
   - 40_add_libGLU.patch:
       libGLU not needed for arb_ntree)
   - 60_use_debian_packaged_raxml.patch:
       merged upstream
   - 70_hardening.patch
       merged upstream
   - 72_add_math_lib_to_linker.patch
       does not appear to be needed
* patches added:
   - 10_upstream_r12793__show_db_load_progress:
       backported patch showing progress while ARB is loading a database
       (needed as indicator/splash screen while ARB is launching)
   - 20_upstream_r12794__socket_permissions:
       backported security fix
   - 30_upstream_r12814__desktop_keywords:
       backported add keywords to desktop (fixes lintian warning)
   - 40_upstream_r12815__lintian_spelling:
       backported fix for lintian reported spelling errors
   - 50_private_nameservers
       change configuration to put nameservers into users home dirs
       (avoids need for shared writeable directory)
   - 60_use_debian_phyml
       use phyml from debian package for both interfaces in ARB
* debian/rules:
   - create config.makefile from override_dh_configure target
   - use "make tarfile" in override_dh_install
   - remove extra cleaning not needed for ARB 6
   - use "dh_install --list-missing" to avoid missing files
   - added override_dh_fixperms target
* debian/control:
   - added libarb-dev package
   - Depends: added phyml, xdg-utils
   - Suggests: removed phyml
   - fix lintian duplicate-short-description (new descriptions)
* debian/*.install:
   - "unrolled" confusing globbing to select files
   - pick files from debian/tmp
   - moved all config files to /etc/arb
* debian/arb-common.templates: updated
* scripts:
   - removed arb-add-pt-server
   - launch-wrapper: 
     - only add demo.arb to newly created $ARBUSERDATA
     - pass commandline arguments through bin/arb wrapper
   - preinst: removing old PT server index files on upgrade from 5.5*
   - postinst: set setgid on shared PT dir
* rewrote arb.1 manfile
* added file icon for ARB databases
* using upstream arb_tcp.dat

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Lines of Context:
UNIT_TESTER/run/TEST_prot.arb
 
1
/*ARBDB ASCII*/
 
2
species_data            %% (%
 
3
        species         :5000   %% (%
 
4
                name            :7600   "CytLyti6"
 
5
                flag            :7000   "m"
 
6
                full_name               "Cytophaga lytica"
 
7
                short_name              "C. lytica"
 
8
                ali_tuf_pro     :5000   %% (%
 
9
                        data            :7500   "MAKETFDRSKPHLNIGTIGHVDHGKTTLTAAITTVL---------------ANAGLSE---LRSF-DSIDNAPEEKERGITINTSHVEYSTANRHYAHVDCPGHADYVKNMVTGAAQMDGAILVVAATDG----PM---PQTREHILLGRQVGIPRIVVFLNKVDMVDDE---ELLELVEMEVRELLSFYEYDGDNGPVVSGSALGALN-----GEQKWVDT-----------VMELMEAVDNWIELPKRDVDKDFLMPVEDVFTITGRGTVATGRIETGVANTGDAVDIIGMGADKLASTITGVEMFRKILDRGEAGDNVGILLRGIEKSQISRGMVICKPGSVKPHS--KFEAEVYILKK--EEGGRHTPFHNNYRPQFYVRTTDVTGTI------SLPSGVEMVMPGDNLTITVELLSPIA---LSEGLR---FAIREGGRTVGAGQVTKIIE-----------------"
 
10
                        %) /*ali_tuf_pro*/
 
11
 
 
12
                ali_tuf_dna     :5000   %% (%
 
13
                        data            :7500   "ATGGCAAAGGAAACTTTTGATCGTTCCAAACCGCACTTAAATATAGGTACTATTGGACACGTAGATCACGGTAAAACTACTTTAACTGCTGCTATTACAACAGTATTG---------------------------------------------GCAAATGCAGGTCTTTCTGAA---------TTAAGAAGTTTC---GATTCTATCGATAACGCTCCAGAAGAAAAAGAAAGAGGTATAACAATTAATACTTCTCACGTAGAGTATTCAACTGCAAACCGTCACTATGCACACGTAGATTGTCCAGGTCACGCGGATTACGTTAAGAACATGGTAACTGGTGCTGCTCAGATGGATGGTGCTATTTTGGTAGTTGCTGCAACTGATGGT------------CCAATG---------CCTCAAACACGTGAGCACATCTTATTAGGTCGTCAGGTAGGTATTCCAAGAATCGTTGTTTTCTTAAACAAGGTTGATATGGTTGATGATGAA---------GAGCTTTTAGAGCTTGTTGAAATGGAAGTTAGAGAATTACTTTCTTTTTACGAGTATGATGGTGATAATGGTCCTGTTGTTTCTGGTTCTGCTTTAGGTGCACTTAAT---------------GGTGAGCAAAAATGGGTAGATACA---------------------------------GTAATGGAATTGATGGAGGCTGTTGATAACTGGATCGAATTACCAAAGCGTGATGTAGATAAGGATTTCTTAATGCCTGTAGAGGATGTATTTACAATTACAGGTCGTGGAACAGTTGCAACTGGTCGTATTGAAACTGGTGTTGCTAATACAGGTGATGCTGTTGATATCATTGGTATGGGTGCTGATAAATTAGCTTCTACTATTACTGGTGTTGAAATGTTCCGTAAGATATTAGATAGAGGTGAAGCTGGTGATAACGTAGGTATCTTATTAAGAGGTATTGAAAAGTCTCAAATCAGTAGAGGTATGGTAATCTGTAAGCCAGGTTCTGTTAAGCCACACTCT------AAGTTTGAAGCTGAGGTTTATATCTTGAAAAAA------GAAGAAGGTGGTCGTCACACACCATTCCATAATAACTACCGTCCACAGTTTTACGTAAGAACAACGGATGTAACAGGAACTATT------------------AGTCTTCCTTCAGGAGTTGAAATGGTTATGCCTGGTGATAACTTAACTATTACAGTAGAATTATTATCTCCTATTGCA---------CTTAGTGAAGGTTTACGT---------TTTGCAATCCGTGAGGGTGGTAGAACAGTAGGTGCTGGTCAGGTAACTAAGATCATAGAA---------------------------------------------------......."
 
14
                        %) /*ali_tuf_dna*/
 
15
 
 
16
                strain                  "DSM 2039"
 
17
                aacid                   "395 "
 
18
                acc                     "ARB_6B3852E"
 
19
                tmp                     "397 "
 
20
                status                  "sorted"
 
21
                aa                      "395 "
 
22
                exclude                 "double entry"
 
23
                aa_pro                  "395 "
 
24
                %) /*species*/
 
25
 
 
26
        species         :5000   %% (%
 
27
                name            :7600   "TaxOcell"
 
28
                flag            :7000   "m"
 
29
                full_name               "Taxeobacter ocellatus"
 
30
                short_name              "T. ocellatus"
 
31
                ali_tuf_pro     :5000   %% (%
 
32
                        data            :7500   "MAKETFDRSKPHVNIGTIGHVDHGKTTLTAAITTVL---------------ANKGLAA---KRDF-SSIDNAPEEKERGITINTAHVEYSTANRHYAHVDCPGHADYVKNMVTGAAQMDGAILVVAATDG----PM---PQTREHILLARQVGVPQLVVFMNKVDMVDDP---ELLELVEMEIRELLSFYDFDGDNIPVVQGSALGGLN-----GDAKWVGT-----------IEQLMDSVDNWIPIPPRLTDQPFLMPVEDVFSITGRGTVATGRIERGVINSGEPVEILGMGAENLKSTVTGVEMFRKILDRGEAGDNVGLLLRGIEKEAIRRGMVICKPGSVTPHK--KFKAEVYVLSK--EEGGRHTPFFNNYRPQFYFRTTDVTGII------SLAEGVEMVMPGDNVTISVELINAVA---MEKGLR---FAIREGGRTVGAGQVTEILD-----------------"
 
33
                        %) /*ali_tuf_pro*/
 
34
 
 
35
                ali_tuf_dna     :5000   %% (%
 
36
                        data            :7500   "ATGGCTAAAGAAACTTTTGACCGGTCCAAGCCGCACGTAAACATCGGCACGATCGGTCACGTGGACCACGGCAAAACGACTCTGACCGCTGCTATCACCACGGTGCTG---------------------------------------------GCTAACAAAGGTCTGGCCGCT---------AAGCGTGACTTC---TCCTCGATCGACAACGCTCCGGAGGAAAAAGAGCGCGGTATCACCATCAACACCGCTCACGTTGAGTACTCGACCGCTAATCGTCACTACGCTCACGTTGACTGCCCTGGTCACGCTGACTACGTGAAGAACATGGTAACCGGTGCTGCTCAAATGGACGGTGCTATCCTCGTGGTAGCTGCTACCGACGGG------------CCGATG---------CCCCAGACCCGTGAGCACATCCTGCTGGCTCGCCAGGTAGGTGTACCGCAGCTGGTTGTGTTCATGAACAAAGTGGACATGGTGGACGACCCC---------GAGCTGCTCGAACTCGTTGAGATGGAAATCCGCGAGCTGCTGTCGTTCTACGACTTCGACGGTGACAACATCCCGGTAGTGCAAGGTTCGGCTCTCGGCGGCCTGAAC---------------GGCGACGCCAAGTGGGTAGGCACC---------------------------------ATCGAGCAACTGATGGACTCGGTTGACAACTGGATTCCGATTCCCCCGCGTCTGACGGACCAGCCGTTCCTGATGCCGGTAGAAGACGTGTTCTCGATTACCGGCCGTGGCACCGTAGCTACGGGTCGTATCGAGCGCGGCGTAATCAACTCGGGTGAGCCGGTTGAAATCCTCGGTATGGGTGCTGAAAACCTCAAGTCGACCGTAACGGGCGTTGAGATGTTCCGCAAGATCCTTGACCGTGGCGAAGCTGGTGACAACGTAGGTCTGCTGCTCCGTGGTATTGAAAAAGAAGCCATCCGTCGCGGCATGGTTATCTGCAAACCTGGCTCGGTAACCCCCCACAAA------AAGTTCAAGGCTGAAGTTTACGTTCTGTCGAAG------GAAGAAGGTGGCCGTCACACGCCGTTCTTCAACAACTACCGTCCGCAGTTCTACTTCCGCACCACCGACGTTACCGGTATTATC------------------TCGCTGGCTGAAGGCGTAGAAATGGTAATGCCCGGCGACAACGTGACCATCTCGGTTGAGCTGATCAACGCTGTAGCT---------ATGGAGAAAGGCCTGCGC---------TTCGCTATCCGCGAAGGTGGCCGCACGGTAGGTGCCGGTCAGGTAACCGAAATCCTCGAC---------------------------------------------------......."
 
37
                        %) /*ali_tuf_dna*/
 
38
 
 
39
                strain                  "Myx 2105"
 
40
                aacid                   "395 "
 
41
                acc                     "ARB_21595EF"
 
42
                tmp                     "397 "
 
43
                status                  "sorted"
 
44
                aa                      "395 "
 
45
                exclude                 "double entry"
 
46
                aa_pro                  "395 "
 
47
                %) /*species*/
 
48
 
 
49
        species         :5000   %% (%
 
50
                name            :7600   "BctFra12"
 
51
                flag            :7000   "h"
 
52
                full_name               "Bacteroides fragilis"
 
53
                short_name              "B. fragilis"
 
54
                ali_tuf_pro     :5000   %% (%
 
55
                        data            :7500   "MAKEKFERTKPHVNIGTIGHVDHGKTTLTAAITTVL---------------AKKGLSE---LRS-FDSIDNAPEEKERGITINTSHVEYETANRHYAHVDCPGHADYVKNMVTGAAQMDGAIIVVAATDG----PM---PQTREHILLARQVNVPKLVVFMNKCDMVEDA---EMLELVEMEMRELLSFYDFDGDNTPIIQGSALGALN-----GVEKWEDK-----------VMELMEAVDTWIPLPPRDVDKPFLMPVEDVFSITGRGTVATGRIETGVIHVGDEIEILGLGED-KKSVVTGVEMFRKLLDQGEAGDNVGLLLRGVDKNEIKRGMVLCKPGQIKPHS--KFKAEVYILKK--EEGGRHTPFHNKYRPQFYLRTMDCTGEI------TLPEGTEMVMPGDNVTITVELIYPVA---LNIGLR---FAIREGGRTVGAGQITEIID-----------------"
 
