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Viewing changes to t/data/map_hem/HEM12.ups.fa_.revcom

  • Committer: Bazaar Package Importer
  • Author(s): Charles Plessy
  • Date: 2009-03-10 07:19:11 UTC
  • mfrom: (1.2.3 upstream)
  • Revision ID: james.westby@ubuntu.com-20090310071911-fukqzw54pyb1f0bd
Tags: 1.6.0-2
https://launchpad.net/bugs/324001
* Removed patch system (not used):
  - removed instuctions in debian/rules;
  - removed quilt from Build-Depends in debian/control.
* Re-enabled tests:
  - uncommented test command in debian/rules;
  - uncommented previously missing build-dependencies in debian/control.
  - Re-enabled tests and uncommented build-dependencies accordingly.
* Removed libmodule-build-perl and libtest-harness-perl from
  Build-Depends-Indep (provided by perl-modules).
* Better cleaning of empty directories using find -type d -empty -delete
  instead of rmdir in debian/rules (LP: #324001).

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Lines of Context:
t/data/map_hem/HEM12.ups.fa_.revcom
 
1
>SGD_Scer_YDR047W HEM12 "Uroporphyrinogen decarboxylase, catalyzes the fifth step in the heme biosynthetic pathway; localizes to both the cytoplasm and nucleus; activity inhibited by Cu2+, Zn2+, Fe2+, Fe3+ and sulfhydryl-specific reagents"
 
2
AAATGACCGCATATTTTACTGTCATGCTTCTGTCAAGAAAAACGAGCCTTGGATGAGAGC
 
3
TTTCGTTGATCGCGGCTCGAAGTTCAGGTAGAGAAATATAGCAGAGCTCTTTTCGCGGAG
 
4
CCGCATGCACGGCTACATTAAAAGGTGTCCTTCCAGCTCAGCGATATGTGTCGGCCGGAA
 
5
AAAAAAAGCACGCATCCGGCAAGCACACTAGTAAGTCTAATGCAGGATGAAGAAACGAAG
 
6
AAGGTGCCATGAGAAGGAAAATAAAACTCAATGGGACGGAACGGCAGCATTTTTTAACAA
 
7
ATTATTTTGGATTCATCCGTAACAATATAACTTGGTACGGGAACGGCATGTTTTAAATGC
 
8
ACAGCGGTGCCTTGTTTCGCCGTGGATTGTTAAAGGCTCTTTTTCGGACGCCACATATTC
 
9
CTATGCTGCACCAGCAATTGGTGTCTTCGGATCATACTACTTCGCACTAGTTTATATTCA
 
10
AGGCTTTTAATGGAGCTTCGCTCTTAAAAGAAAAAACTTCTTTACTTCCATGCGCGCGTT
 
11
TTTGGCGTACGTAGCACTGCGAAAGAGTGGGTGATATATAGAGAACATGTTGTAGTATAC
 
12
GTACGCGGGCAATTGTGGTGACAGTATCTCTTTCTGTTAGCAAGTAATATATCCTTGGCC
 
13
TCAACCTGTCAATAGTGTTAGTTTATCCGCCATCTTGGCGCTATCATACACGATCTTTTT
 
14
CAATGTTTCTCGTATATACAGGACAGGGTTCGGGGTTTTTGGCGGCAGGAGAGGAAAGCA
 
15
AAAAAAAATGAGGCAAGAGTTTTAATTTTGCCAGCGAAATGTTCTGCCATTTTCATCTTT
 
16
ACCGCTCGAATTAGTGATGTTCCAGACGAAGGTAACATAGAGTGATCGATAGGTTCTTCA
 
17
ATTCATCAAGCATTATCTCAGAATTGTGTTTGGTAAGCTCTCTTCGAGAAAAGGAAGAAC
 
18
AAAAAAAAAAAAAATAAAGCAAAGAACAGGTTATAACGCT
 
19
>MIT_Spar_c130_3923 YDR047W 5' untranslated region, Contig c130 9341 - 11340, 2000 bp (revcom)
 
