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- Committer: Package Import Robot
- Date: 2013-11-20 22:41:36 UTC
- mfrom: (1.2.2)
- Revision ID: package-import@ubuntu.com-20131120224136-tzx7leh606fqnckm
* [e65b919] Imported Upstream version 0~20131119.git7162cf0
* [f7bddd4] Fix some problems, introduced by upstream recently.
* [3616dfc] Use wrap-and-sort script.
* [7e92030] Ignore quilt dir
* [f7bddd4] Fix some problems, introduced by upstream recently.
* [3616dfc] Use wrap-and-sort script.
* [7e92030] Ignore quilt dir
- files added:
- .pc/fix_FTBFS_timer.patch
- .pc/fix_FTBFS_timer.patch/src
- .pc/fix_FTBFS_timer.patch/src/USER-OMP
- .pc/fix_format_not_a_string.patch
- .pc/fix_format_not_a_string.patch/src
- examples/ASPHERE
- examples/ASPHERE/box
- examples/ASPHERE/dimer
- examples/ASPHERE/ellipsoid
- examples/ASPHERE/line
- examples/ASPHERE/poly
- examples/ASPHERE/star
- examples/ASPHERE/tri
- examples/KAPPA
- examples/USER/atc/cauchy_born
- examples/USER/atc/drift_diffusion
- examples/USER/atc/elastic
- examples/USER/atc/fluids
- examples/USER/atc/mesh
- examples/USER/atc/molecule
- examples/USER/atc/thermal
- examples/USER/atc/two_temperature
- examples/USER/lb
- examples/USER/lb/confined_colloid
- examples/USER/lb/dragforce
- examples/USER/lb/fourspheres
- examples/USER/lb/microrheology
- examples/USER/lb/planewall
- examples/USER/lb/polymer
- examples/USER/misc/basal
- examples/USER/misc/ti
- examples/VISCOSITY
- examples/reax/Fluorographene
- examples/voronoi
- regress
- regress/melt
- regress/min
- src/MISC
- src/USER-LB
- tools/moltemplate/common/amber
- tools/moltemplate/common/images
- tools/moltemplate/examples/CG_biomolecules
- tools/moltemplate/examples/CG_biomolecules/membrane+protein
- tools/moltemplate/examples/CG_biomolecules/membrane+protein/images
- tools/moltemplate/examples/CG_biomolecules/membrane+protein/images/membrane+protein_t=0ps_top_LR.jpg
- tools/moltemplate/examples/CG_biomolecules/membrane+protein/moltemplate_files
- tools/moltemplate/examples/CG_biomolecules/membrane+protein/moltemplate_files/calc_table
- tools/moltemplate/examples/CG_biomolecules/membrane+protein/moltemplate_files/calc_table/version_charmm_cutoff
- tools/moltemplate/examples/CG_biomolecules/membrane_BranniganPRE2005
- tools/moltemplate/examples/CG_biomolecules/membrane_BranniganPRE2005/images
- tools/moltemplate/examples/CG_biomolecules/membrane_BranniganPRE2005/moltemplate_files
- tools/moltemplate/examples/CG_biomolecules/membrane_BranniganPRE2005/moltemplate_files/calc_table
- tools/moltemplate/examples/CG_biomolecules/membrane_BranniganPRE2005/moltemplate_files/calc_table/version_charmm_cutoff
- tools/moltemplate/examples/CG_biomolecules/membrane_BranniganPRE2005/moltemplate_files/table_int.dat
- tools/moltemplate/examples/CG_biomolecules/protein_folding_examples
- tools/moltemplate/examples/CG_biomolecules/protein_folding_examples/1bead+chaperone
- tools/moltemplate/examples/CG_biomolecules/protein_folding_examples/1bead+chaperone/frustrated
- tools/moltemplate/examples/CG_biomolecules/protein_folding_examples/1bead+chaperone/frustrated+chaperonin
- tools/moltemplate/examples/CG_biomolecules/protein_folding_examples/1bead+chaperone/frustrated+chaperonin/images
- tools/moltemplate/examples/CG_biomolecules/protein_folding_examples/1bead+chaperone/frustrated+chaperonin/images/for_visualization