56
                        %) /*ali_tuf_pro*/
 
57
 
 
58
                ali_tuf_dna     :5000   %% (%
 
59
                        data            :7500   "ATGGCTAAAGAGAAATTTGAACGTACCAAACCGCACGTAAACATTGGTACAATCGGTCACGTTGACCACGGTAAAACCACTTTGACTGCTGCTATCACTACTGTGTTG---------------------------------------------GCAAAGAAAGGTCTTTCTGAA---------CTTCGTTCT---TTCGATTCTATCGATAATGCTCCTGAAGAAAAAGAAAGAGGTATTACTATCAATACTTCACACGTTGAGTATGAAACTGCTAACCGTCACTACGCACACGTTGACTGTCCGGGTCACGCTGACTACGTAAAGAACATGGTTACTGGTGCTGCTCAGATGGACGGTGCTATCATTGTAGTTGCTGCTACTGATGGT------------CCGATG---------CCTCAGACTCGTGAGCACATCCTTTTGGCTCGTCAGGTAAACGTTCCGAAGCTGGTTGTATTCATGAACAAGTGCGATATGGTTGAAGATGCT---------GAGATGTTGGAACTTGTTGAAATGGAAATGAGAGAATTGCTTTCATTCTATGATTTCGACGGTGACAATACTCCGATCATTCAGGGTTCTGCTCTTGGTGCATTGAAC---------------GGCGTAGAAAAATGGGAAGACAAA---------------------------------GTAATGGAACTGATGGAAGCTGTTGATACTTGGATTCCACTGCCTCCGCGCGATGTTGATAAACCTTTCTTGATGCCGGTAGAAGACGTGTTCTCTATCACAGGTCGTGGTACTGTAGCTACAGGTCGTATCGAAACTGGTGTTATCCATGTAGGTGATGAAATCGAAATCCTCGGTTTGGGTGAAGAT---AAGAAATCAGTTGTAACAGGTGTTGAAATGTTCCGCAAACTTCTGGATCAGGGTGAAGCTGGTGACAACGTAGGTCTGTTGCTTCGTGGTGTTGACAAGAACGAAATCAAACGTGGTATGGTTCTTTGTAAACCGGGTCAGATTAAACCTCACTCT------AAATTCAAAGCAGAGGTTTATATCCTGAAGAAA------GAAGAAGGTGGTCGTCACACTCCATTCCATAACAAATATCGTCCTCAGTTCTACCTGCGTACTATGGACTGTACAGGTGAAATC------------------ACTCTTCCGGAAGGAACTGAAATGGTAATGCCGGGTGATAACGTAACTATCACTGTAGAGTTGATCTATCCGGTTGCA---------CTGAACATCGGTCTTCGT---------TTCGCTATCCGCGAAGGTGGACGTACAGTAGGTGCTGGTCAGATTACTGAAATTATCGAC---------------------------------------------------......."
 
60
                        %) /*ali_tuf_dna*/
 
61
 
 
62
                aacid                   "394 "
 
63
                acc                     "ARB_4560B41C"
 
64
                tmp                     "396 "
 
65
                status                  "sorted"
 
66
                aa                      "394 "
 
67
                aa_pro                  "394 "
 
68
                %) /*species*/
 
69
 
 
70
        species         :5000   %% (%
 
71
                name            :7600   "StrRamo3"
 
72
                flag            :7000   "h"
 
73
                ali_tuf_pro     :5000   %% (%
 
74
                        data            :7500   "MSKTAYVRTKPHLNIGTMGHVDHGKTTLTAAITKVL---------------AERGSGT---FVP-FDRIDRAPEEAARGITINIAHVEYETDTRHYAHVDMPGHADYVKNMVTGAAQLDGAILVVSALDG----IM---PQTAEHVLLARQVGVDHIVVALNKADA-GDE---ELTDLVELEVRDLLSEHGYGGDGAPVVRVSGLKALE-----GDPKWTAS-----------IEALLDAVDTYVPMPERYVDAPFLLPVENVLTITGRGTVVTGAVERGTVRVGNRVEVLGAGLE---TVVTGLETFGKPMDEAQAGDNVALLLRGVPRDAVRRGHVVAAPGSVVPRS--RFSAQVYVLSA--REGGRTTPVTSGYRPQFYIRTADVVGDV------DLGEV-GVARPGETVSMIVELGREVP---LEPGLG---FAIREGGRTVGAGTVTALV------------------"
 
75
                        %) /*ali_tuf_pro*/
 
76
 
 
77
                ali_tuf_dna     :5000   %% (%
 
78
                        data            :7500   "ATGTCCAAGACGGCATACGTGCGCACCAAACCGCATCTGAACATCGGCACGATGGGTCATGTCGACCACGGCAAGACCACGTTGACCGCCGCCATCACCAAGGTCCTC---------------------------------------------GCCGAGCGTGGCTCCGGGACG---------TTCGTCCCG---TTCGACCGCATCGACCGGGCCCCGGAGGAGGCCGCGCGCGGCATCACCATCAACATCGCGCACGTCGAGTACGAGACCGACACCCGGCACTACGCGCACGTCGACATGCCGGGCCACGCCGACTACGTCAAGAACATGGTCACCGGCGCCGCGCAGCTCGACGGGGCGATCCTCGTCGTCTCCGCGCTCGACGGG------------ATCATG---------CCGCAGACCGCCGAACACGTCCTGCTCGCCCGGCAGGTGGGCGTCGACCACATCGTCGTCGCCCTCAACAAGGCCGACGCG---GGCGACGAG---------GAGCTCACCGACCTCGTCGAGCTGGAGGTCCGCGATCTGCTCTCCGAGCACGGCTACGGCGGCGACGGTGCCCCCGTCGTACGGGTCTCGGGGCTGAAGGCGCTGGAG---------------GGCGACCCCAAGTGGACGGCGTCC---------------------------------ATCGAGGCGCTGCTCGACGCGGTGGACACCTACGTGCCGATGCCGGAGCGGTATGTGGACGCGCCGTTCCTGCTGCCCGTGGAGAACGTGCTCACCATCACCGGTCGGGGGACCGTGGTCACCGGAGCCGTCGAGCGGGGCACCGTGCGCGTGGGCAACCGGGTCGAAGTGCTCGGCGCCGGGCTGGAG---------ACCGTGGTCACCGGCCTGGAGACGTTCGGCAAGCCCATGGACGAGGCGCAGGCCGGGGACAACGTGGCGCTGTTGCTGCGTGGGGTTCCGCGGGACGCCGTACGGCGTGGGCATGTGGTCGCGGCGCCGGGGAGCGTGGTGCCCCGGAGT------CGATTCTCCGCGCAGGTGTATGTGCTCTCGGCC------CGCGAGGGCGGTCGTACGACTCCTGTCACCAGCGGGTATCGGCCGCAGTTCTACATCCGTACGGCGGATGTGGTGGGGGACGTC------------------GACCTGGGGGAGGTG---GGGGTCGCTCGGCCTGGGGAGACGGTTTCGATGATCGTCGAGTTGGGCCGGGAGGTTCCG---------CTGGAGCCCGGGTTGGGG---------TTCGCCATTCGTGAGGGCGGCAGGACCGTGGGGGCGGGGACCGTTACGGCCCTTGTG------------------------------------------------------......."
 
79
                        %) /*ali_tuf_dna*/
 
80
 
 
81
                full_name               "Streptomyces ramocissimus"
 
82
                aacid                   "389 "
 
83
                acc                     "ARB_30F12BA8"
 
84
                tmp                     "392 "
 
85
                aa                      "389 "
 
86
                aa_pro                  "389 "
 
87
                %) /*species*/
 
88
 
 
89
        species         :5000   %% (%
 
90
                name            :7600   "StrCoel9"
 
91
                file                    "[EBI] sctiuf3.em_ba"
 
92
                gcg_id                  "SCTIUF3"
 
93
                acc                     "X77040"
 
94
                date                    "[EBI] 14-JAN-1994 (Rel. 38, Created) 15-MAY-1995 (Rel. 43, Last updated, Version 8)"
 
95
                full_name               "Streptomyces coelicolor"
 
96
                tax                     "[EBI] Eubacteria; Firmicutes; Actinomycetes; Streptomycetes; Streptomycetaceae; Streptomyces."
 
97
                author                  "[EBI] van Wezel G.P., Woudt L.P., Vervenne R., Verdurmen M.L., Vijgenboom E., Bosch L. van Wezel G.P."
 
98
                title                   "[EBI] Cloning and sequencing of the tuf genes of Streptomyces coelicolor A3(2)."
 
99
                journal                 "[EBI] Biochim. Biophys. Acta 1219:543-547(1994). Submitted (05-JAN-1994) to the EMBL/GenBank/DDBJ databases. G.P. Van Wezel, Leiden Uni., Dep. of Biochemistry, PO Box 9502, 2300 RA Leiden, NETHERLANDS"
 
100
                strain                  "[EBI] M145"
 
101
                ali_tuf_dna     :5000   %% (%
 
102
                        data            :7500   "ATGTCCAAGACGGCGTACGTCCGCACCAAACCGCATCTGAACATCGGCACGATGGGCCATGTCGACCACGGCAAGACCACCCTGACCGCCGCCATCACCAAGGTCCTC---------------------------------------------GCCGAGCGCGGGGCCGGCAGCACCACCCAGTACGTTTCG---TTCGACCGCATCGACCGCGCCCCGGAGGAGGCGGCGCGCGGCATCACCATCAACATCGCGCACGTCGAGTACGAAACCGACACCCGGCACTACGCCCACGTCGACATGCCCGGCCACGCCGACTACGTCAAGAACATGGTCACCGGCGCCGCCCAGCTCGACGGGGCGATCCTCGTCGTATCCGCGCTGGACGGG------------ATCATG---------CCGCAGACCGCCGAACACGTGCTGCTCGCCCGGCAGGTGGGCGTCGACCACATCGTGGTCGCGCTCAACAAGGCCGACGCG---GGTGACGAG---------GAGCTGACCGACCTGGTCGAGCTGGAGGTGCGCGAACTGCTCACCGCGCACGGCTACGGCGGCGACGCCGTGCCCGTCGTACGGGTCTCGGGGCTGAAGGCCCTGGAG---------------GGCGACCCGCGGTGGACGGCCTCC---------------------------------GTCGAGGCGCTGCTCGACGCCGTGGACACGTACGTGCCCATGCCCGAGCGGTACCTGGACGCGCCGTTCCTGCTGCCGGTGGAGAACGTGCTCACCATCACCGGCCGCGGCACCGTCGTCACCGGCGCCGTCGAGCCGGGCACCGTGCGCGTCGGCGACCGGGTCGAGGTGCTCGGGGCGTCCGTCGAG---------ACGGTCGTCACCGGCCTGGAGACCTTCGGCAAGCCGATGGAGGAGGCGCAGGCCGGGGACAACGTGGCGCTGCTGCTGCGCGGGGTCGCCCGCGACACGGTGCGCCGCGGGCAGGTGGTCGCCGCACCCGGCAGCGTCGTCCCCGCGCGG------CGTTTCCGGGCCCGGGTGTACGTGCTCTCGGCG------CGCGAGGGCGGGCGCTCGACACCGCTCACCACCGGATACCGGCCGCAGTTCTACATCCGCACCGCCGACGTGGTCGGCGACGTG------------------GACCTCGGCGAGGAG---GCCGTCGCCCGGCCCGGGGACACCGTCACCATGACGGTCGAGCTGGGACGGGACGTGCCG---------CTGGAGACGGGGCTCGGC---------TTCGCGATCCGCGAGGGCGGTCGCACCGTGGGGGCGGGGACCGTGACCGCGGTGGAG------------------------------------------------------......."
 
103
                        %) /*ali_tuf_dna*/
 
104
 
 
105
                ali_tuf_pro     :5000   %% (%
 
106
                        data            :7500   "MSKTAYVRTKPHLNIGTMGHVDHGKTTLTAAITKVL---------------AERGAGSTTQYVS-FDRIDRAPEEAARGITINIAHVEYETDTRHYAHVDMPGHADYVKNMVTGAAQLDGAILVVSALDG----IM---PQTAEHVLLARQVGVDHIVVALNKADA-GDE---ELTDLVELEVRELLTAHGYGGDAVPVVRVSGLKALE-----GDPRWTAS-----------VEALLDAVDTYVPMPERYLDAPFLLPVENVLTITGRGTVVTGAVEPGTVRVGDRVEVLGASVE---TVVTGLETFGKPMEEAQAGDNVALLLRGVARDTVRRGQVVAAPGSVVPAR--RFRARVYVLSA--REGGRSTPLTTGYRPQFYIRTADVVGDV------DLGEE-AVARPGDTVTMTVELGRDVP---LETGLG---FAIREGGRTVGAGTVTAVE------------------"
 
107
                        %) /*ali_tuf_pro*/
 
108
 
 
109
                aacid                   "392 "
 
110
                nuc                     "1179 "
 
111
                db_name                 "[EBI] Streptomyces coelicolor"
 
112
                gene                    "[EBI] S.coelicolor tuf3 gene"
 
113
                id                      "[EBI] SCTIUF3"
 
114
                keywords                "[EBI] elongation factor Tu3 tuf3 gene."
 
