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  • Committer: Bazaar Package Importer
  • Author(s): Charles Plessy
  • Date: 2009-03-10 07:19:11 UTC
  • mfrom: (1.2.3 upstream)
  • Revision ID: james.westby@ubuntu.com-20090310071911-fukqzw54pyb1f0bd
Tags: 1.6.0-2
https://launchpad.net/bugs/324001
* Removed patch system (not used):
  - removed instuctions in debian/rules;
  - removed quilt from Build-Depends in debian/control.
* Re-enabled tests:
  - uncommented test command in debian/rules;
  - uncommented previously missing build-dependencies in debian/control.
  - Re-enabled tests and uncommented build-dependencies accordingly.
* Removed libmodule-build-perl and libtest-harness-perl from
  Build-Depends-Indep (provided by perl-modules).
* Better cleaning of empty directories using find -type d -empty -delete
  instead of rmdir in debian/rules (LP: #324001).

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t/data/genemark-fragment.out
 
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GeneMark.hmm PROKARYOTIC (Version 2.6c)
 
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Sequence file name: AAVN02000021.1.fasta,       RBS: N
 
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Model file name: /gsc/pkg/bio/genemark.hmm/genemark_hmm_prok.linux/modeldir/heu_1_41.mod
 
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Model organism: Heuristic_model_for_genetic_code_1_and_GC_41
 
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Tue Mar 20 17:32:00 2007
 
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Predicted genes
 
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   Gene    Strand    LeftEnd    RightEnd       Gene     Class
 
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    #                                         Length
 
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    1        +          <2         214          213        1
 
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    2        +         459        >596          138        1