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Viewing changes to t/data/map_hem/HEM3-HEM12.fa

  • Committer: Bazaar Package Importer
  • Author(s): Charles Plessy
  • Date: 2009-03-10 07:19:11 UTC
  • mfrom: (1.2.3 upstream)
  • Revision ID: james.westby@ubuntu.com-20090310071911-fukqzw54pyb1f0bd
Tags: 1.6.0-2
* Removed patch system (not used):
  - removed instuctions in debian/rules;
  - removed quilt from Build-Depends in debian/control.
* Re-enabled tests:
  - uncommented test command in debian/rules;
  - uncommented previously missing build-dependencies in debian/control.
  - Re-enabled tests and uncommented build-dependencies accordingly.
* Removed libmodule-build-perl and libtest-harness-perl from
  Build-Depends-Indep (provided by perl-modules).
* Better cleaning of empty directories using find -type d -empty -delete
  instead of rmdir in debian/rules (LP: #324001).

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1
>SGD_Scer_YDL205C HEM3 "Phorphobilinogen deaminase, catalyzes the conversion of 4-porphobilinogen to hydroxymethylbilane, the third step in the heme biosynthetic pathway; localizes to both the cytoplasm and nucleus; expression is regulated by Hap2p-Hap3p"
 
2
AGTACGTGTGTATTTACCAACTACAAATTTATCTAGATTTTCTTCGCTTTTCTTTTTTTC
 
3
TATTGTTCTAGATATTAATACGGGATGAGAAGAACAGAATATTCAAAATCTAATACAGCC
 
4
CTGTACCATGCAAACACGAGCGTCAATCTGCCAATGACCTTGAATTCAGGCTATGTGTAG
 
5
CAATAATACAGATAGTTAGTAGCCTCGTTTATATAAAGCGTTCCTTTACTTTTTCATTTT
 
6
CTTTCTTTTTTTATGTTTGATTTTTTTACTTTTTCACTTTAAAAAATTGCTGAAATTTTC
 
7
GTAGCCAAAAAAAAGACCTTCATTGCTTACTCATCGGTTTCTTATTGGTCAGACGCTCCC
 
8
CAGGGTCAATTGACAAGGAGAGAAGGAATGTTATATGGGAATTGCTGCGTAAAGATGGTC
 
9
AAAAATCCTGGACTGCCGTACGAACGACAATGTAAGGATGACTGCATTAGCCAGAAAGAC
 
10
ATCTTTACCCCCGGTGCTGCCAGGGAGCAAAATAATTACGAAAAGTGGACGCAAAGTTAA
 
11
CTTAAACTACAAGGGTAGCAGCAGAATGTGTCGGTGGTACCGGTGTGATAATGCCCCATT
 
12
TGAGATGCTTGTAATTGTGGCCTAGCAATAAGAACGCAAGGCGTTTTTGTTGAAAGGAGA
 
13
ACAAGGTTAGACGGTGACGTTTAGGCGCATAGGCAATCTCCCCTTATTGTTCACCCTTAT
 
14
TTCCACCCTCAAACGATAAAGCTTGCTACTTTGATGAAAAAAATATATAAAAGGGATTGA
 
15
AAAGCAGATCAATTATGTAGCAATAGTAGTAATAACTTGTTCAATTGCTTGTCTCAACTT
 
16
GCCACAAACTATCATCAACA
 
17
>MIT_Spar_c429_3020 YDL205C 5' untranslated region, Contig c429 77420 - 79419(revcom), 2000 bp (revcom)
 