- tools/moltemplate/examples/CG_biomolecules/protein_folding_examples/1bead+chaperone/frustrated+chaperonin/images/for_visualization/psf_file_created_by_topotools
- tools/moltemplate/examples/CG_biomolecules/protein_folding_examples/1bead+chaperone/frustrated+chaperonin/moltemplate_files
- tools/moltemplate/examples/CG_biomolecules/protein_folding_examples/1bead+chaperone/frustrated+chaperonin/moltemplate_files/generate_tables
- tools/moltemplate/examples/CG_biomolecules/protein_folding_examples/1bead+chaperone/frustrated+minichaperone
- tools/moltemplate/examples/CG_biomolecules/protein_folding_examples/1bead+chaperone/frustrated+minichaperone/images
- tools/moltemplate/examples/CG_biomolecules/protein_folding_examples/1bead+chaperone/frustrated+minichaperone/images/for_visualization
- tools/moltemplate/examples/CG_biomolecules/protein_folding_examples/1bead+chaperone/frustrated+minichaperone/images/for_visualization/psf_file_created_by_topotools
- tools/moltemplate/examples/CG_biomolecules/protein_folding_examples/1bead+chaperone/frustrated+minichaperone/moltemplate_files
- tools/moltemplate/examples/CG_biomolecules/protein_folding_examples/1bead+chaperone/frustrated+minichaperone/moltemplate_files/generate_tables
- tools/moltemplate/examples/CG_biomolecules/protein_folding_examples/1bead+chaperone/frustrated/images
- tools/moltemplate/examples/CG_biomolecules/protein_folding_examples/1bead+chaperone/frustrated/images/for_visualization
- tools/moltemplate/examples/CG_biomolecules/protein_folding_examples/1bead+chaperone/frustrated/images/for_visualization/psf_file_created_by_topotools
- tools/moltemplate/examples/CG_biomolecules/protein_folding_examples/1bead+chaperone/frustrated/moltemplate_files
- tools/moltemplate/examples/CG_biomolecules/protein_folding_examples/1bead+chaperone/frustrated/moltemplate_files/generate_tables
- tools/moltemplate/examples/CG_biomolecules/protein_folding_examples/1bead+chaperone/unfrustrated
- tools/moltemplate/examples/CG_biomolecules/protein_folding_examples/1bead+chaperone/unfrustrated+chaperonin
- tools/moltemplate/examples/CG_biomolecules/protein_folding_examples/1bead+chaperone/unfrustrated+chaperonin/images
- tools/moltemplate/examples/CG_biomolecules/protein_folding_examples/1bead+chaperone/unfrustrated+chaperonin/images/for_visualization
- tools/moltemplate/examples/CG_biomolecules/protein_folding_examples/1bead+chaperone/unfrustrated+chaperonin/images/for_visualization/psf_file_created_by_topotools
- tools/moltemplate/examples/CG_biomolecules/protein_folding_examples/1bead+chaperone/unfrustrated+chaperonin/moltemplate_files
- tools/moltemplate/examples/CG_biomolecules/protein_folding_examples/1bead+chaperone/unfrustrated+chaperonin/moltemplate_files/generate_tables
- tools/moltemplate/examples/CG_biomolecules/protein_folding_examples/1bead+chaperone/unfrustrated/images
- tools/moltemplate/examples/CG_biomolecules/protein_folding_examples/1bead+chaperone/unfrustrated/images/for_visualization
- tools/moltemplate/examples/CG_biomolecules/protein_folding_examples/1bead+chaperone/unfrustrated/images/for_visualization/psf_file_created_by_topotools
- tools/moltemplate/examples/CG_biomolecules/protein_folding_examples/1bead+chaperone/unfrustrated/moltemplate_files
- tools/moltemplate/examples/CG_biomolecules/protein_folding_examples/1beadProtSci2010
