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  • Committer: Bazaar Package Importer
  • Author(s): Charles Plessy
  • Date: 2009-03-10 07:19:11 UTC
  • mfrom: (1.2.3 upstream)
  • Revision ID: james.westby@ubuntu.com-20090310071911-fukqzw54pyb1f0bd
Tags: 1.6.0-2
https://launchpad.net/bugs/324001
* Removed patch system (not used):
  - removed instuctions in debian/rules;
  - removed quilt from Build-Depends in debian/control.
* Re-enabled tests:
  - uncommented test command in debian/rules;
  - uncommented previously missing build-dependencies in debian/control.
  - Re-enabled tests and uncommented build-dependencies accordingly.
* Removed libmodule-build-perl and libtest-harness-perl from
  Build-Depends-Indep (provided by perl-modules).
* Better cleaning of empty directories using find -type d -empty -delete
  instead of rmdir in debian/rules (LP: #324001).

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t/SeqIO/fastq.t
 
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# -*-Perl-*- Test Harness script for Bioperl
 
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# $Id: fastq.t 15112 2008-12-08 18:12:38Z sendu $
 
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use strict;
 
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BEGIN {
 
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    use lib '.';
 
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    use Bio::Root::Test;
 
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    test_begin(-tests => 5);
 
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        use_ok('Bio::SeqIO::fastq');
 
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}
 
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my $DEBUG = test_debug();
 
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# bug 2335
 
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my $in_qual  = Bio::SeqIO->new('-file' => test_input_file('bug2335.fastq'),
 
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                                                           '-format' => 'fastq',
 
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                                                          );
 
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isa_ok($in_qual, 'Bio::SeqIO');
 
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my $qual = $in_qual->next_seq();
 
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isa_ok($qual, 'Bio::Seq::Quality');
 
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my @quals = @{$qual->qual()};
 
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is(@quals, 111, 'number of qual values');
 
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my $qualslice = join(',',@quals[0..10]);
 
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is($qualslice, '31,23,32,23,31,22,27,28,32,24,25', 'qual slice');