115
                tmp                     "395 "
 
116
                aa                      "392 "
 
117
                aa_pro                  "392 "
 
118
                %) /*species*/
 
119
 
 
120
        species         :5000   %% (%
 
121
                name            :7600   "MucRacem"
 
122
                flag            :7000   "h"
 
123
                ali_tuf_pro     :5000   %% (%
 
124
                        data            :7500   "MGKE-----KTHVNVVVIGHVDSGKSTTTGHLIYKCGGIDKRTIEKFEKEAAELGKGS---FKYA-WVLDKLKAERERGITIDIALWKFETPKYNVTVIDAPGHRDFIKNMITGTSQADCAILIIAGGTGEFEAGISKDGQTREHALLAFTLGFRQLIVAINKMDTTKW-SQDRYNEIVKEVSGFI-KKIGFNPKSVPFVPISGWHGDNMLDESTNMPWFKGWNKETKAGSKTGKTLLEAID-AIEPPVRPSDKPLRLPLQDVYKIGGIGTVPVGRVETGTIKAGMVVNFAPAAV---TTEVKSVEMHHETLTEGLPGDNVGFNVKNVSVKDIRRGNVCSDSKNDPAKESASFTAQVIILNHPGQISAGYAPVLDCHTAHIACKFSELIEKIDRRSGKKMEDSPKFVKSGDSAIVKMVPSKPMCVEAYTDYPPLGRFAVRDMRQTVAVGVIKAVEKVDKAGKVTKAAAKASKK"
 
125
                        %) /*ali_tuf_pro*/
 
126
 
 
127
                ali_tuf_dna     :5000   %% (%
 
128
                        data            :7500   "ATGGGTAAAGAG---------------AAGACTCACGTTAACGTCGTCGTCATTGGTCACGTCGATTCCGGTAAATCTACTACTACTGGTCACTTGATTTACAAGTGTGGTGGTATTGATAAGCGTACCATCGAGAAGTTCGAGAAGGAAGCTGCCGAACTCGGTAAGGGTTCT---------TTCAAGTACGCC---TGGGTCCTTGATAAACTTAAGGCTGAACGTGAGCGTGGTATCACCATTGATATCGCTCTCTGGAAGTTCGAGACCCCCAAGTACAACGTTACTGTTATTGATGCTCCCGGCCATCGTGATTTCATCAAGAACATGATTACTGGTACTTCTCAAGCTGATTGTGCTATTCTTATCATTGCTGGTGGTACTGGTGAATTCGAAGCTGGTATCTCCAAGGATGGTCAAACCCGTGAGCACGCTCTTCTTGCCTTCACCTTGGGTTTCCGTCAATTGATTGTTGCTATCAACAAGATGGATACCACCAAGTGG---TCTCAAGATCGTTACAACGAAATCGTCAAGGAAGTTTCCGGTTTCATC---AAGAAGATTGGTTTCAACCCCAAGTCTGTTCCCTTCGTCCCCATCTCTGGCTGGCACGGTGATAACATGTTGGATGAATCCACCAACATGCCCTGGTTCAAGGGATGGAACAAGGAGACCAAGGCTGGTTCCAAGACCGGTAAGACTCTCCTCGAAGCCATCGAT---GCTATTGAGCCCCCTGTCCGTCCTTCCGACAAGCCTCTCCGTCTTCCCCTCCAAGATGTCTACAAGATTGGTGGTATTGGTACAGTTCCCGTTGGTCGTGTTGAGACTGGTACTATCAAGGCTGGTATGGTTGTCAACTTTGCTCCCGCTGCTGTC---------ACCACCGAAGTCAAGTCCGTCGAAATGCATCACGAAACCCTCACTGAAGGTCTCCCCGGTGACAACGTCGGTTTCAACGTCAAGAACGTCTCCGTCAAGGATATCCGTCGTGGTAACGTCTGTTCCGACTCCAAGAACGATCCCGCTAAGGAATCTGCCTCTTTCACCGCTCAAGTTATTATCTTGAACCACCCCGGTCAAATCTCTGCTGGTTACGCACCAGTTCTCGATTGTCACACTGCTCACATCGCCTGTAAGTTCTCTGAACTCATTGAGAAGATTGATCGTCGTTCCGGTAAGAAGATGGAGGATTCTCCCAAGTTCGTCAAGTCTGGTGATTCCGCTATCGTCAAGATGGTTCCCTCCAAGCCCATGTGTGTCGAAGCTTACACTGACTATCCTCCTCTTGGTCGTTTCGCTGTCCGTGATATGCGTCAAACCGTCGCTGTCGGTGTCATCAAGGCTGTCGAGAAGGTTGACAAGGCTGGTAAGGTCACCAAGGCCGCTGCCAAGGCTTCCAAGAAA......."
 
129
                        %) /*ali_tuf_dna*/
 
130
 
 
131
                full_name               "Mucor racemosus"
 
132
                aacid                   "458 "
 
133
                acc                     "ARB_5ADBD66E"
 
134
                tmp                     "445 "
 
135
                exclude                 "does not align"
 
136
                aa                      "458 "
 
137
                aa_pro                  "441 "
 
138
                %) /*species*/
 
139
 
 
140
        species         :5000   %% (%
 
141
                name            :7600   "MucRace2"
 
142
                flag            :7000   "h"
 
143
                ali_tuf_pro     :5000   %% (%
 
144
                        data            :7500   "MGKE-----KTHVNVVVIGHVDSGKSTTTGHLIYKCGGIDKRTIEKFEKEAAELGKGS---FKYA-WVLDKLKAERERGITIDIALWKFETPKYNVTVIDAPGHRDFIKNMITGTSQADCAILIIAGGTGEFEAGISKDGQTREHALLAFTLGVRQLIVAINKMDTTKW-SQDRYNEIVKEVSGFI-KKIGFNPKSVPFVPISGWHGDNMLDESTNMPWFKGWNKETKAGSKTGKTLLEAID-AIEPPVRPSDKPLRLPLQDVYKIGGIGTVPVGRVETGTIKAGMVVNFAPAAV---TTEVKSVEMHHETLTEGLPGDNVGFNVKNVSVKDIRRGNVCSDSKNDPAKESASFTAQVIILNHPGQISAGYAPVLDCHTAHIACKFSELIEKIDRRS-EKMEDSPKFVKSGDSAIVKMVPSKPMCVEAYTDYPPLGRFAVRDMRQTVAVGVIKAVEKVDKAGKVTKAAAKASKK"
 
145
                        %) /*ali_tuf_pro*/
 
146
 
 
147
                ali_tuf_dna     :5000   %% (%
 
148
                        data            :7500   "ATGGGTAAGGAG---------------AAGACTCACGTTAACGTCGTCGTCATTGGTCACGTCGATTCCGGTAAATCTACTACTACTGGTCACTTGATTTACAAGTGTGGTGGTATTGATAAGCGTACCATCGAGAAGTTCGAGAAGGAAGCTGCCGAACTCGGTAAGGGTTCT---------TTCAAGTACGCT---TGGGTCCTTGATAAACTTAAGGCTGAACGTGAGCGTGGTATCACCATTGATATCGCTCTCTGGAAGTTCGAGACCCCCAAGTACAACGTCACCGTTATTGATGCTCCCGGTCATCGTGATTTCATCAAGAACATGATTACTGGTACTTCTCAAGCCGATTGTGCCATTCTTATTATTGCTGGTGGTACTGGTGAATTCGAAGCTGGTATCTCCAAGGATGGTCAAACCCGTGAGCACGCTCTTCTTGCCTTCACCTTGGGTGTCCGTCAATTGATTGTTGCTATCAACAAGATGGATACCACCAAGTGG---TCTCAAGATCGTTACAACGAAATCGTCAAGGAAGTTTCCGGTTTCATC---AAGAAGATTGGTTTCAACCCCAAGTCTGTTCCCTTCGTCCCCATCTCTGGCTGGCACGGTGATAACATGTTGGATGAATCCACCAACATGCCCTGGTTCAAGGGATGGAACAAGGAGACCAAGGCTGGTTCCAAGACCGGTAAGACTCTCCTCGAAGCCATCGAT---GCTATTGAGCCCCCTGTCCGTCCTTCCGACAAGCCTCTCCGTCTTCCCCTCCAAGATGTCTACAAGATTGGTGGTATTGGTACAGTTCCCGTTGGTCGTGTTGAGACTGGTACTATCAAGGCTGGTATGGTTGTCAACTTTGCTCCCGCTGCTGTC---------ACCACCGAAGTCAAGTCCGTCGAAATGCACCACGAAACCCTCACTGAAGGTCTCCCCGGTGACAACGTTGGTTTCAACGTCAAGAACGTCTCCGTCAAGGATATCCGTCGTGGTAACGTCTGTTCCGACTCCAAGAACGATCCCGCTAAGGAATCTGCCTCTTTCACCGCTCAAGTTATCATCTTGAACCACCCCGGTCAAATCTCTGCTGGTTACGCACCAGTTCTCGATTGTCACACTGCTCACATCGCCTGTAAGTTCTCTGAACTCATTGAGAAGATTGATCGTCGTTCC---GAGAAGATGGAGGATTCTCCTAAGTTTGTCAAGTCTGGTGATTCCGCTATCGTCAAGATGGTTCCCTCCAAGCCCATGTGTGTCGAAGCTTACACTGACTATCCTCCTCTTGGTCGTTTCGCTGTCCGTGATATGCGTCAAACCGTCGCTGTCGGTGTCATCAAGGCCGTCGAGAAGGTTGACAAGGCTGGTAAGGTCACCAAGGCCGCTGCCAAGGCTTCCAAGAAA......."
 
149
                        %) /*ali_tuf_dna*/
 
150
 
 
151
                full_name               "Mucor racemosus"
 
152
                aacid                   "457 "
 
153
                acc                     "ARB_3627F120"
 
154
                tmp                     "444 "
 
155
                exclude                 "does not align"
 
156
                aa                      "457 "
 
157
                aa_pro                  "440 "
 
158
                %) /*species*/
 
159
 
 
160
        species         :5000   %% (%
 
161
                name            :7600   "MucRace3"
 
162
                flag            :7000   "h"
 
163
                ali_tuf_pro     :5000   %% (%
 
164
                        data            :7500   "MGKE-----KTHVNVVVIGHVDSGKSTTTGHLIYKCGGIDKRTIEEFEKEAAELGKGS---FKYA-WVLDKLKAERERGITIDIALWKFETPKYNVTVIDAPGHRDFIKNMITGTSQADCAILIIAGGTGEFEAGISKDGQTREHALLAFTLGFRQLIVAINKMDTTKW-SQDRYNEIVKEVSGFI-KKIGFNPKSVPFVPISGWHGDNMLDESTNMPWFKGWNKETKAGSKTGKTLLEAID-AIEPPVRPSDKPLRLPLQDVYKIGGIGTVPVGRVETGTIKAGMVVNFAPAAV---TTEVKSVEMHHETLTEGLPGDNVGFNVKNVSVKDIRRGNVCSDSKNDPAKESASFTAQVIILNHPGQISAGYAPVLDCHTAHIACKFSELIEKIDRRSGKKMEDSPKFVKSGDSAIVKMVPSKPMCVEAYTDYPPLGRFAVRDMRQTVAVGVIKAVEKVDKAGKVTKAAAKASKK"
 
165
                        %) /*ali_tuf_pro*/
 
166
 
 
167
                ali_tuf_dna     :5000   %% (%
 
168
                        data            :7500   "ATGGGTAAAGAG---------------AAGACTCACGTTAACGTTGTCGTTATTGGTCACGTCGATTCCGGTAAGTCCACCACCACTGGTCACTTGATTTACAAGTGTGGTGGTATCGACAAGCGTACCATCGAAGAGTTCGAGAAGGAAGCTGCTGAACTCGGTAAGGGTTCC---------TTCAAGTACGCC---TGGGTTCTTGACAAACTCAAGGCTGAACGTGAGCGTGGTATCACCATCGATATTGCTCTCTGGAAGTTCGAGACCCCCAAGTACAATGTCACTGTCATTGATGCTCCTGGCCATCGTGATTTCATCAAGAACATGATTACTGGTACTTCTCAAGCTGATTGTGCTATTCTTATCATTGCTGGTGGTACTGGTGAATTCGAAGCTGGTATCTCCAAGGATGGTCAAACCCGTGAGCACGCTCTTCTTGCCTTCACCTTGGGGTTCCGTCAATTGATTGTTGCTATCAACAAGATGGATACCACCAAGTGG---TCTCAAGATCGTTACAACGAAATCGTCAAGGAAGTTTCCGGTTTCATC---AAGAAGATTGGTTTCAACCCCAAGTCTGTTCCCTTCGTCCCCATCTCTGGCTGGCACGGTGATAACATGTTGGATGAATCCACCAACATGCCCTGGTTCAAGGGATGGAACAAGGAGACCAAGGCTGGTTCCAAGACCGGTAAGACTCTCCTCGAAGCCATCGAT---GCTATTGAGCCCCCTGTCCGTCCCTCCGACAAGCCTCTCCGTCTTCCCCTCCAAGATGTCTACAAGATTGGTGGTATTGGTACAGTTCCCGTTGGTCGTGTTGAGACTGGTACTATCAAGGCTGGTATGGTTGTCAACTTTGCTCCCGCTGCTGTC---------ACCACCGAAGTCAAGTCCGTCGAAATGCACCACGAAACCCTCACTGAAGGTCTCCCCGGTGACAACGTCGGTTTCAACGTCAAGAACGTCTCCGTCAAGGATATCCGTCGTGGTAACGTCTGTTCCGACTCCAAGAACGATCCCGCCAAGGAATCTGCCTCTTTCACCGCTCAAGTTATTATCTTGAACCACCCCGGTCAAATCTCTGCTGGTTACGCACCAGTTCTCGATTGTCACACTGCTCACATCGCCTGTAAGTTCTCTGAACTCATTGAGAAGATTGATCGTCGTTCCGGTAAGAAGATGGAGGATAGCCCCAAGTTCGTCAAGTCTGGTGATTCCGCTATCGTCAAGATGGTTCCCTCCAAGCCCATGTGTGTCGAAGCTTACACTGACTATCCTCCTCTTGGTCGTTTCGCTGTCCGTGATATGCGTCAAACCGTCGCTGTCGGTGTCATCAAGGCCGTCGAGAAGGTTGACAAGGCTGGTAAGGTCACCAAGGCCGCTGCCAAGGCTTCCAAGAAA......."
 