- tools/moltemplate/examples/CG_biomolecules/protein_folding_examples/1beadProtSci2010/README_setup.sh
- tools/moltemplate/examples/CG_biomolecules/protein_folding_examples/1beadProtSci2010/images
- tools/moltemplate/examples/CG_biomolecules/protein_folding_examples/1beadProtSci2010/images/for_visualization
- tools/moltemplate/examples/CG_biomolecules/protein_folding_examples/1beadProtSci2010/images/for_visualization/psf_file_created_by_topotools
- tools/moltemplate/examples/CG_biomolecules/protein_folding_examples/1beadProtSci2010/moltemplate_files
- tools/moltemplate/examples/CG_biomolecules/protein_folding_examples/1beadProtSci2010/moltemplate_files/other_implementations
- tools/moltemplate/examples/CG_biomolecules/protein_folding_examples/1beadProtSci2010/moltemplate_files/other_implementations/charmm
- tools/moltemplate/examples/CG_biomolecules/protein_folding_examples/1beadProtSci2010/moltemplate_files/other_implementations/class2
- tools/moltemplate/examples/CG_biomolecules/vesicle_Brannigan2005+Bellesia2010
- tools/moltemplate/examples/CG_biomolecules/vesicle_Brannigan2005+Bellesia2010/images
- tools/moltemplate/examples/CG_biomolecules/vesicle_Brannigan2005+Bellesia2010/moltemplate_files
- tools/moltemplate/examples/CG_biomolecules/vesicle_Brannigan2005+Bellesia2010/moltemplate_files/calc_table
- tools/moltemplate/examples/CG_biomolecules/vesicle_Brannigan2005+Bellesia2010/moltemplate_files/calc_table/version_charmm_cutoff
- tools/moltemplate/examples/CG_biomolecules/vesicle_Brannigan2005+Bellesia2010/packmol_files
- tools/moltemplate/examples/CG_biomolecules/vesicle_Brannigan2005+Bellesia2010/packmol_files/DLPC.xyz
- tools/moltemplate/examples/CG_biomolecules/vesicle_Brannigan2005+Bellesia2010/packmol_files/DPPC.xyz
- tools/moltemplate/examples/all_atom_examples/AMBER_force_field_examples
- tools/moltemplate/examples/all_atom_examples/AMBER_force_field_examples/waterTIP3P+isobutane
- tools/moltemplate/examples/all_atom_examples/AMBER_force_field_examples/waterTIP3P+isobutane/images
- tools/moltemplate/examples/all_atom_examples/AMBER_force_field_examples/waterTIP3P+isobutane/moltemplate_files
- tools/moltemplate/examples/all_atom_examples/aluminum_crystal_strain
- tools/moltemplate/examples/all_atom_examples/aluminum_crystal_strain/images
- tools/moltemplate/examples/all_atom_examples/aluminum_crystal_strain/moltemplate_files
- tools/moltemplate/examples/all_atom_examples/convert_LAMMPS_to_LT_examples/cnad-cnt/README_FIRST.TXT
- tools/moltemplate/examples/all_atom_examples/ice_crystal
- tools/moltemplate/examples/all_atom_examples/ice_crystal/images
- tools/moltemplate/examples/all_atom_examples/ice_crystal/moltemplate_files
- tools/moltemplate/examples/silly
- tools/moltemplate/examples/silly/pyramids_vs_gravity
- tools/moltemplate/examples/silly/pyramids_vs_gravity/images
- tools/moltemplate/examples/silly/pyramids_vs_gravity/moltemplate_files
- tools/moltemplate/examples/silly/sierpinski
- tools/moltemplate/examples/silly/sierpinski/images
- tools/moltemplate/examples/silly/sierpinski/moltemplate_files
- tools/moltemplate/examples/silly/sierpinski/moltemplate_files/elegant_inefficient_version
- tools/moltemplate/examples/silly/sierpinski/moltemplate_files/elegant_inefficient_version/al_cell.lt
- tools/moltemplate/src/nbody_alternate_symmetry
- tools/msi2lmp/frc_files
- tools/msi2lmp/test/reference
