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  • Committer: Bazaar Package Importer
  • Author(s): Charles Plessy
  • Date: 2009-03-10 07:19:11 UTC
  • mfrom: (1.2.3 upstream)
  • Revision ID: james.westby@ubuntu.com-20090310071911-fukqzw54pyb1f0bd
Tags: 1.6.0-2
https://launchpad.net/bugs/324001
* Removed patch system (not used):
  - removed instuctions in debian/rules;
  - removed quilt from Build-Depends in debian/control.
* Re-enabled tests:
  - uncommented test command in debian/rules;
  - uncommented previously missing build-dependencies in debian/control.
  - Re-enabled tests and uncommented build-dependencies accordingly.
* Removed libmodule-build-perl and libtest-harness-perl from
  Build-Depends-Indep (provided by perl-modules).
* Better cleaning of empty directories using find -type d -empty -delete
  instead of rmdir in debian/rules (LP: #324001).

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scripts/Bio-DB-GFF/README
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These are utilities that go with the Bio::DB::GFF module.
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examples/Bio-DB-GFF/load_gff.PLS:
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Slow but foolproof GFF table to database loader.
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examples/Bio-DB-GFF/bulk_load_gff.PLS:      
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Fast loader, but wipes database clean each time.
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examples/Bio-DB-GFF/fast_load_gff.PLS:
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EXPERIMENTAL incremental loader that is as fast as bulk loader, but only works on Unix platforms.
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scripts/Bio-DB-GFF/generate_histogram.PLS: 
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Generate histogram of sequence features, for use with generic genome browser.
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scripts/Bio-DB-GFF/process_gadfly.PLS:     
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Tweak GadFly GFF files for loading (drosophila).
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scripts/Bio-DB-GFF/process_wormbase.PLS:   
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Tweak WormBase GFF files for loading (elegans).
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scripts/Bio-DB-GFF/process_sgd.PLS:        
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Turn SGD feature dumps into GFF files for loading (saccharomyces).
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scripts/Bio-DB-GFF/process_ncbi_human.PLS: 
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Turn NCBI feature dumps into GFF files for loading (human).
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These are scripts that go with the Bio::DB::GFF module, a basic
 
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seqfeature database.  Install these scripts if you wish to use the
 
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LDAS distributed annotation server or the Generic Genome Browser.
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