18
AGTACGTGTGTATTTATCAACTACAAAATTTATCTAGATTTTCTTGCCTTTTCCTTTTTC
 
19
TATTGTTCTAGATACTAATACGGGATGAGAAGAACAGAATATTCAAAATGTAAAACAGCC
 
20
CTGTACCATGCAAACACGAGCCTCAATCTGCCAATGACCTTGAATCCAAGCTATGTGTAG
 
21
CAATAATACAGATGATTGATTGGCGTCGTTTATATAAAGCGTTCCTTCATTTTTTTCATT
 
22
TTCTTTCTTTTTTTATGTTTGATTTTTTACTTTTTCACTTTTGAAAACTGCTGAAATTTT
 
23
CGTAGCAAAAAAAAAAAGACCTTCATTGCTTACTCATCGGTTTCTTATTGGTCAGACGCT
 
24
CCCCAGGGTCAATTGACAAGGAGAGAAGGAATGTTACATCCAGGAATTGCGACATAAAGA
 
25
TGTCCAAGAAGTCTGAACTGTCATACGAATGGCTATGCAAGGAGGATAGTACTGGTCAAG
 
26
AAGACATCTTACCCCCGGTGCTGTCAGGGAGCAAAAAAATGACAAAAGTGGACGCAAAGT
 
27
TAACTTGAACTACAAGGGTAGCAACAGAATGTCGGTGGTACCGGATGTGACAAAGCTCAC
 
28
TTGAGGTGCTTCTTGTTGCGGCATAGCAATAAGAGCGCAAGGCGTTTTTATGGAAAGGAG
 
29
AGCGAGGTTAGAGGGTGACGTTTAGGCGCATAGGCAACCTCCCCTTATTGTTCACCCTTA
 
30
TTTCCACCCTCAAACGATAAAGCTTGTCTACATTGATGAAAAAAATGTATAAAAGGGATT
 
31
GAAAAGCCGATCATGTGTGTAGCAATAGTAGTAGTTATACTTGTTCAATTGCTTGCTTGC
 
32
ACTTTTCCAAAAACTACCAC
 
33
>MIT_Smik_c193_2483 YDL205C 5' untranslated region, Contig c193 6380 - 8379(revcom), 2000 bp (revcom)
 
34
AGTACGTGTGTATTTACCAACTATAAAATTTTACCTAGACTATCTGGCCTTTTTCTTTTT
 
35
TCTATTGTTCTAGATACTAATACGGGATGAAAAGAACAGAATATTCAAAAAGTAATACAG
 
36
CCCTGTACCATTCAAACACGAGCGCCAATTTGCCAATGAACTTGAAATCCAGCTATGCGT
 
37
AGCGATAATACAGATGATTGTTTGATGTCGTTTATATTAAGCGTTCCTTCAGTTTTTCTC
 
38
ATTTTCTTTCTTTTTCTATGTTTTATTTTTCACTTTTTCACTTTTGAAAATTGCTGAAAT
 
39
TTTCGTAACAAAAAAAGAGGCCTTCATTGCTTACTCATCGTTATCTTATTGGTTAAAATC
 
40
CCCAGCGACAATGTACAAGGAGAGAAGAAATGATATGTCTGGGAATTGCAGTTTGAAGAT
 
41
ATCCAAAGAGTTTTGAAGTGCCATACGAGCAACCACGTGAGAAGTAGAGCCTTAACAGAA
 
42
AATTCATCTTACCCCTAGTACTGCCAGGGAGGAACTAAACCTAAGAACTAGTGTTAACTT
 
43
GACTTGAACTGCAAGGGTAGCGACGGCGTATGTCGGTGGTACCGGATATGGCAAGAGCCC
 
44
ATTTGAGCTGCTTGTTCTTGTGACATACTATTAAGAGCGCAAGGCGTTTATGGAAAGGAG
 
45
GACAAGGTCAGAGGATGACGTTTAAGCGCATAGGCAATCTCCCCTTATTATTCACCCTTA
 
46
TTTCCACCCTCAAACGATAAAGCTTGCTGCGCTGTTGAAAAGTATATAAAAGGGATAGAA
 
47
AAGCAGAGCAATTATAATTTAGTAGAATAGCTTATTCTATCGTTAACTTGTTGAAAGGAT
 
48
CAGATTATTATCAAGATGAA
 
49
>MIT_Sbay_c841_3215 YDL205C 5' untranslated region, Contig c841 7323 - 9322(revcom), 2000 bp (revcom)
 