- tools/polybond
- tools/xmgrace
- files removed:
- bench/log.9Jan12.chain.fixed.linux.1
- examples/USER/atc/bar1d_thermal
- examples/USER/atc/bar1d_two_temperature
- tools/moltemplate/common/tip3p_attempts
- tools/moltemplate/examples/CG_membrane_examples
- tools/moltemplate/examples/CG_membrane_examples/membrane+protein
- tools/moltemplate/examples/CG_membrane_examples/membrane+protein/images
- tools/moltemplate/examples/CG_membrane_examples/membrane+protein/images/for_visualization
- tools/moltemplate/examples/CG_membrane_examples/membrane+protein/images/for_visualization/psf_file_created_by_topotools
- tools/moltemplate/examples/CG_membrane_examples/membrane+protein/moltemplate_files
- tools/moltemplate/examples/CG_membrane_examples/membrane+protein/moltemplate_files/calc_table
- tools/moltemplate/examples/CG_membrane_examples/membrane+protein/moltemplate_files/calc_table/version_charmm_cutoff
- tools/moltemplate/examples/CG_membrane_examples/membrane_BranniganPRE2005
- tools/moltemplate/examples/CG_membrane_examples/membrane_BranniganPRE2005/images
- tools/moltemplate/examples/CG_membrane_examples/membrane_BranniganPRE2005/moltemplate_files
- tools/moltemplate/examples/CG_membrane_examples/membrane_BranniganPRE2005/moltemplate_files/generate_tables
- tools/moltemplate/examples/CG_membrane_examples/membrane_BranniganPRE2005/moltemplate_files/version_charmm_cutoff
- tools/moltemplate/examples/CG_misc/2bead_heteropolymer/moltemplate_files/simplified_version_one_residue
- tools/moltemplate/examples/CG_misc/translocation/images/for_visualization
- tools/moltemplate/examples/CG_misc/translocation/images/for_visualization/psf_file_created_by_topotools
- tools/moltemplate/examples/CG_protein_folding_examples
- tools/moltemplate/examples/CG_protein_folding_examples/1bead+chaperone
- tools/moltemplate/examples/CG_protein_folding_examples/1bead+chaperone/frustrated
- tools/moltemplate/examples/CG_protein_folding_examples/1bead+chaperone/frustrated+chaperonin
- tools/moltemplate/examples/CG_protein_folding_examples/1bead+chaperone/frustrated+chaperonin/images
- tools/moltemplate/examples/CG_protein_folding_examples/1bead+chaperone/frustrated+chaperonin/images/for_visualization
- tools/moltemplate/examples/CG_protein_folding_examples/1bead+chaperone/frustrated+chaperonin/images/for_visualization/psf_file_created_by_topotools
- tools/moltemplate/examples/CG_protein_folding_examples/1bead+chaperone/frustrated+chaperonin/moltemplate_files
- tools/moltemplate/examples/CG_protein_folding_examples/1bead+chaperone/frustrated+chaperonin/moltemplate_files/generate_tables
- tools/moltemplate/examples/CG_protein_folding_examples/1bead+chaperone/frustrated+minichaperone
- tools/moltemplate/examples/CG_protein_folding_examples/1bead+chaperone/frustrated+minichaperone/images
- tools/moltemplate/examples/CG_protein_folding_examples/1bead+chaperone/frustrated+minichaperone/images/for_visualization
- tools/moltemplate/examples/CG_protein_folding_examples/1bead+chaperone/frustrated+minichaperone/images/for_visualization/psf_file_created_by_topotools
- tools/moltemplate/examples/CG_protein_folding_examples/1bead+chaperone/frustrated+minichaperone/moltemplate_files
- tools/moltemplate/examples/CG_protein_folding_examples/1bead+chaperone/frustrated+minichaperone/moltemplate_files/generate_tables