169
                        %) /*ali_tuf_dna*/
 
170
 
 
171
                full_name               "Mucor racemosus"
 
172
                aacid                   "458 "
 
173
                acc                     "ARB_73CEEA74"
 
174
                tmp                     "445 "
 
175
                exclude                 "does not align"
 
176
                aa                      "458 "
 
177
                aa_pro                  "441 "
 
178
                %) /*species*/
 
179
 
 
180
        species         :5000   %% (%
 
181
                name            :7600   "AbdGlauc"
 
182
                flag            :7000   "h"
 
183
                ali_tuf_pro     :5000   %% (%
 
184
                        data            :7500   "MGKE-----KTHVNVVVIGHVDSGKSTTTGHLIYKCGGIDKRTIEKFEKEAAELGKGS---FKYA-WVLDKLKAERERGITIDIALWKFETPKYHVTVIDAPGHRDFIKNMITGTSQADCGILIIAAGTGEFEAGISKDGQTREHALLAFTLGVRQLIVAINKMDSTKW-SEQRFNEIIKEVSGFI-KKIGFNPKSVPFVPISGWHGDNMLEESTNMPWYKGWNKETKAGAKSGKTLLDAID-AIDPPQRPSDKPLRLPLQDVYKIGGIGTVPVGRVETGVIKAGMVVTFAPANV---TTEVKSVEMHHEQLVEGLPGDNVGFNVKNVSVKDIRRGNVCSDSKNDPAKEAGSFTAQVIVLNHPGQIGAGYAPVLDCHTAHIACKFAELLEKIDRRSGKKLEDAPKFVKSGDSAIVKMIPSKPMCVEAYTDYPPLGRFAVRDMRQTVAVGVIKAVEKVDKAGKVTKAAAKAGEK"
 
185
                        %) /*ali_tuf_pro*/
 
186
 
 
187
                ali_tuf_dna     :5000   %% (%
 
188
                        data            :7500   "ATGGGTAAAGAA---------------AAGACTCACGTTAACGTCGTTGTCATTGGTCACGTCGATTCTGGTAAATCCACCACCACTGGTCATTTGATCTACAAGTGCGGTGGTATTGACAAGCGTACCATTGAAAAGTTCGAAAAGGAAGCTGCTGAACTCGGTAAGGGTTCC---------TTCAAGTACGCC---TGGGTGTTGGACAAGCTCAAGGCCGAACGTGAACGTGGTATCACCATCGATATCGCTCTCTGGAAGTTCGAAACCCCCAAGTACCACGTCACCGTCATTGACGCCCCTGGCCATCGTGATTTCATCAAGAACATGATTACTGGTACTTCTCAAGCTGATTGCGGTATTCTTATCATTGCTGCCGGTACTGGTGAATTCGAAGCTGGTATCTCCAAGGATGGTCAAACCCGTGAACACGCTTTGTTGGCTTTCACCCTCGGTGTCCGTCAATTGATCGTCGCCATTAACAAGATGGATTCCACCAAGTGG---TCCGAACAACGCTTCAACGAAATCATCAAGGAAGTGTCTGGCTTCATC---AAGAAGATCGGTTTCAACCCCAAGTCTGTCCCCTTCGTCCCCATCTCTGGCTGGCACGGTGACAACATGTTGGAAGAATCTACCAACATGCCCTGGTACAAGGGATGGAACAAGGAAACCAAGGCTGGTGCCAAGTCTGGCAAGACTCTCTTGGATGCCATCGAT---GCTATTGATCCTCCTCAACGTCCTTCCGACAAGCCCCTCCGTCTCCCTCTTCAAGATGTGTACAAGATCGGTGGTATTGGTACTGTCCCCGTCGGTCGTGTCGAAACTGGTGTCATCAAGGCCGGTATGGTCGTCACCTTCGCTCCCGCTAACGTC---------ACCACTGAAGTCAAGTCCGTCGAAATGCATCACGAACAATTGGTTGAAGGTCTCCCCGGTGACAACGTCGGTTTCAACGTCAAGAACGTCTCCGTCAAGGATATCCGTCGTGGTAACGTCTGCTCTGACTCCAAGAACGACCCCGCCAAGGAAGCCGGCTCCTTCACTGCCCAAGTCATTGTCCTTAACCATCCTGGTCAAATCGGTGCTGGTTACGCTCCTGTCTTGGATTGCCACACTGCTCACATTGCCTGTAAGTTCGCCGAACTCTTGGAAAAGATCGATCGTCGTTCCGGTAAGAAGCTCGAAGATGCTCCCAAGTTCGTCAAGTCTGGTGATTCCGCTATCGTCAAGATGATCCCCTCCAAGCCCATGTGTGTCGAAGCTTACACTGACTACCCTCCTCTTGGTCGTTTCGCCGTCCGTGATATGCGTCAAACCGTCGCTGTTGGTGTCATCAAGGCCGTCGAAAAGGTTGACAAGGCTGGCAAGGTCACCAAGGCTGCTGCCAAGGCTGGCGAGAAA......."
 
189
                        %) /*ali_tuf_dna*/
 
190
 
 
191
                full_name               "Absidia glauca"
 
192
                aacid                   "458 "
 
193
                acc                     "ARB_A706F312"
 
194
                tmp                     "445 "
 
195
                exclude                 "does not align"
 
196
                aa                      "458 "
 
197
                aa_pro                  "441 "
 
198
                %) /*species*/
 
199
 
 
200
        species         :5000   %% (%
 
201
                name            :7600   "SacCere5"
 
202
                flag            :7000   "h"
 
203
                ali_tuf_pro     :5000   %% (%
 
204
                        data            :7500   "MGKE-----KSHINVVVIGHVDSGKSTTTGHLIYKCGGIDKRTIEKFEKEAAELGKGS---FKYA-WVLDKLKAERERGITIDIALWKFETPKYQVTVIDAPGHRDFIKNMITGTSQADCAILIIAGGVGEFEAGISKDGQTREHALLAFTLGVRQLIVAVNKMDSVKW-DESRFQEIVKETSNFI-KKVGYNPKTVPFVPISGWNGDNMIEATTNAPWYKGWEKETKAGVVKGKTLLEAID-AIEQPSRPTDKPLRLPLQDVYKIGGIGTVPVGRVETGVIKPGMVVTFAPAGV---TTEVKSVEMHHEQLEQGVPGDNVGFNVKNVSVKEIRRGNVCGDAKNDPPKGCASFNATVIVLNHPGQISAGYSPVLDCHTAHIACRFDELLEKNDRRSGKKLEDHPKFLKSGDAALVKFVPSKPMCVEAFSEYPPLGRFAVRDMRQTVAVGVIKSVDKTEKAAKVTKAAQKAAKK"
 
205
                        %) /*ali_tuf_pro*/
 
206
 
 
207
                full_name               "Saccharomyces cerevisiae"
 
208
                aacid                   "458 "
 
209
                acc                     "ARB_63F7364D"
 
210
                tmp                     "445 "
 
211
                exclude                 "does not align"
 
212
                aa                      "458 "
 
213
                aa_pro                  "441 "
 
214
                %) /*species*/
 
215
 
 
216
        species         :5000   %% (%
 
217
                name            :7600   "CddAlbic"
 
218
                flag            :7000   "h"
 
219
                ali_tuf_pro     :5000   %% (%
 
220
                        data            :7500   "MGKE-----KTHVNVVVIGHVDSGKSTTTGHLIYKCGGIDKRTIEKFEKEAAELGKGS---FKYA-WVLDKLKAERERGITIDIALWKFETPKYHVTVIDAPGHRDFIKNMITGTSQADCAILIIAGGTGEFEAGISKDGQTREHALLAYTLGVKQLIVAVNKMDSVKW-DKNRFEEIIKETSNFV-KKVGYNPKTVPFVPISGWNGDNMIEPSTNCPWYKGWEKETKSGKVTGKTLLEAID-AIEPPTRPTDKPLRLPLQDVYKIGGIGTVPVGRVETGIIKAGMVVTFAPAGV---TTEVKSVEMHHEQLAEGVPGDNVGFNVKNVSVKEIRRGNVCGDSNNDPPKGCDSFNAQVIVLNHPGQISAGYSPVLDCHTAHIACKFDTLVEKIDRRTGKKLEENPKFVKSGDAAIVKMVPTKPMCVEAFTDYPPLGRFAVRDMRQTVAVGVIKSVEKSDKAGKVTKAAQKAAKK"
 
221
                        %) /*ali_tuf_pro*/
 
222
 
 
223
                ali_tuf_dna     :5000   %% (%
 
224
                        data            :7500   "ATGGGTAAAGAA---------------AAAACTCACGTTAACGTTGTTGTTATTGGTCACGTCGATTCCGGTAAATCTACTACCACCGGTCACTTAATTTACAAGTGTGGTGGTATCGATAAAAGAACCATTGAAAAATTCGAAAAAGAAGCTGCTGAATTGGGTAAAGGTTCT---------TTCAAATACGCT---TGGGTCTTGGACAAATTGAAGGCTGAAAGAGAAAGAGGTATCACCATTGATATTGCTTTGTGGAAATTCGAAACTCCAAAATACCACGTTACCGTCATTGATGCTCCAGGTCACAGAGATTTCATCAAGAATATGATCACTGGTACTTCTCAAGCTGATTGTGCTATTTTGATTATTGCTGGTGGTACTGGTGAATTCGAAGCCGGTATTTCTAAGGATGGTCAAACCAGAGAACACGCTTTGTTGGCTTACACTTTGGGTGTCAAACAATTGATTGTTGCTGTCAACAAGATGGACTCTGTCAAATGG---GACAAAAACAGATTTGAAGAAATCATCAAGGAAACCTCCAACTTCGTC---AAGAAGGTTGGTTACAACCCAAAGACTGTTCCATTCGTTCCAATCTCTGGTTGGAATGGTGACAACATGATTGAACCATCCACCAACTGTCCATGGTACAAGGGTTGGGAAAAGGAAACCAAATCCGGTAAAGTTACTGGTAAGACCTTGTTAGAAGCTATTGAC---GCTATTGAACCACCAACCAGACCAACCGACAAACCATTGAGATTGCCATTGCAAGATGTTTACAAGATTGGTGGTATTGGTACTGTGCCAGTCGGTAGAGTTGAAACTGGTATCATCAAAGCCGGTATGGTTGTTACTTTCGCCCCAGCTGGTGTT---------ACCACTGAAGTCAAGTCCGTTGAAATGCATCACGAACAATTGGCTGAAGGTGTTCCAGGTGACAATGTTGGTTTCAACGTTAAGAACGTTTCCGTTAAAGAAATTAGAAGAGGTAACGTTTGTGGTGACTCCAATAACGATCCACCAAAGGGTTGTGACTCTTTCAATGCCCAAGTCATTGTTTTGAACCATCCAGGTCAAATCTCTGCTGGTTACTCTCCAGTCTTGGATTGTCACACTGCCCACATTGCTTGTAAATTCGACACTTTGGTTGAAAAGATTGACAGAAGAACTGGTAAGAAATTGGAAGAAAATCCAAAATTCGTCAAATCCGGTGATGCTGCTATCGTCAAGATGGTCCCAACCAAACCAATGTGTGTTGAAGCTTTCACTGACTACCCACCATTAGGTAGATTCGCTGTCAGAGATATGAGACAAACCGTTGCTGTTGGTGTCATCAAATCTGTTGAAAAATCCGACAAAGCTGGTAAAGTTACCAAGGCTGCTCAAAAAGCTGCTAAGAAA......."
 