50
AGTATGTGTATATTTACCAACTATAGAGTATATCTAGTATTTTTTTTCCTTCTTCTTTTT
 
51
CTATTGTTCTAGATGCTAATATGGGATGAGTAGAACAAAATATTCAAAACGCAATACAGC
 
52
CCTGTACCATTCAAATACGAACGCCAATCTGCCAATGACCTTGAAATCAAGTTATGTGCC
 
53
GCGATAATACAATCTTTTGGCCTATATCGTTTAAATAAGCGTTCCTTTAATTTTTCGGTT
 
54
TCTTTCTTTTTTATGTCTAATTTTTCATTTTTTTTCACTTGAAAATTGCTGAAATTTTCG
 
55
TAGCTGAAAAAGAGAGGCCTTCTTTGCTTACTCATCGTTATCTTATTGGTCAAGAGCCCA
 
56
AGGGACAATAGACAAGGAGAGAACCACCAACTTTGGGAGTTGGATGCAAAGAAGGTCTTT
 
57
GATTTTGGGCTGCTATCAGAGCGGGCCATATAAGGAAGCTTGTAGTGGTTAGGAGAGAAC
 
58
ACGTCATTACCCCCCTCCCCCTTCTCCGCGCTGCCAGGGACCAGGCAAGGGCTTGCAAGA
 
59
GATGAACGTAAGATAGAACTACGAGGGTCGCGGCCAATGTGTCGGTAGTACCGGATGGGG
 
60
CAAAGCCCAATTGAGGTGCTTGTTGTTGAGGATGGTCGGCATGGCATGGCATGGGAGGCC
 
61
AAAGGCGCTTTGTGGGAAGGAGAACAAACAACATTAGAGGGTGACGTTTTAGCGCATAGG
 
62
CAATCTCCCCTTATTGTTCACCCTTATTTCCACCCTCAAACGACAAGGCTTGTTATGTTG
 
63
GTTGGAAATATATAAAAGGGATTGAAAAAGATCATATTCCTACATAAATTATGGTATTAG
 
64
TTTTTCTTCAATTGCTGGCT
 
65
>WashU_Skud_Contig1850.5 YDL205C 5' untranslated region, Contig c1850 6875 - 8874(revcom), 2000 bp (revcom)
 
66
GATACGTGTGTATTTGCTAACTATAAAATTTATCTAGTTTTCCTGCTTTTTTTTTTTTCT
 
67
ATTGTTCTAGAAACTAATATGGGGATGAGAAGAACAAAATTTTCAAAAAGCAATACAGCC
 
68
CTGTACCATTCAAACACGAACGCCAATCTGCAATGACCTTGAAATCAATCTATGTGTCGC
 
69
GATAATACAAGTGATTGATTGGTGTCGTTTATATAAAGCGTTCCTTCAATTTTTTCATTT
 
70
TCTTTCTTTTTTTATGTTTAATTTTCTACCTTTTTCACTTTTGAAAATTGCTGAAATTTT
 
71
CGTAGCAAAAAAAGAGAGGCGTACGTTGCTTACTCATCGTTTTCTTATTGGTCAAAAGCT
 
72
CCAGGAACAATGCCCAAGGAGAGAAAGAGTGCTACGTCTAGGAATTGCGATGGAAAGGCG
 
73
TCCAAGAGTCCTAAACTACCATGAGAACGGGCCACCCAAGGAGGGATAGCAATTGCTGAA
 
74
ACAACATCTTCACCTTCGGAGCTGGCAGGGAGCAAGGGACTCTCCGGAAAGAAAGTGAAC
 
75
GCAAAACGGAACTACAAGGATAGCAACGGAATGTGTCGGTGGTAGCGGATGTGGCAAGAT
 
76
CCCATTTCAGGAGCTTGTTGTTACGGCACAGCAGCAAGAAGAGCACAAGGCTTTTTCCGT
 
77
AAAGGAGAACAAAGTTGGAAGGTGACGTTTAGGCGCATAGGCAATCTCCCCTTATTGTTC
 
78
ACCCTTATTTCCACCCTCAAAGGATAAAGCTTGTTGCATTGATAAAAAATGTATAAAAAG
 
79
GATGGGAAACAGATGATAGTTAACAAGGTAGTGGGACGGTCTTTCGCTTATTCAGTTGTG
 
80
TGACATTCAAGGGTTACAAT
 
81
>SGD_Scer_YDR047W HEM12 "Uroporphyrinogen decarboxylase, catalyzes the fifth step in the heme biosynthetic pathway; localizes to both the cytoplasm and nucleus; activity inhibited by Cu2+, Zn2+, Fe2+, Fe3+ and sulfhydryl-specific reagents"
 