20
ATATTTTACTGTCATGCTTCTTTGAAGAAAAAGGAGCCTTTTGGATGGGGCTTTCGTTGA
 
21
TCGCAGCTCGAGGATCAGCTAGTGAAATATAGCAGGGCCTTTCTCGAGGAGCCGCACGTA
 
22
CGGCTATATAAAAGGTGTCTTTCCAACTCAGCGAGATTTGTCGGCCGGAAAAAAAAAGCA
 
23
CGCATCCGGCAAGGAAAGGACGCTAGTAAGCCTAATGCAGAAGAAGGAAAGGACACGAAG
 
24
AAGGTGCTACGAGAAGGAAAATAAAACTCAATGGGACGGAACGGCAGCATTTTAGAGTAT
 
25
AATTTTGGATCCGTCCATAATAACGTACATAACTTAGTACGGGGACGGCATGTTTTGAAT
 
26
TGCGCCAGTGGTGCTTTGCTTTGCCGTAGTTTGTAAAAAAAAACTCTTTCGGACGACGTA
 
27
TTCTCATGCTACACCAGTAATTGGCGTCATTGACCATATATTTTGCACCAGTGTATATCC
 
28
AAAGCCTTTATTGGAAAATCGCTCTTTAAACAAAAAAAACTTGTTCACTTACATGCGCGC
 
29
ATTTTGATGTACGTAACACTGCAATAGACTGGGTGGTATATATAGATCATATTTTAGTAG
 
30
ACGCACGCGGGCGATTATAACGAAAGCATTTCCCTTTGTTAGCAAACAACATATCCTTAG
 
31
CTTCACCCTGCCAATACTGATAGTTTATTCGCTATCTTGGCGCTACCATACACGATTTTT
 
32
TTTCAATGTTCCTCGTATATACGGGACAGGGTTCGGGGTTTTGGTGGCAGGAGAGAAAAG
 
33
TAAAAAAAATGAGAGGCACGAGTTTAAATTTTGCCAACGAAATGTTCTGCCCTTTTTGTC
 
34
ATTACTGCTCGAACCACTGATGTTTCAAACGAAGTGGACATAGAGTAAATAGGAAGCGCT
 
35
GACAACCAATTCATCGAGAATTTTCTTAGAATTGTGTTTGCTAGGTTATCTTCGAGACAA
 
36
AGAAAGAAGAAAATAAAAGCAAATAACACATCATAACGCT
 
37
>MIT_Sbay_c896_21277 YDR047W 5' untranslated region, Contig c896 2230 - 4229(revcom), 2000 bp (revcom)
 
38
CTGGGGGCTAGTGGTGGCACTATGGCACATAAAAGCCGTGCAAATGTGTGGTATGCTTTT
 
39
TCCCGAGCAGAAACGAGCCCTGGAAGCTGCCTTCATTGGCCTCAGCTCGAGAATTAGGCA
 
40
AATATCATTAGCTGAACCTGTCTCTCGATGCCGCGCACACGGCTATAAAACTGACCTTTC
 
41
AGCTTAGCGAGATGAGCCGGTAGGAAAATGGAAAAAACTCATCCGGCAAGCACGCTGCTA
 
42
GGCCCAAGGCAGAACGAAATAAGAAATGAAACTGGATGGGACGGGCGGAACGCCAGTGTT
 
43
TGGCTGCGTAGTGCTAGGCCCGTTTCGCCTGGCTTGGATCGGCATGTTTTGTCTTGTCAA
 
44
TAGCGTAAGGCTTCACCGTGGGCTATAGAGAAGTGCCTTTCAGCCTTGCGTCACAAATTC
 
45
CAATGTTAGTTGGGCGTCATCCGATCCCTTTGCTGGGCATATGTGTTCAACACGATGGAT
 
46
GTAAGCTTGCTCTTCGAAGACTTGCTTTTCTTCGCTTCTGCAGGCAGATTCGATGTTCGG
 
47
TGAGAATGCGTAGCGTGCATGCAGTATGTAACAGTAAGTATGTACGGGTGAAATTCTGGC
 
48
CCCGGCTAGGTTTATTTGTTACCAAGCGGCACAAAAGACGTTCTACAGTTTCGAGGCGTA
 
49
TATAATTTCTTGCCGTCAGCGAAGGCATTATCCGCACATGTTTGACGTTGTTCTGTCAGC
 
50
ACTGTTAAAGGTTATCTGCCTTTTCTGGCGCTACCATGCAGCTTCCTCGTTTATACAGGG
 
51
TTCGGGGTTTTTTGACGCCATGGAAAAGAGGGAAAAAATAAAGAAACAATTTTATTTTTG
 
52
TCAACGAAATGCTTTCCTATTCGTGTCACTAATGCTCGAGCCAATGATGTTCTAAAGAAC
 
53
TTAGAACGTACTGACGGCCAATTTGCAAACGATCTTTGCTAAATAGTGATTCCTGGGGTA
 
54
GCTATTAGAATAAAAAAAGGCAAAAGATACTGTTAACACT
 
55
>WashU_Skud_Contig1362.1 YDR047W 5' untranslated region, Contig c1362 1 - 761, 2000 bp (revcom)
 
56
AGCCCAATGCAAGAAAAAAGCAGCGCAGCACGGAAAGGAAAATAAGACTAAACGGCAACG
 
57
TTCGATCGAGTAATGCTAGGCCCGCTTCGAGAGCTGGTAGGGGACGGCATGTTTGATTTG
 
58
TTCCAGCAAGTGCTCTGCTTCGTCCGGGTTTGTAAAATTATCTCTTTCAGTTTCTCGTTA
 
59
CTTAATCCCGTGCTAGGCTATGGAATTGGAGTCGCCTGATCTCATTGCAGTGCAGCCATG
 
60
CATGTTCAAAACGCTTATAGGAAAGCTGCCCTTCGTAAAACAGCTTGCTCGATTAGTTAC
 
61
ACGCATGGTGATGAAGGTGGCACTGCGTGAGACTGCGTGGAAAGTATAAATATACTGTAG
 
62
TACATATATGTGGGTGATTGATTGAGAGCTCTTCGAGCATTAGCAAATTTTTTCGGGGCC
 
63
CAATGTACCTTCCCTTGTCAACACTTAGCTTACACTTGGCTGAGCTCTGTCATTCTTTCT
 
64
AAGTATTGCCCGTTTTCCTTGGCGCTACCATACACTTCCTCTGTTTTACTTCTCGCTTCT
 
65
ACATGATTCGGGGTTTTTTGGCAGCAGGAAAAAAGGCCAAAAAATTGAAGAAATAGTTTC
 
66
AGTTTTGTCAACGAGGTGTTCTGCCTTTCGTATGTTTATTGCTCGAAGCAGTAATGTTCC
 
67
AAACGAAAGAAGGTACTATCCAATTCACAAGGCTTTTTTTAGAGCTGTGCCAATTGAGCT
 
68
TGCTACCAATCTAGAAAAAATCAAAAGATACCATCAACACT