225
                        %) /*ali_tuf_dna*/
 
226
 
 
227
                full_name               "Candida albicans"
 
228
                aacid                   "458 "
 
229
                acc                     "ARB_10F3627F"
 
230
                tmp                     "445 "
 
231
                exclude                 "does not align"
 
232
                aa                      "458 "
 
233
                aa_pro                  "441 "
 
234
                %) /*species*/
 
235
 
 
236
        %) /*species_data*/
 
237
 
 
238
tree_data               %% (%
 
239
        tree_prot               %% (%
 
240
                tree                    "N0.58482,3.41564;N0.58248,0.66885;N0.04119,0.27423;N0.27475,0.31772;LBctFra12\ALCytLyti6\ALTaxOcell\AN0.09705,0.15387;LStrRamo3\ALStrCoel9\AN0.12346,0.09193;N0.07553,0.07358;N0.06787,0.09757;N0.01554,-0.00981;LMucRacem\ALMucRace2\ALMucRace3\ALAbdGlauc\AN0.17475,0.02915;LSacCere5\ALCddAlbic\A"
 
241
                nnodes                  %i 10
 
242
                ruler                   %% (%
 
243
                        size                    %f 0.1
 
244
                        RADIAL                  %% (%
 
245
                                ruler_y                 %f 5.80564
 
246
                                ruler_x                 %f 0
 
247
                                %) /*RADIAL*/
 
248
 
 
249
                        text_x                  %f 0
 
250
                        text_y                  %f 0
 
251
                        ruler_width             %i 0
 
252
                        LIST                    %% (%
 
253
                                ruler_y                 %f 0
 
254
                                ruler_x                 %f 0
 
255
                                text_x                  %f 0
 
256
                                text_y                  %f 0
 
257
                                %) /*LIST*/
 
258
 
 
259
                        %) /*ruler*/
 
260
 
 
261
                security                %i 0
 
262
                remark                  "Phylip Categories Neighbour dotgapmax _834\n[created as copy of 'tree_workdec']"
 
263
                node                    %% (%
 
264
                        id                      %i 5
 
265
                        group_name              "Eukarya EF-Tu"
 
266
                        %) /*node*/
 
267
 
 
268
                node                    %% (%
 
269
                        id                      %i 1
 
270
                        group_name              "Bacteria EF-Tu"
 
271
                        %) /*node*/
 
272
 
 
273
                node                    %% (%
 
274
                        id                      %i 0
 
275
                        group_name              "EF-Tu / EF-1a"
 
276
                        %) /*node*/
 
277
 
 
278
                %) /*tree_prot*/
 
279
 
 
280
        %) /*tree_data*/
 
281
 
 
282
arb_presets             %% (%
 
283
        fonts                   %% (%
 
284
                font0                   %% (%
 
285
                        family                  %i 2
 
286
                        style                   %i 3
 
287
                        size                    %i 6
 
288
                        %) /*font0*/
 
289
 
 
290
                font1                   %% (%
 
291
                        family                  %i 2
 
292
                        style                   %i 3
 
293
                        size                    %i 5
 
294
                        %) /*font1*/
 
295
 
 
296
                font2                   %% (%
 
297
                        family                  %i 0
 
298
                        style                   %i 0
 
299
                        size                    %i 0
 
300
                        %) /*font2*/
 
301
 
 
302
                font3                   %% (%
 
303
                        family                  %i 0
 
304
                        style                   %i 0
 
305
                        size                    %i 0
 
306
                        %) /*font3*/
 
307
 
 
308
                font4                   %% (%
 
309
                        family                  %i 0
 
310
                        style                   %i 0
 
311
                        size                    %i 0
 
312
                        %) /*font4*/
 
313
 
 
314
                font5                   %% (%
 
315
                        family                  %i 0
 
316
                        style                   %i 0
 
317
                        size                    %i 0
 
318
                        %) /*font5*/
 
319
 
 
320
                %) /*fonts*/
 
321
 
 
322
        div                     %% (%
 
323
                add_width_xfig          %i 2
 
324
                ruler_len               %f 0.1
 
325
                ruler_width             %i 2
 
326
                ruler_x_offset          %f 0
 
327
                ruler_y_offset          %f 0.5
 
328
                %) /*div*/
 
329
 
 
330
        tool0                   %% (%
 
331
                text                    "fastdnaml"
 
332
                tool_command            "fastdnaml <!s &"
 
333
                tool_file_type_save             %i 3
 
334
                tool_file_type_load             %i 0
 
335
                %) /*tool0*/
 
336
 
 
337
        tool1                   %% (%
 
338
                text                    "treetool "
 
339
                tool_command            "treetool !s"
 
340
                tool_file_type_save             %i 6
 
341
                tool_file_type_load             %i 6
 
342
                %) /*tool1*/
 
343
 
 
344
        tool2                   %% (%
 
345
                text                    "edtu"
 
346
                tool_command            "arb_edtu : &"
 
347
                tool_file_type_save             %i 0
 
348
                tool_file_type_load             %i 0
 
349
                %) /*tool2*/
 
350
 
 
351
        tool3                   %% (%
 
352
                text                    "phyl"
 
353
                tool_command            "arb_phyl : &"
 
354
                tool_file_type_save             %i 0
 
355
                tool_file_type_load             %i 0
 
356
                %) /*tool3*/
 
357
 
 
358
        tool4                   %% (%
 
359
                text                    "adm"
 
360
                tool_command            "arb_adm : &"
 
361
                tool_file_type_save             %i 0
 
362
                tool_file_type_load             %i 0
 
363
                %) /*tool4*/
 
364
 
 
365
        tool5                   %% (%
 
366
                text                    "TOOL 6   "
 
367
                tool_command            "echo no_tool defined"
 
368
                tool_file_type_save             %i 0
 
369
                tool_file_type_load             %i 0
 
370
                %) /*tool5*/
 
371
 
 
372
        tool6                   %% (%
 
373
                text                    "TOOL 7   "
 
374
                tool_command            "echo no_tool defined"
 
375
                tool_file_type_save             %i 0
 
376
                tool_file_type_load             %i 0
 
377
                %) /*tool6*/
 
378
 
 
379
        tool7                   %% (%
 
380
                text                    "TOOL 8   "
 
381
                tool_command            "echo no_tool defined"
 
382
                tool_file_type_save             %i 0
 
383
                tool_file_type_load             %i 0
 
384
                %) /*tool7*/
 
385
 
 
386
        tool8                   %% (%
 
387
                text                    "TOOL 9   "
 
388
                tool_command            "echo no_tool defined"
 
389
                tool_file_type_save             %i 0
 
390
                tool_file_type_load             %i 0
 
391
                %) /*tool8*/
 
392
 
 
393
        viewkey                 %% (%
 
394
                key_text                "name"
 
395
                len1                    %i 10
 
396
                flag2                   %i 0
 
397
                len2                    %i 10
 
398
                start                   %i 0
 
399
                pars                    ""
 
400
                group                   %i 0
 
401
                leaf                    %i 1
 
402
                %) /*viewkey*/
 
403
 
 
404
        changekey               %% (%
 
405
                changekey_text          "name"
 
406
                changekey_type          %i 0
 
407
                %) /*changekey*/
 
408
 
 
409
        changekey               %% (%
 
410
                changekey_text          "full_name"
 
411
                changekey_type          %i 0
 
412
                %) /*changekey*/
 
413
 
 
414
        changekey               %% (%
 
415
                changekey_text          "group_name"
 
416
                changekey_type          %i 0
 
417
                %) /*changekey*/
 
418
 
 
419
        changekey               %% (%
 
420
                changekey_text          "flag"
 
421
                changekey_type          %i 0
 
422
                %) /*changekey*/
 
423
 
 
424
        changekey               %% (%
 
425
                changekey_text          "alignment"
 
426
                changekey_type          %i 0
 
427
                %) /*changekey*/
 
428
 
 
429
        changekey               %% (%
 
430
                changekey_text          "errors"
 
431
                changekey_type          %i 1
 
432
                %) /*changekey*/
 
433
 
 
434
        changekey               %% (%
 
435
                changekey_text          "acc"
 
436
                changekey_type          %i 0
 
437
                %) /*changekey*/
 
438
 
 
439
        changekey               %% (%
 
440
                changekey_text          "author"
 
441
                changekey_type          %i 0
 
442
                %) /*changekey*/
 
443
 
 
444
        changekey               %% (%
 
445
                changekey_text          "date"
 
446
                changekey_type          %i 0
 
447
                %) /*changekey*/
 
448
 
 
449
        changekey               %% (%
 
450
                changekey_text          "in use"
 
451
                changekey_type          %i 0
 
452
                %) /*changekey*/
 
453
 
 
454
        changekey               %% (%
 
455
                changekey_text          "font"
 
456
                changekey_type          %i 1
 
457
                %) /*changekey*/
 
458
 
 
459
        viewkey                 %% (%
 
460
                key_text                "full_name"
 
461
                len1                    %i 30
 
462
                flag2                   %i 0
 
463
                len2                    %i 10
 
464
                start                   %i 0
 
465
                pars                    ""
 
466
                group                   %i 0
 
467
                leaf                    %i 1
 
468
                %) /*viewkey*/
 
469
 
 
470
        viewkey                 %% (%
 
471
                key_text                ""
 
472
                len1                    %i 40
 
473
                flag2                   %i 0
 
474
                len2                    %i 10
 
475
                start                   %i 0
 
476
                pars                    "taxonomy(1)"
 
477
                group                   %i 1
 
478
                leaf                    %i 1
 
479
                %) /*viewkey*/
 
480
 
 
481
        viewkey                 %% (%
 
482
                key_text                "acc"
 
483
                len1                    %i 90
 
484
                flag2                   %i 0
 
485
                len2                    %i 10
 
486
                start                   %i 0
 
487
                pars                    ":*=[*]"
 
488
                group                   %i 0
 
489
                leaf                    %i 1
 
490
                %) /*viewkey*/
 
491
 
 
492
        changekey               %% (%
 
493
                changekey_text          "short_name"
 
494
                changekey_type          %i 0
 
495
                %) /*changekey*/
 
496
 
 
497
        viewkey                 %% (%
 
498
                key_text                "def"
 
499
                len1                    %i 10
 
500
                flag2                   %i 0
 
501
                len2                    %i 10
 
502
                start                   %i 0
 
503
                pars                    ""
 
504
                group                   %i 0
 
505
                leaf                    %i 0
 
506
                %) /*viewkey*/
 
507
 
 
508
        changekey               %% (%
 
509
                changekey_text          "strain"
 
510
                changekey_type          %i 0
 
511
                %) /*changekey*/
 
512
 
 
513
        viewkey                 %% (%
 
514
                key_text                "ali_tuf_pro/data"
 
515
                pars                    ""
 
516
                len1                    %i 30
 
517
                start                   %i 0
 
518
                group                   %i 0
 
519
                leaf                    %i 0
 
520
                %) /*viewkey*/
 
521
 
 
522
        viewkey                 %% (%
 
523
                key_text                "aacid"
 
524
                pars                    ""
 
525
                len1                    %i 30
 
526
                start                   %i 0
 
527
                group                   %i 0
 
528
                leaf                    %i 0
 
529
                %) /*viewkey*/
 
530
 
 
531
        viewkey                 %% (%
 
532
                key_text                "ebi_tax"
 
533
                pars                    ""
 
534
                len1                    %i 30
 
535
                start                   %i 0
 
536
                group                   %i 0
 
537
                leaf                    %i 0
 
538
                %) /*viewkey*/
 
539
 
 
540
        viewkey                 %% (%
 
541
                key_text                "aa"
 
542
                pars                    ""
 
543
                len1                    %i 30
 
544
                start                   %i 0
 
545
                group                   %i 0
 
546
                leaf                    %i 0
 
547
                %) /*viewkey*/
 
548
 
 
549
        viewkey                 %% (%
 
550
                key_text                "aa_pro"
 
551
                pars                    ""
 
552
                len1                    %i 30
 
553
                start                   %i 0
 
554
                group                   %i 0
 
555
                leaf                    %i 0
 
556
                %) /*viewkey*/
 
557
 
 
558
        viewkey                 %% (%
 
559
                key_text                ""
 
560
                len1                    %i 30
 
561
                pars                    ""
 
562
                group                   %i 0
 
563
                leaf                    %i 0
 
564
                %) /*viewkey*/
 
565
 
 
566
        viewkey                 %% (%
 
567
                key_text                ""
 
568
                len1                    %i 30
 
569
                pars                    ""
 
570
                group                   %i 0
 
571
                leaf                    %i 0
 
572
                %) /*viewkey*/
 
573
 
 
574
        viewkey                 %% (%
 
575
                key_text                ""
 
576
                len1                    %i 30
 
577
                pars                    ""
 
578
                group                   %i 0
 
579
                leaf                    %i 0
 
580
                %) /*viewkey*/
 
581
 
 
582
        viewkey                 %% (%
 
583
                key_text                ""
 
584
                len1                    %i 30
 
585
                pars                    ""
 
586
                group                   %i 0
 
587
                leaf                    %i 0
 
588
                %) /*viewkey*/
 
589
 
 
590
        viewkey                 %% (%
 
591
                key_text                ""
 
592
                len1                    %i 30
 
593
                pars                    ""
 
594
                group                   %i 0
 
595
                leaf                    %i 0
 
596
                %) /*viewkey*/
 
597
 
 
598
        viewkey                 %% (%
 
599
                key_text                ""
 