82
AGCGTTATAACCTGTTCTTTGCTTTATTTTTTTTTTTTTTGTTCTTCCTTTTCTCGAAGA
 
83
GAGCTTACCAAACACAATTCTGAGATAATGCTTGATGAATTGAAGAACCTATCGATCACT
 
84
CTATGTTACCTTCGTCTGGAACATCACTAATTCGAGCGGTAAAGATGAAAATGGCAGAAC
 
85
ATTTCGCTGGCAAAATTAAAACTCTTGCCTCATTTTTTTTTGCTTTCCTCTCCTGCCGCC
 
86
AAAAACCCCGAACCCTGTCCTGTATATACGAGAAACATTGAAAAAGATCGTGTATGATAG
 
87
CGCCAAGATGGCGGATAAACTAACACTATTGACAGGTTGAGGCCAAGGATATATTACTTG
 
88
CTAACAGAAAGAGATACTGTCACCACAATTGCCCGCGTACGTATACTACAACATGTTCTC
 
89
TATATATCACCCACTCTTTCGCAGTGCTACGTACGCCAAAAACGCGCGCATGGAAGTAAA
 
90
GAAGTTTTTTCTTTTAAGAGCGAAGCTCCATTAAAAGCCTTGAATATAAACTAGTGCGAA
 
91
GTAGTATGATCCGAAGACACCAATTGCTGGTGCAGCATAGGAATATGTGGCGTCCGAAAA
 
92
AGAGCCTTTAACAATCCACGGCGAAACAAGGCACCGCTGTGCATTTAAAACATGCCGTTC
 
93
CCGTACCAAGTTATATTGTTACGGATGAATCCAAAATAATTTGTTAAAAAATGCTGCCGT
 
94
TCCGTCCCATTGAGTTTTATTTTCCTTCTCATGGCACCTTCTTCGTTTCTTCATCCTGCA
 
95
TTAGACTTACTAGTGTGCTTGCCGGATGCGTGCTTTTTTTTTCCGGCCGACACATATCGC
 
96
TGAGCTGGAAGGACACCTTTTAATGTAGCCGTGCATGCGGCTCCGCGAAAAGAGCTCTGC
 
97
TATATTTCTCTACCTGAACTTCGAGCCGCGATCAACGAAAGCTCTCATCCAAGGCTCGTT
 
98
TTTCTTGACAGAAGCATGACAGTAAAATATGCGGTCATTT
 
99
>MIT_Spar_c130_3923 YDR047W 5' untranslated region, Contig c130 9341 - 11340, 2000 bp (revcom)
 
100
AGCGTTATGATGTGTTATTTGCTTTTATTTTCTTCTTTCTTTGTCTCGAAGATAACCTAG
 
101
CAAACACAATTCTAAGAAAATTCTCGATGAATTGGTTGTCAGCGCTTCCTATTTACTCTA
 
102
TGTCCACTTCGTTTGAAACATCAGTGGTTCGAGCAGTAATGACAAAAAGGGCAGAACATT
 
103
TCGTTGGCAAAATTTAAACTCGTGCCTCTCATTTTTTTTACTTTTCTCTCCTGCCACCAA
 
104
AACCCCGAACCCTGTCCCGTATATACGAGGAACATTGAAAAAAAATCGTGTATGGTAGCG
 
105
CCAAGATAGCGAATAAACTATCAGTATTGGCAGGGTGAAGCTAAGGATATGTTGTTTGCT
 
106
AACAAAGGGAAATGCTTTCGTTATAATCGCCCGCGTGCGTCTACTAAAATATGATCTATA
 
107
TATACCACCCAGTCTATTGCAGTGTTACGTACATCAAAATGCGCGCATGTAAGTGAACAA
 
108
GTTTTTTTTGTTTAAAGAGCGATTTTCCAATAAAGGCTTTGGATATACACTGGTGCAAAA
 
109
TATATGGTCAATGACGCCAATTACTGGTGTAGCATGAGAATACGTCGTCCGAAAGAGTTT
 
110
TTTTTTACAAACTACGGCAAAGCAAAGCACCACTGGCGCAATTCAAAACATGCCGTCCCC
 
111
GTACTAAGTTATGTACGTTATTATGGACGGATCCAAAATTATACTCTAAAATGCTGCCGT
 
112
TCCGTCCCATTGAGTTTTATTTTCCTTCTCGTAGCACCTTCTTCGTGTCCTTTCCTTCTT
 
113
CTGCATTAGGCTTACTAGCGTCCTTTCCTTGCCGGATGCGTGCTTTTTTTTTCCGGCCGA
 
114
CAAATCTCGCTGAGTTGGAAAGACACCTTTTATATAGCCGTACGTGCGGCTCCTCGAGAA
 
115
AGGCCCTGCTATATTTCACTAGCTGATCCTCGAGCTGCGATCAACGAAAGCCCCATCCAA
 
116
AAGGCTCCTTTTTCTTCAAAGAAGCATGACAGTAAAATAT
 
117
>MIT_Sbay_c896_21277 YDR047W 5' untranslated region, Contig c896 2230 - 4229(revcom), 2000 bp (revcom)
 
