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  • Committer: Bazaar Package Importer
  • Author(s): Charles Plessy
  • Date: 2009-03-10 07:19:11 UTC
  • mfrom: (1.2.3 upstream)
  • Revision ID: james.westby@ubuntu.com-20090310071911-fukqzw54pyb1f0bd
Tags: 1.6.0-2
https://launchpad.net/bugs/324001
* Removed patch system (not used):
  - removed instuctions in debian/rules;
  - removed quilt from Build-Depends in debian/control.
* Re-enabled tests:
  - uncommented test command in debian/rules;
  - uncommented previously missing build-dependencies in debian/control.
  - Re-enabled tests and uncommented build-dependencies accordingly.
* Removed libmodule-build-perl and libtest-harness-perl from
  Build-Depends-Indep (provided by perl-modules).
* Better cleaning of empty directories using find -type d -empty -delete
  instead of rmdir in debian/rules (LP: #324001).

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Bio/Location/Split.pm
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# $Id: Split.pm,v 1.46.4.3 2006/10/31 22:26:31 cjfields Exp $
 
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# $Id: Split.pm 14964 2008-10-26 05:03:15Z cjfields $
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#
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# BioPerl module for Bio::Location::Split
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# Cared for by Jason Stajich <jason@bioperl.org>
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    use Bio::Location::Split;
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    my $splitlocation = new Bio::Location::Split();
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    $splitlocation->add_sub_Location(new Bio::Location::Simple(-start=>1,
 
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    my $splitlocation = Bio::Location::Split->new();
 
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    $splitlocation->add_sub_Location(Bio::Location::Simple->new(-start=>1,
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                                                               -end=>30,
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                                                               -strand=>1));
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    $splitlocation->add_sub_Location(new Bio::Location::Simple(-start=>50,
 
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    $splitlocation->add_sub_Location(Bio::Location::Simple->new(-start=>50,
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                                                               -end=>61,
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                                                               -strand=>1));   
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    my @sublocs = $splitlocation->sub_Location();
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=cut
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sub seq_id {
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    my ($self, $seqid) = @_;
 
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    my $self = shift;
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    if(! $self->is_remote()) {
 
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    if(@_ && !$self->is_remote()) {
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        foreach my $subloc ($self->sub_Location(0)) {
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            $subloc->seq_id($seqid) if ! $subloc->is_remote();
 
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            $subloc->seq_id(@_) if !$subloc->is_remote();
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        }
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    }
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    return $self->SUPER::seq_id($seqid);
 
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    return $self->SUPER::seq_id(@_);
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}
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=head2 coordinate_policy
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    return $str;
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}
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=head2 valid_Location
 
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 Title   : valid_Location
 
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 Usage   : if ($location->valid_location) {...};
 
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 Function: boolean method to determine whether location is considered valid
 
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           (has minimum requirements for Simple implementation)
 
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 Returns : Boolean value: true if location is valid, false otherwise
 
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 Args    : none
 
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=cut
 
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# we'll probably need to override the RangeI methods since our locations will
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# not be contiguous.
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1;
 
 
b'\\ No newline at end of file'
 
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1;