600
                len1                    %i 30
 
601
                pars                    ""
 
602
                group                   %i 0
 
603
                leaf                    %i 0
 
604
                %) /*viewkey*/
 
605
 
 
606
        viewkey                 %% (%
 
607
                key_text                ""
 
608
                len1                    %i 30
 
609
                pars                    ""
 
610
                group                   %i 0
 
611
                leaf                    %i 0
 
612
                %) /*viewkey*/
 
613
 
 
614
        viewkey                 %% (%
 
615
                key_text                ""
 
616
                len1                    %i 30
 
617
                pars                    ""
 
618
                group                   %i 0
 
619
                leaf                    %i 0
 
620
                %) /*viewkey*/
 
621
 
 
622
        viewkey                 %% (%
 
623
                key_text                ""
 
624
                len1                    %i 30
 
625
                pars                    ""
 
626
                group                   %i 0
 
627
                leaf                    %i 0
 
628
                %) /*viewkey*/
 
629
 
 
630
        viewkey                 %% (%
 
631
                key_text                ""
 
632
                len1                    %i 30
 
633
                pars                    ""
 
634
                group                   %i 0
 
635
                leaf                    %i 0
 
636
                %) /*viewkey*/
 
637
 
 
638
        viewkey                 %% (%
 
639
                key_text                ""
 
640
                len1                    %i 30
 
641
                pars                    ""
 
642
                group                   %i 0
 
643
                leaf                    %i 0
 
644
                %) /*viewkey*/
 
645
 
 
646
        viewkey                 %% (%
 
647
                key_text                ""
 
648
                len1                    %i 30
 
649
                pars                    ""
 
650
                group                   %i 0
 
651
                leaf                    %i 0
 
652
                %) /*viewkey*/
 
653
 
 
654
        viewkey                 %% (%
 
655
                key_text                ""
 
656
                len1                    %i 30
 
657
                pars                    ""
 
658
                group                   %i 0
 
659
                leaf                    %i 0
 
660
                %) /*viewkey*/
 
661
 
 
662
        viewkey                 %% (%
 
663
                key_text                ""
 
664
                len1                    %i 30
 
665
                pars                    ""
 
666
                group                   %i 0
 
667
                leaf                    %i 0
 
668
                %) /*viewkey*/
 
669
 
 
670
        viewkey                 %% (%
 
671
                key_text                ""
 
672
                len1                    %i 30
 
673
                pars                    ""
 
674
                group                   %i 0
 
675
                leaf                    %i 0
 
676
                %) /*viewkey*/
 
677
 
 
678
        viewkey                 %% (%
 
679
                key_text                ""
 
680
                len1                    %i 30
 
681
                pars                    ""
 
682
                group                   %i 0
 
683
                leaf                    %i 0
 
684
                %) /*viewkey*/
 
685
 
 
686
        viewkey                 %% (%
 
687
                key_text                ""
 
688
                len1                    %i 30
 
689
                pars                    ""
 
690
                group                   %i 0
 
691
                leaf                    %i 0
 
692
                %) /*viewkey*/
 
693
 
 
694
        viewkey                 %% (%
 
695
                key_text                ""
 
696
                len1                    %i 30
 
697
                pars                    ""
 
698
                group                   %i 0
 
699
                leaf                    %i 0
 
700
                %) /*viewkey*/
 
701
 
 
702
        viewkey                 %% (%
 
703
                key_text                ""
 
704
                len1                    %i 30
 
705
                pars                    ""
 
706
                group                   %i 0
 
707
                leaf                    %i 0
 
708
                %) /*viewkey*/
 
709
 
 
710
        viewkey                 %% (%
 
711
                key_text                ""
 
712
                len1                    %i 30
 
713
                pars                    ""
 
714
                group                   %i 0
 
715
                leaf                    %i 0
 
716
                %) /*viewkey*/
 
717
 
 
718
        viewkey                 %% (%
 
719
                key_text                ""
 
720
                len1                    %i 30
 
721
                pars                    ""
 
722
                group                   %i 0
 
723
                leaf                    %i 0
 
724
                %) /*viewkey*/
 
725
 
 
726
        viewkey                 %% (%
 
727
                key_text                ""
 
728
                len1                    %i 30
 
729
                pars                    ""
 
730
                group                   %i 0
 
731
                leaf                    %i 0
 
732
                %) /*viewkey*/
 
733
 
 
734
        viewkey                 %% (%
 
735
                key_text                ""
 
736
                len1                    %i 30
 
737
                pars                    ""
 
738
                group                   %i 0
 
739
                leaf                    %i 0
 
740
                %) /*viewkey*/
 
741
 
 
742
        viewkey                 %% (%
 
743
                key_text                ""
 
744
                len1                    %i 30
 
745
                pars                    ""
 
746
                group                   %i 0
 
747
                leaf                    %i 0
 
748
                %) /*viewkey*/
 
749
 
 
750
        viewkey                 %% (%
 
751
                key_text                ""
 
752
                len1                    %i 30
 
753
                pars                    ""
 
754
                group                   %i 0
 
755
                leaf                    %i 0
 
756
                %) /*viewkey*/
 
757
 
 
758
        viewkey                 %% (%
 
759
                key_text                ""
 
760
                len1                    %i 30
 
761
                pars                    ""
 
762
                group                   %i 0
 
763
                leaf                    %i 0
 
764
                %) /*viewkey*/
 
765
 
 
766
        viewkey                 %% (%
 
767
                key_text                ""
 
768
                len1                    %i 30
 
769
                pars                    ""
 
770
                group                   %i 0
 
771
                leaf                    %i 0
 
772
                %) /*viewkey*/
 
773
 
 
774
        viewkey                 %% (%
 
775
                key_text                ""
 
776
                len1                    %i 30
 
777
                pars                    ""
 
778
                group                   %i 0
 
779
                leaf                    %i 0
 
780
                %) /*viewkey*/
 
781
 
 
782
        viewkey                 %% (%
 
783
                key_text                ""
 
784
                len1                    %i 30
 
785
                pars                    ""
 
786
                group                   %i 0
 
787
                leaf                    %i 0
 
788
                %) /*viewkey*/
 
789
 
 
790
        viewkey                 %% (%
 
791
                key_text                ""
 
792
                len1                    %i 30
 
793
                pars                    ""
 
794
                group                   %i 0
 
795
                leaf                    %i 0
 
796
                %) /*viewkey*/
 
797
 
 
798
        viewkey                 %% (%
 
799
                key_text                ""
 
800
                len1                    %i 30
 
801
                pars                    ""
 
802
                group                   %i 0
 
803
                leaf                    %i 0
 
804
                %) /*viewkey*/
 
805
 
 
806
        viewkey                 %% (%
 
807
                key_text                ""
 
808
                len1                    %i 30
 
809
                pars                    ""
 
810
                group                   %i 0
 
811
                leaf                    %i 0
 
812
                %) /*viewkey*/
 
813
 
 
814
        viewkey                 %% (%
 
815
                key_text                ""
 
816
                len1                    %i 30
 
817
                pars                    ""
 
818
                group                   %i 0
 
819
                leaf                    %i 0
 
820
                %) /*viewkey*/
 
821
 
 
822
        viewkey                 %% (%
 
823
                key_text                ""
 
824
                len1                    %i 30
 
825
                pars                    ""
 
826
                group                   %i 0
 
827
                leaf                    %i 0
 
828
                %) /*viewkey*/
 
829
 
 
830
        viewkey                 %% (%
 
831
                key_text                ""
 
832
                len1                    %i 30
 
833
                pars                    ""
 
834
                group                   %i 0
 
835
                leaf                    %i 0
 
836
                %) /*viewkey*/
 
837
 
 
838
        viewkey                 %% (%
 
839
                key_text                ""
 
840
                len1                    %i 30
 
841
                pars                    ""
 
842
                group                   %i 0
 
843
                leaf                    %i 0
 
844
                %) /*viewkey*/
 
845
 
 
846
        viewkey                 %% (%
 
847
                key_text                ""
 
848
                len1                    %i 30
 
849
                pars                    ""
 
850
                group                   %i 0
 
851
                leaf                    %i 0
 
852
                %) /*viewkey*/
 
853
 
 
854
        viewkey                 %% (%
 
855
                key_text                ""
 
856
                len1                    %i 30
 
857
                pars                    ""
 
858
                group                   %i 0
 
859
                leaf                    %i 0
 
860
                %) /*viewkey*/
 
861
 
 
862
        viewkey                 %% (%
 
863
                key_text                ""
 
864
                len1                    %i 30
 
865
                pars                    ""
 
866
                group                   %i 0
 
867
                leaf                    %i 0
 
868
                %) /*viewkey*/
 
869
 
 
870
        viewkey                 %% (%
 
871
                key_text                ""
 
872
                len1                    %i 30
 
873
                pars                    ""
 
874
                group                   %i 0
 
875
                leaf                    %i 0
 
876
                %) /*viewkey*/
 
877
 
 
878
        viewkey                 %% (%
 
879
                key_text                ""
 
880
                len1                    %i 30
 
881
                pars                    ""
 
882
                group                   %i 0
 
883
                leaf                    %i 0
 
884
                %) /*viewkey*/
 
885
 
 
886
        viewkey                 %% (%
 
887
                key_text                ""
 
888
                len1                    %i 30
 
889
                pars                    ""
 
890
                group                   %i 0
 
891
                leaf                    %i 0
 
892
                %) /*viewkey*/
 
893
 
 
894
        viewkey                 %% (%
 
895
                key_text                ""
 
896
                len1                    %i 30
 
897
                pars                    ""
 
898
                group                   %i 0
 
899
                leaf                    %i 0
 
900
                %) /*viewkey*/
 
901
 
 
902
        viewkey                 %% (%
 
903
                key_text                ""
 
904
                len1                    %i 30
 
905
                pars                    ""
 
906
                group                   %i 0
 
907
                leaf                    %i 0
 
908
                %) /*viewkey*/
 
909
 
 
910
        viewkey                 %% (%
 
911
                key_text                ""
 
912
                len1                    %i 30
 
913
                pars                    ""
 
914
                group                   %i 0
 
915
                leaf                    %i 0
 
916
                %) /*viewkey*/
 
917
 
 
918
        viewkey                 %% (%
 
919
                key_text                ""
 
920
                len1                    %i 30
 
921
                pars                    ""
 
922
                group                   %i 0
 
923
                leaf                    %i 0
 
924
                %) /*viewkey*/
 
925
 
 
926
        viewkey                 %% (%
 
927
                key_text                ""
 
928
                len1                    %i 30
 
929
                pars                    ""
 
930
                group                   %i 0
 
931
                leaf                    %i 0
 
932
                %) /*viewkey*/
 
933
 
 
934
        viewkey                 %% (%
 
935
                key_text                ""
 
936
                len1                    %i 30
 
937
                pars                    ""
 
938
                group                   %i 0
 
939
                leaf                    %i 0
 
940
                %) /*viewkey*/
 
941
 
 
942
        viewkey                 %% (%
 
943
                key_text                ""
 
944
                len1                    %i 30
 
945
                pars                    ""
 
946
                group                   %i 0
 
947
                leaf                    %i 0
 
948
                %) /*viewkey*/
 
949
 
 
950
        viewkey                 %% (%
 
951
                key_text                ""
 
952
                len1                    %i 30
 
953
                pars                    ""
 
954
                group                   %i 0
 
955
                leaf                    %i 0
 
956
                %) /*viewkey*/
 
957
 
 
958
        %) /*arb_presets*/
 
959
 
 
960
presets                 %% (%
 
961
        alignment       :6000   %% (%
 
962
                alignment_name  :7600   "ali_tuf_pro"
 
963
                alignment_len   :7600   %i 473
 
964
                aligned         :7000   %i 1
 
965
                alignment_write_security        :7600   %i 5
 
966
                alignment_type  :7600   "ami"
 
967
                alignment_rem           ""
 
968
                auto_format             %i 0
 
969
                %) /*alignment*/
 
970
 
 
971
        use                     "ali_tuf_dna"
 
972
        max_alignment_len               %i 2000
 
973
        alignment_len           %i 0
 
974
        max_name_len            %i 9
 
975
        alignment       :6000   %% (%
 
976
                alignment_name  :7600   "ali_tuf_dna"
 
977
                alignment_len   :7600   %i 1426
 
978
                aligned         :7000   %i 1
 
979
                alignment_write_security        :7600   %i 5
 
980
                alignment_type  :7600   "dna"
 
981
                alignment_rem           ""
 
982
                auto_format             %i 0
 
983
                %) /*alignment*/
 
984
 
 
985
        key_data                %% (%
 
986
                key                     %% (%
 
987
                        key_name                "name"
 
988
                        key_type                %i 12
 
989
                        key_hidden              %i 0
 
990
                        %) /*key*/
 
991
 
 
992
                key                     %% (%
 
993
                        key_name                "full_name"
 
