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  • Committer: Bazaar Package Importer
  • Author(s): Aaron M. Ucko
  • Date: 2005-03-27 12:00:15 UTC
  • mfrom: (2.1.2 hoary)
  • Revision ID: james.westby@ubuntu.com-20050327120015-embhesp32nj73p9r
Tags: 6.1.20041020-3
http://bugs.debian.org/295110
* Fix FTBFS under GCC 4.0 caused by inconsistent use of "static" on
  functions.  (Closes: #295110.)
* Add a watch file, now that we can.  (Upstream's layout needs version=3.)

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demo/seqget.c
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        {
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                if (gi)
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                {
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                        ErrPostEx(SEV_FATAL,0,0, "Use only one of -g or -s");
 
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                        ErrPostEx(SEV_FATAL, 1,0, "Use only one of -g or -s");
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                        return 1;
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                }
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                sip = SeqIdParse((CharPtr)(myargs[4].strvalue));
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                if (sip == NULL)
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                {
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                        ErrPostEx(SEV_FATAL,0,0, "Can't parse [%s]",
 
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                        ErrPostEx(SEV_FATAL, 1,0, "Can't parse [%s]",
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                                (CharPtr)(myargs[4].strvalue));
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                        return 1;
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                }
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        }
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        else if (! gi)
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        {
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                ErrPostEx(SEV_FATAL,0,0, "Must supply one of -g or -s");
 
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                ErrPostEx(SEV_FATAL, 1,0, "Must supply one of -g or -s");
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                return 1;
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        }
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        */
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        if ( !EntrezInit("SeqGet", FALSE, &is_network) ) {
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                ErrPostEx(SEV_FATAL,0,0, "Can't initialize Entrez");
 
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                ErrPostEx(SEV_FATAL, 1,0, "Can't initialize Entrez");
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                return 1;
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        }
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                {
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                        EntrezFini();
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                        SeqIdPrint(sip, tbuf, PRINTID_FASTA_SHORT);
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                        ErrPostEx(SEV_FATAL,0,0, "Couldn't find SeqId [%s]", tbuf);
 
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                        ErrPostEx(SEV_FATAL, 1,0, "Couldn't find SeqId [%s]", tbuf);
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                        return 1;
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                }
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                SeqIdFree(sip);
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        if (sep == NULL)
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        {
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                ErrPostEx(SEV_FATAL,0,0,"Could not retrieve entry for GI %ld", (long)gi);
 
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                ErrPostEx(SEV_FATAL, 1,0,"Could not retrieve entry for GI %ld", (long)gi);
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                return 1;
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        }
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                        asnout = AsnIoOpen((CharPtr)myargs[0].strvalue, outmode);
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                        if (asnout == NULL)
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                        {
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                         ErrPostEx(SEV_FATAL,0,0, "Could not open [%s] for asn output",
 
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                         ErrPostEx(SEV_FATAL, 1,0, "Could not open [%s] for asn output",
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                            myargs[0].strvalue);
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                         return 1;
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                        }
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                        fp = FileOpen((CharPtr)myargs[0].strvalue, outmode);
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                        if (fp == NULL)
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                        {
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                         ErrPostEx(SEV_FATAL,0,0, "Could not open [%s] for asn output",
 
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                         ErrPostEx(SEV_FATAL, 1,0, "Could not open [%s] for asn output",
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                            myargs[0].strvalue);
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                         return 1;
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                        }