118
AGTGTTAACAGTATCTTTTGCCTTTTTTTATTCTAATAGCTACCCCAGGAATCACTATTT
 
119
AGCAAAGATCGTTTGCAAATTGGCCGTCAGTACGTTCTAAGTTCTTTAGAACATCATTGG
 
120
CTCGAGCATTAGTGACACGAATAGGAAAGCATTTCGTTGACAAAAATAAAATTGTTTCTT
 
121
TATTTTTTCCCTCTTTTCCATGGCGTCAAAAAACCCCGAACCCTGTATAAACGAGGAAGC
 
122
TGCATGGTAGCGCCAGAAAAGGCAGATAACCTTTAACAGTGCTGACAGAACAACGTCAAA
 
123
CATGTGCGGATAATGCCTTCGCTGACGGCAAGAAATTATATACGCCTCGAAACTGTAGAA
 
124
CGTCTTTTGTGCCGCTTGGTAACAAATAAACCTAGCCGGGGCCAGAATTTCACCCGTACA
 
125
TACTTACTGTTACATACTGCATGCACGCTACGCATTCTCACCGAACATCGAATCTGCCTG
 
126
CAGAAGCGAAGAAAAGCAAGTCTTCGAAGAGCAAGCTTACATCCATCGTGTTGAACACAT
 
127
ATGCCCAGCAAAGGGATCGGATGACGCCCAACTAACATTGGAATTTGTGACGCAAGGCTG
 
128
AAAGGCACTTCTCTATAGCCCACGGTGAAGCCTTACGCTATTGACAAGACAAAACATGCC
 
129
GATCCAAGCCAGGCGAAACGGGCCTAGCACTACGCAGCCAAACACTGGCGTTCCGCCCGT
 
130
CCCATCCAGTTTCATTTCTTATTTCGTTCTGCCTTGGGCCTAGCAGCGTGCTTGCCGGAT
 
131
GAGTTTTTTCCATTTTCCTACCGGCTCATCTCGCTAAGCTGAAAGGTCAGTTTTATAGCC
 
132
GTGTGCGCGGCATCGAGAGACAGGTTCAGCTAATGATATTTGCCTAATTCTCGAGCTGAG
 
133
GCCAATGAAGGCAGCTTCCAGGGCTCGTTTCTGCTCGGGAAAAAGCATACCACACATTTG
 
134
CACGGCTTTTATGTGCCATAGTGCCACCACTAGCCCCCAG
 
135
>WashU_Skud_Contig1362.1 YDR047W 5' untranslated region, Contig c1362 1 - 761, 2000 bp (revcom)
 
136
AGTGTTGATGGTATCTTTTGATTTTTTCTAGATTGGTAGCAAGCTCAATTGGCACAGCTC
 
137
TAAAAAAAGCCTTGTGAATTGGATAGTACCTTCTTTCGTTTGGAACATTACTGCTTCGAG
 
138
CAATAAACATACGAAAGGCAGAACACCTCGTTGACAAAACTGAAACTATTTCTTCAATTT
 
139
TTTGGCCTTTTTTCCTGCTGCCAAAAAACCCCGAATCATGTAGAAGCGAGAAGTAAAACA
 
140
GAGGAAGTGTATGGTAGCGCCAAGGAAAACGGGCAATACTTAGAAAGAATGACAGAGCTC
 
141
AGCCAAGTGTAAGCTAAGTGTTGACAAGGGAAGGTACATTGGGCCCCGAAAAAATTTGCT
 
142
AATGCTCGAAGAGCTCTCAATCAATCACCCACATATATGTACTACAGTATATTTATACTT
 
143
TCCACGCAGTCTCACGCAGTGCCACCTTCATCACCATGCGTGTAACTAATCGAGCAAGCT
 
144
GTTTTACGAAGGGCAGCTTTCCTATAAGCGTTTTGAACATGCATGGCTGCACTGCAATGA
 
145
GATCAGGCGACTCCAATTCCATAGCCTAGCACGGGATTAAGTAACGAGAAACTGAAAGAG
 
146
ATAATTTTACAAACCCGGACGAAGCAGAGCACTTGCTGGAACAAATCAAACATGCCGTCC
 
147
CCTACCAGCTCTCGAAGCGGGCCTAGCATTACTCGATCGAACGTTGCCGTTTAGTCTTAT
 
148
TTTCCTTTCCGTGCTGCGCTGCTTTTTTCTTGCATTGGGCT