994
                        key_type                %i 12
 
995
                        key_hidden              %i 0
 
996
                        %) /*key*/
 
997
 
 
998
                key                     %% (%
 
999
                        key_name                "strain"
 
1000
                        key_type                %i 12
 
1001
                        key_hidden              %i 0
 
1002
                        %) /*key*/
 
1003
 
 
1004
                key                     %% (%
 
1005
                        key_name                "acc"
 
1006
                        key_type                %i 12
 
1007
                        key_hidden              %i 0
 
1008
                        %) /*key*/
 
1009
 
 
1010
                key                     %% (%
 
1011
                        key_name                "author"
 
1012
                        key_type                %i 12
 
1013
                        key_hidden              %i 0
 
1014
                        %) /*key*/
 
1015
 
 
1016
                key                     %% (%
 
1017
                        key_name                "title"
 
1018
                        key_type                %i 12
 
1019
                        key_hidden              %i 0
 
1020
                        %) /*key*/
 
1021
 
 
1022
                key                     %% (%
 
1023
                        key_name                "journal"
 
1024
                        key_type                %i 12
 
1025
                        key_hidden              %i 0
 
1026
                        %) /*key*/
 
1027
 
 
1028
                key                     %% (%
 
1029
                        key_name                "gene"
 
1030
                        key_type                %i 12
 
1031
                        key_hidden              %i 0
 
1032
                        %) /*key*/
 
1033
 
 
1034
                key                     %% (%
 
1035
                        key_name                "tmp"
 
1036
                        key_type                %i 12
 
1037
                        key_hidden              %i 0
 
1038
                        %) /*key*/
 
1039
 
 
1040
                key                     %% (%
 
1041
                        key_name                "ali_tuf_dna"
 
1042
                        key_type                %i 15
 
1043
                        key_hidden              %i 0
 
1044
                        %) /*key*/
 
1045
 
 
1046
                key                     %% (%
 
1047
                        key_name                "ali_tuf_dna/data"
 
1048
                        key_type                %i 12
 
1049
                        key_hidden              %i 0
 
1050
                        %) /*key*/
 
1051
 
 
1052
                key                     %% (%
 
1053
                        key_name                "ali_tuf_pro"
 
1054
                        key_type                %i 15
 
1055
                        key_hidden              %i 0
 
1056
                        %) /*key*/
 
1057
 
 
1058
                key                     %% (%
 
1059
                        key_name                "ali_tuf_pro/data"
 
1060
                        key_type                %i 12
 
1061
                        key_hidden              %i 0
 
1062
                        %) /*key*/
 
1063
 
 
1064
                key                     %% (%
 
1065
                        key_name                "flag"
 
1066
                        key_type                %i 12
 
1067
                        key_hidden              %i 0
 
1068
                        %) /*key*/
 
1069
 
 
1070
                key                     %% (%
 
1071
                        key_name                "short_name"
 
1072
                        key_type                %i 12
 
1073
                        key_hidden              %i 0
 
1074
                        %) /*key*/
 
1075
 
 
1076
                key                     %% (%
 
1077
                        key_name                "date"
 
1078
                        key_type                %i 12
 
1079
                        key_hidden              %i 0
 
1080
                        %) /*key*/
 
1081
 
 
1082
                key                     %% (%
 
1083
                        key_name                "file"
 
1084
                        key_type                %i 12
 
1085
                        key_hidden              %i 0
 
1086
                        %) /*key*/
 
1087
 
 
1088
                key                     %% (%
 
1089
                        key_name                "gcg_id"
 
1090
                        key_type                %i 12
 
1091
                        key_hidden              %i 0
 
1092
                        %) /*key*/
 
1093
 
 
1094
                key                     %% (%
 
1095
                        key_name                "tax"
 
1096
                        key_type                %i 12
 
1097
                        key_hidden              %i 0
 
1098
                        %) /*key*/
 
1099
 
 
1100
                key                     %% (%
 
1101
                        key_name                "aacid"
 
1102
                        key_type                %i 12
 
1103
                        key_hidden              %i 0
 
1104
                        %) /*key*/
 
1105
 
 
1106
                key                     %% (%
 
1107
                        key_name                "ali_tuf_sim"
 
1108
                        key_type                %i 15
 
1109
                        key_hidden              %i 0
 
1110
                        %) /*key*/
 
1111
 
 
1112
                key                     %% (%
 
1113
                        key_name                "ali_tuf_sim/data"
 
1114
                        key_type                %i 12
 
1115
                        key_hidden              %i 0
 
1116
                        %) /*key*/
 
1117
 
 
1118
                key                     %% (%
 
1119
                        key_name                "ali_tuf_pro_2"
 
1120
                        key_type                %i 15
 
1121
                        key_hidden              %i 0
 
1122
                        %) /*key*/
 
1123
 
 
1124
                key                     %% (%
 
1125
                        key_name                "ali_tuf_pro_2/data"
 
1126
                        key_type                %i 12
 
1127
                        key_hidden              %i 0
 
1128
                        %) /*key*/
 
1129
 
 
1130
                key                     %% (%
 
1131
                        key_name                "nuc"
 
1132
                        key_type                %i 12
 
1133
                        key_hidden              %i 0
 
1134
                        %) /*key*/
 
1135
 
 
1136
                key                     %% (%
 
1137
                        key_name                "db_name"
 
1138
                        key_type                %i 12
 
1139
                        key_hidden              %i 0
 
1140
                        %) /*key*/
 
1141
 
 
1142
                key                     %% (%
 
1143
                        key_name                "id"
 
1144
                        key_type                %i 12
 
1145
                        key_hidden              %i 0
 
1146
                        %) /*key*/
 
1147
 
 
1148
                key                     %% (%
 
1149
                        key_name                "keywords"
 
1150
                        key_type                %i 12
 
1151
                        key_hidden              %i 0
 
1152
                        %) /*key*/
 
1153
 
 
1154
                key                     %% (%
 
1155
                        key_name                "exclude"
 
1156
                        key_type                %i 12
 
1157
                        key_hidden              %i 0
 
1158
                        %) /*key*/
 
1159
 
 
1160
                key                     %% (%
 
1161
                        key_name                "ali_tuf_dna_work"
 
1162
                        key_type                %i 15
 
1163
                        key_hidden              %i 0
 
1164
                        %) /*key*/
 
1165
 
 
1166
                key                     %% (%
 
1167
                        key_name                "ali_tuf_dna_work/data"
 
1168
                        key_type                %i 12
 
1169
                        key_hidden              %i 0
 
1170
                        %) /*key*/
 
1171
 
 
1172
                key                     %% (%
 
1173
                        key_name                "ali_tuf_pro_work"
 
1174
                        key_type                %i 15
 
1175
                        key_hidden              %i 0
 
1176
                        %) /*key*/
 
1177
 
 
1178
                key                     %% (%
 
1179
                        key_name                "ali_tuf_pro_work/data"
 
1180
                        key_type                %i 12
 
1181
                        key_hidden              %i 0
 
1182
                        %) /*key*/
 
1183
 
 
1184
                key                     %% (%
 
1185
                        key_name                "ali_tuf_pro_1"
 
1186
                        key_type                %i 15
 
1187
                        key_hidden              %i 0
 
1188
                        %) /*key*/
 
1189
 
 
1190
                key                     %% (%
 
1191
                        key_name                "ali_tuf_pro_1/data"
 
1192
                        key_type                %i 12
 
1193
                        key_hidden              %i 0
 
1194
                        %) /*key*/
 
1195
 
 
1196
                key                     %% (%
 
1197
                        key_name                "ali_tuf_pro_3"
 
1198
                        key_type                %i 15
 
1199
                        key_hidden              %i 0
 
1200
                        %) /*key*/
 
1201
 
 
1202
                key                     %% (%
 
1203
                        key_name                "ali_tuf_pro_3/data"
 
1204
                        key_type                %i 12
 
1205
                        key_hidden              %i 0
 
1206
                        %) /*key*/
 
1207
 
 
1208
                key                     %% (%
 
1209
                        key_name                "status"
 
1210
                        key_type                %i 12
 
1211
                        key_hidden              %i 0
 
1212
                        %) /*key*/
 
1213
 
 
1214
                key                     %% (%
 
1215
                        key_name                "aa"
 
1216
                        key_type                %i 12
 
1217
                        key_hidden              %i 0
 
1218
                        %) /*key*/
 
1219
 
 
1220
                key                     %% (%
 
1221
                        key_name                "aa_pro"
 
1222
                        key_type                %i 12
 
1223
                        key_hidden              %i 0
 
1224
                        %) /*key*/
 
1225
 
 
1226
                key                     %% (%
 
1227
                        key_name                "group_name"
 
1228
                        key_type                %i 12
 
1229
                        key_hidden              %i 0
 
1230
                        %) /*key*/
 
1231
 
 
1232
                %) /*key_data*/
 
1233
 
 
1234
        %) /*presets*/
 
1235
 
 
1236
description             "protein datenbank MBI 06/2002"
 
1237
arb_edit                %% (%
 
1238
        top_area_species                "conbac9:1 coneuc9:1 conarc9:1 "
 
1239
        bottom_area_species             ""
 
1240
        %) /*arb_edit*/
 
1241
 
 
1242
awt                     %% (%
 
1243
        dtree                   %% (%
 
1244
                baselinewidth           %i 3
 
1245
                verticaldist            %f 1
 
1246
                autojump                %i 1
 
1247
                greylevel               %i 100
 
1248
                show_circle             %i 0
 
1249
                circle_zoom             %f 1
 
1250
                ellipse                 %i 1
 
1251
                max_size                %f 1.5
 
1252
                show_brackets           %i 1
 
1253
                %) /*dtree*/
 
1254
 
 
1255
        %) /*awt*/
 
1256
 
 
1257
pars                    %% (%
 
1258
        pars_type               %i 0
 
1259
        %) /*pars*/
 
1260
 
 
1261
genetic                 %% (%
 
1262
        kh                      %% (%
 
1263
                nodes                   %f 1.7
 
1264
                maxdepth                %i 15
 
1265
                incdepth                %i 5
 
1266
                static                  %% (%
 
1267
                        enable                  %i 1
 
1268
                        depth0                  %i 2
 
1269
                        depth1                  %i 2
 
1270
                        depth2                  %i 2
 
1271
                        depth3                  %i 2
 
1272
                        depth4                  %i 1
 
1273
                        %) /*static*/
 
1274
 
 
1275
                dynamic                 %% (%
 
1276
                        enable                  %i 1
 
1277
                        start                   %i 100
 
1278
                        maxx                    %i 6
 
1279
                        maxy                    %i 150
 
1280
                        %) /*dynamic*/
 
1281
 
 
1282
                function_type           %i 5
 
1283
                %) /*kh*/
 
1284
 
 
1285
        %) /*genetic*/
 
1286
 
 
1287
focus                   %% (%
 
1288
        tree_name               "tree_prot"
 
1289
        configuration           "tuf_feb05_SS_2"
 
1290
        %) /*focus*/
 
1291
 
 
1292
search                  %% (%
 
1293
        configuration           %% (%
 
1294
                middle_area             "\AFSAI:SAI's\ASCOUNTED_CHARS\ASHELIX_LINE\ASHELIX_PAIRS\ASall295_907rr3\ASall295_907rr5\ASbacr30\AScharpos\ASconarc9\ASconbac9\ASconbacif9\ASconbacselb9\ASconeuc9\ASconeucif9\ASdorgap\ASeucif2r3\ASif230\ASif2metvafil\ASif2mvan\ASif2r3\ASifgap\ASmvif2\ASposvar\AE\AFMore Sequences\ALcharpos\AE\ALtstmram3\ALtaqxpyro\ALtfrbisla\ALtthtmari\ALtcytlyti\ALttaxocel\ALtbadfrag\ALtfibsucc\ALtflbferr\ALtmypgall\ALtmypgeni\ALtmyppneu\ALtmyphomi\ALtslaplat\ALtccyanop\ALtananidu\ALtccryphi\ALtcchlore\ALtcchlrei\ALtcastlon\ALtceuggra\ALtcarabid\ALtcglymax\ALtcnictab\ALtptcnige\ALtstcoral\ALtbacsubt\ALtflxsinu\ALtchfaura\ALthesgiga\ALtclatrac\ALtspcaura\ALtchlvibr\ALtnanexed\ALtwolsucc\ALttibcupr\ALtpsmcepa\ALtsheputr\ALtesccol2\ALtsaltyp2\ALtesccoli\ALtsaltypm\ALtstiaura\ALtdnemasp\ALtthmther\ALtthmaqua\ALtmybtube\ALtcorglut\ALtbrevlin\ALtmiclute\ALtstmramo\ALtstmram2\ALtmsaccha"
 
1295
                %) /*configuration*/
 
1296
 
 
1297
        configuration           %% (%
 
1298
                name                    "charpos"
 
1299
                top_area                "\ASECOLI\AScharpos"
 