- tools/moltemplate/examples/CG_protein_folding_examples/1bead+chaperone/frustrated+minichaperone/moltemplate_files/output_ttree
- tools/moltemplate/examples/CG_protein_folding_examples/1bead+chaperone/frustrated/images
- tools/moltemplate/examples/CG_protein_folding_examples/1bead+chaperone/frustrated/images/for_visualization
- tools/moltemplate/examples/CG_protein_folding_examples/1bead+chaperone/frustrated/images/for_visualization/psf_file_created_by_topotools
- tools/moltemplate/examples/CG_protein_folding_examples/1bead+chaperone/frustrated/moltemplate_files
- tools/moltemplate/examples/CG_protein_folding_examples/1bead+chaperone/frustrated/moltemplate_files/generate_tables
- tools/moltemplate/examples/CG_protein_folding_examples/1bead+chaperone/unfrustrated
- tools/moltemplate/examples/CG_protein_folding_examples/1bead+chaperone/unfrustrated+chaperonin
- tools/moltemplate/examples/CG_protein_folding_examples/1bead+chaperone/unfrustrated+chaperonin/images
- tools/moltemplate/examples/CG_protein_folding_examples/1bead+chaperone/unfrustrated+chaperonin/images/for_visualization
- tools/moltemplate/examples/CG_protein_folding_examples/1bead+chaperone/unfrustrated+chaperonin/images/for_visualization/psf_file_created_by_topotools
- tools/moltemplate/examples/CG_protein_folding_examples/1bead+chaperone/unfrustrated+chaperonin/moltemplate_files
- tools/moltemplate/examples/CG_protein_folding_examples/1bead+chaperone/unfrustrated+chaperonin/moltemplate_files/generate_tables
- tools/moltemplate/examples/CG_protein_folding_examples/1bead+chaperone/unfrustrated/images
- tools/moltemplate/examples/CG_protein_folding_examples/1bead+chaperone/unfrustrated/images/for_visualization
- tools/moltemplate/examples/CG_protein_folding_examples/1bead+chaperone/unfrustrated/images/for_visualization/psf_file_created_by_topotools
- tools/moltemplate/examples/CG_protein_folding_examples/1bead+chaperone/unfrustrated/moltemplate_files
- tools/moltemplate/examples/CG_protein_folding_examples/1beadProtSci2010
- tools/moltemplate/examples/CG_protein_folding_examples/1beadProtSci2010/images
- tools/moltemplate/examples/CG_protein_folding_examples/1beadProtSci2010/images/for_visualization
- tools/moltemplate/examples/CG_protein_folding_examples/1beadProtSci2010/images/for_visualization/psf_file_created_by_topotools
- tools/moltemplate/examples/CG_protein_folding_examples/1beadProtSci2010/moltemplate_files
- tools/moltemplate/examples/CG_protein_folding_examples/1beadProtSci2010/moltemplate_files/versions_with_comments
- tools/moltemplate/examples/all_atom_examples/heteropolymer_melt_attempt1
- tools/moltemplate/examples/all_atom_examples/heteropolymer_melt_attempt1/images
- tools/moltemplate/examples/all_atom_examples/heteropolymer_melt_attempt1/moltemplate_files
- tools/moltemplate/examples/all_atom_examples/heteropolymer_melt_attempt1/moltemplate_files/system.lt
- tools/moltemplate/examples/all_atom_examples/read_PDB_file_examples/waterSPCE_from_PDBfile/for_visualization
- tools/moltemplate/examples/all_atom_examples/read_PDB_file_examples/waterSPCE_from_PDBfile/for_visualization/psf_file_created_by_topotools
- tools/msi2lmp/biosym_frc_files
- tools/msi2lmp/test/correct
- files modified:
- .pc/applied-patches
added
removed
tools/moltemplate/examples/CG_biomolecules/protein_folding_examples/1bead+chaperone/unfrustrated+chaperonin/run.in.min