1300
                middle_area             "\AFSAI:SAI's\ASCOUNTED_CHARS\ASHELIX_LINE\ASHELIX_PAIRS\ASall295_907rr3\ASall295_907rr5\ASbacr30\ASconarc9\ASconbac9\ASconbacif9\ASconbacselb9\ASconeuc9\ASconeucif9\ASdorgap\ASeucif2r3\ASif230\ASif2metvafil\ASif2mvan\ASif2r3\ASifgap\ASmvif2\ASposvar\AE\AFMore Sequences\ALcharpos\AE\ALtstmram3\ALtaqxpyro\ALtfrbisla\ALtthtmari\ALtcytlyti\ALttaxocel\ALtbadfrag\ALtfibsucc\ALtflbferr\ALtmypgall\ALtmypgeni\ALtmyppneu\ALtmyphomi\ALtslaplat\ALtccyanop\ALtananidu\ALtccryphi\ALtcchlore\ALtcchlrei\ALtcastlon\ALtceuggra\ALtcarabid\ALtcglymax\ALtcnictab\ALtptcnige\ALtstcoral\ALtbacsubt\ALtflxsinu\ALtchfaura\ALthesgiga\ALtclatrac\ALtspcaura\ALtchlvibr\ALtnanexed\ALtwolsucc\ALttibcupr\ALtpsmcepa\ALtsheputr\ALtesccol2\ALtsaltyp2\ALtesccoli\ALtsaltypm\ALtstiaura\ALtdnemasp\ALtthmther\ALtthmaqua\ALtmybtube\ALtcorglut\ALtbrevlin\ALtmiclute\ALtstmramo\ALtstmram2\ALtmsaccha"
 
1301
                %) /*configuration*/
 
1302
 
 
1303
        pattern                 "aagctacct"
 
1304
        case                    %i 1
 
1305
        tu                      %i 1
 
1306
        pat_gaps                %i 1
 
1307
        min_mismatches          %i 0
 
1308
        max_mismatches          %i 0
 
1309
        seq_gaps                %i 1
 
1310
        show                    %i 1
 
1311
        open_folded             %i 1
 
1312
        autoJump                %i 1
 
1313
        probe                   %% (%
 
1314
                case                    %i 1
 
1315
                tu                      %i 1
 
1316
                pat_gaps                %i 1
 
1317
                seq_gaps                %i 1
 
1318
                show                    %i 0
 
1319
                open_folded             %i 1
 
1320
                autoJump                %i 0
 
1321
                reverse                 %i 0
 
1322
                complement              %i 0
 
1323
                exact                   %i 0
 
1324
                %) /*probe*/
 
1325
 
 
1326
        primer                  %% (%
 
1327
                pattern                 "AC-G--TU"
 
1328
                case                    %i 1
 
1329
                tu                      %i 1
 
1330
                pat_gaps                %i 1
 
1331
                min_mismatches          %i 0
 
1332
                max_mismatches          %i 0
 
1333
                seq_gaps                %i 1
 
1334
                show                    %i 0
 
1335
                open_folded             %i 1
 
1336
                autoJump                %i 0
 
1337
                %) /*primer*/
 
1338
 
 
1339
        user1                   %% (%
 
1340
                pattern                 "LVELEnVDHGKTTnGAILVVnEGGRHTPnIREGGR"
 
1341
                case                    %i 1
 
1342
                tu                      %i 0
 
1343
                pat_gaps                %i 1
 
1344
                reverse                 %i 0
 
1345
                complement              %i 0
 
1346
                exact                   %i 0
 
1347
                min_mismatches          %i 0
 
1348
                max_mismatches          %i 1
 
1349
                seq_gaps                %i 1
 
1350
                show                    %i 1
 
1351
                open_folded             %i 1
 
1352
                autoJump                %i 1
 
1353
                %) /*user1*/
 
1354
 
 
1355
        user2                   %% (%
 
1356
                pattern                 "GUT-TAG"
 
1357
                case                    %i 1
 
1358
                tu                      %i 1
 
1359
                pat_gaps                %i 1
 
1360
                reverse                 %i 0
 
1361
                complement              %i 0
 
1362
                exact                   %i 0
 
1363
                min_mismatches          %i 0
 
1364
                max_mismatches          %i 0
 
1365
                seq_gaps                %i 1
 
1366
                show                    %i 0
 
1367
                open_folded             %i 1
 
1368
                autoJump                %i 1
 
1369
                %) /*user2*/
 
1370
 
 
1371
        primer1                 %% (%
 
1372
                pattern                 "GUT-TAG"
 
1373
                case                    %i 1
 
1374
                tu                      %i 1
 
1375
                pat_gaps                %i 1
 
1376
                reverse                 %i 0
 
1377
                complement              %i 0
 
1378
                exact                   %i 0
 
1379
                min_mismatches          %i 0
 
1380
                max_mismatches          %i 0
 
1381
                seq_gaps                %i 1
 
1382
                show                    %i 0
 
1383
                open_folded             %i 1
 
1384
                autoJump                %i 1
 
1385
                %) /*primer1*/
 
1386
 
 
1387
        primer2                 %% (%
 
1388
                pattern                 "GUT-TAG"
 
1389
                case                    %i 1
 
1390
                tu                      %i 1
 
1391
                pat_gaps                %i 1
 
1392
                reverse                 %i 0
 
1393
                complement              %i 0
 
1394
                exact                   %i 0
 
1395
                min_mismatches          %i 0
 
1396
                max_mismatches          %i 0
 
1397
                seq_gaps                %i 1
 
1398
                show                    %i 0
 
1399
                open_folded             %i 1
 
1400
                autoJump                %i 1
 
1401
                %) /*primer2*/
 
1402
 
 
1403
        primer3                 %% (%
 
1404
                pattern                 "GUT-TAG"
 
1405
                case                    %i 1
 
1406
                tu                      %i 1
 
1407
                pat_gaps                %i 1
 
1408
                reverse                 %i 0
 
1409
                complement              %i 0
 
1410
                exact                   %i 0
 
1411
                min_mismatches          %i 0
 
1412
                max_mismatches          %i 0
 
1413
                seq_gaps                %i 1
 
1414
                show                    %i 0
 
1415
                open_folded             %i 1
 
1416
                autoJump                %i 1
 
1417
                %) /*primer3*/
 
1418
 
 
1419
        sig1                    %% (%
 
1420
                pattern                 "GUT-TAG"
 
1421
                case                    %i 1
 
1422
                tu                      %i 1
 
1423
                pat_gaps                %i 1
 
1424
                reverse                 %i 0
 
1425
                complement              %i 0
 
1426
                exact                   %i 0
 
1427
                min_mismatches          %i 0
 
1428
                max_mismatches          %i 0
 
1429
                seq_gaps                %i 1
 
1430
                show                    %i 0
 
1431
                open_folded             %i 1
 
1432
                autoJump                %i 1
 
1433
                %) /*sig1*/
 
1434
 
 
1435
        sig2                    %% (%
 
1436
                pattern                 "GUT-TAG"
 
1437
                case                    %i 1
 
1438
                tu                      %i 1
 
1439
                pat_gaps                %i 1
 
1440
                reverse                 %i 0
 
1441
                complement              %i 0
 
1442
                exact                   %i 0
 
1443
                min_mismatches          %i 0
 
1444
                max_mismatches          %i 0
 
1445
                seq_gaps                %i 1
 
1446
                show                    %i 0
 
1447
                open_folded             %i 1
 
1448
                autoJump                %i 1
 
1449
                %) /*sig2*/
 
1450
 
 
1451
        sig3                    %% (%
 
1452
                pattern                 "GUT-TAG"
 
1453
                case                    %i 1
 
1454
                tu                      %i 1
 
1455
                pat_gaps                %i 1
 
1456
                reverse                 %i 0
 
1457
                complement              %i 0
 
1458
                exact                   %i 0
 
1459
                min_mismatches          %i 0
 
1460
                max_mismatches          %i 0
 
1461
                seq_gaps                %i 1
 
1462
                show                    %i 0
 
1463
                open_folded             %i 1
 
1464
                autoJump                %i 1
 
1465
                %) /*sig3*/
 
1466
 
 
1467
        %) /*search*/
 
1468
 
 
1469
nt                      %% (%
 
1470
        protein_codon_type              %i 1
 
1471
        min_mismatches          %i 0
 
1472
        max_mismatches          %i 0
 
1473
        target_string           ""
 
1474
        itarget_string          ""
 
1475
        primer_target_string            ""
 
1476
        gene_content            ""
 
1477
        nameserver_addid                ""
 
1478
        %) /*nt*/
 
1479
 
 
1480
ARB_EDIT                %% (%
 
1481
        action                  ""
 
1482
        value                   ""
 
1483
        awar                    ""
 
1484
        %) /*ARB_EDIT*/
 
1485
 
 
1486
www                     %% (%
 
1487
        url_0                   %% (%
 
1488
                srt                     ""
 
1489
                desc                    ""
 
1490
                select                  %i 0
 
1491
                %) /*url_0*/
 
1492
 
 
1493
        url_1                   %% (%
 
1494
                srt                     ""
 
1495
                desc                    ""
 
1496
                select                  %i 0
 
1497
                %) /*url_1*/
 
1498
 
 
1499
        url_2                   %% (%
 
1500
                srt                     ""
 
1501
                desc                    ""
 
1502
                select                  %i 0
 
1503
                %) /*url_2*/
 
1504
 
 
1505
        url_3                   %% (%
 
1506
                srt                     ""
 
1507
                desc                    ""
 
1508
                select                  %i 0
 
1509
                %) /*url_3*/
 
1510
 
 
1511
        url_4                   %% (%
 
1512
                srt                     ""
 
1513
                desc                    ""
 
1514
                select                  %i 0
 
1515
                %) /*url_4*/
 
1516
 
 
1517
        url_5                   %% (%
 
1518
                srt                     ""
 
1519
                desc                    ""
 
1520
                select                  %i 0
 
1521
                %) /*url_5*/
 
1522
 
 
1523
        url_6                   %% (%
 
1524
                srt                     ""
 
1525
                desc                    ""
 
1526
                select                  %i 0
 
1527
                %) /*url_6*/
 
1528
 
 
1529
        url_7                   %% (%
 
1530
                srt                     ""
 
1531
                desc                    ""
 
1532
                select                  %i 0
 
1533
                %) /*url_7*/
 
1534
 
 
1535
        url_8                   %% (%
 
1536
                srt                     ""
 
1537
                desc                    ""
 
1538
                select                  %i 0
 
1539
                %) /*url_8*/
 
1540
 
 
1541
        url_9                   %% (%
 
1542
                srt                     ""
 
1543
                desc                    ""
 
1544
                select                  %i 0
 
1545
                %) /*url_9*/
 
1546
 
 
1547
        url_select              %i 0
 
1548
        browser                 "(netscape -remote 'openURL($(URL))' || netscape '$(URL)')&"
 
1549
        %) /*www*/
 
1550
 
 
1551
table_data              %% (%
 
1552
        %) /*table_data*/
 
1553
 
 
1554
merge                   %% (%
 
1555
        remap_species_list              ""
 
1556
        remap_enable            %i 0
 
1557
        %) /*merge*/
 
1558
 
 
1559
submission              %% (%
 
1560
        source                  ""
 
1561
        file                    ""
 
1562
        %) /*submission*/
 
1563
 
 
1564
genom_db                %i 0
 
1565
sai_visualize           %% (%
 
1566
        sai_2_probe             ""
 
1567
        db_field_name           "name"
 
1568
        db_field_width          %i 10
 
1569
        aci_command             ""
 
1570
        selected_probe          ""
 
1571
        %) /*sai_visualize*/
 
1572
 
 
1573
MAUS                    %% (%
 
1574
        excl_acc                ""
 
1575
        %) /*MAUS*/
 
1576
 
 
1577
checks                  %% (%
 
1578
        check                   "fix gene_data"
 
1579
        check                   "del_mark_move_REF"
 
1580
        check                   "fix_dict_compress"
 
1581
        check                   "duplicated_item_colors"
 
1582
        %) /*checks*/
 
1583
 
 
1584
track                   %% (%
 
1585
        ali                     "???"
 
1586
        initials                "westram"
 
1587
        %) /*track*/
 
1588
 
 
1589
secedit                 %% (%
 
1590
        structs                 %% (%
 
1591
                %) /*structs*/
 
1592
 
 
1593
        %) /*secedit*/
 
1594
 
 
1595
extended_data           %% (%
 
1596
        %) /*extended_data*/
 
1597
 
 
1598
configuration_data              %% (%
 
1599
        configuration           %% (%
 
1600
                name                    "default_configuration"
 
1601
                top_area                ""
 
1602
                middle_area             "\AGSAI-Maingroup\AE\AFMore Sequences\AE\AGEF-Tu / EF-1a\AGBacteria EF-Tu\ALBctFra12\ALCytLyti6\ALTaxOcell\ALStrRamo3\ALStrCoel9\AE\AGEukarya EF-Tu\ALMucRacem\ALMucRace2\ALMucRace3\ALAbdGlauc\ALSacCere5\ALCddAlbic\AE\AE"
 
1603
                %) /*configuration*/
 
1604
 
 
1605
        %) /*configuration_data*/
 
1606