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Viewing changes to t/data/map_hem/HEM2.ups.fa_

  • Committer: Bazaar Package Importer
  • Author(s): Charles Plessy
  • Date: 2009-03-10 07:19:11 UTC
  • mfrom: (1.2.3 upstream)
  • Revision ID: james.westby@ubuntu.com-20090310071911-fukqzw54pyb1f0bd
Tags: 1.6.0-2
https://launchpad.net/bugs/324001
* Removed patch system (not used):
  - removed instuctions in debian/rules;
  - removed quilt from Build-Depends in debian/control.
* Re-enabled tests:
  - uncommented test command in debian/rules;
  - uncommented previously missing build-dependencies in debian/control.
  - Re-enabled tests and uncommented build-dependencies accordingly.
* Removed libmodule-build-perl and libtest-harness-perl from
  Build-Depends-Indep (provided by perl-modules).
* Better cleaning of empty directories using find -type d -empty -delete
  instead of rmdir in debian/rules (LP: #324001).

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Lines of Context:
t/data/map_hem/HEM2.ups.fa_
 
1
>SGD_Scer_YGL040C HEM2 "Delta-aminolevulinate dehydratase, a homo-octameric enzyme, catalyzes the conversion of delta-aminolevulinic acid to porphobilinogen, the second step in the heme biosynthetic pathway; localizes to both the cytoplasm and nucleus"
 
2
GGTTTTGTCAATTTTCTAGGTATGAATTACTGGAGTAAGCAATAATATGAGTAAGCAGTA
 
3
AAACTTTTTTTTATTTGGCTGATTGGGCAAGAAAATCAAAGACAATAGAGTGGCGCATAG
 
4
ATGTTGCTAGCATTTATTAGGTTGCCTTACTCTTATATAAATCAAGCGGGAAGCTTGCCT
 
5
CAAGCCAATCACCGCACCGAACAGGGATTGCTCGTTTACCCGTATTTTGATTTTTTTTTC
 
6
ACCTTTTCCAATTTTTTTTTCGGCAACAATTTTTTGGATGATTTTTATCGTCGATCTTGG
 
7
AATGATGATGTATTTCGGCGTCTCTACAAGACCCAATAAAGTAATTCGGTGACACAGGCT
 
8
TGTAGCAGATAGAAAACGTTCCGAAAGATGGGTTCCAATTGATGTAACACTTCTTTTTTA
 
9
TATATTCATGTGGACGTGTACGCCTTCTTCCCTTCTTTGCCTCTTGTGCCACTGTTAATC
 
10
CTCTTAAGCATATTGTTTTTATTTACAGACATTGGCTGACTCACCAGAAACTATAATTGA
 
11
CGCTGATTTCTAGTTAATTAAAAATAAAATATATGCAAGAATTAGCACCAGGCAGTCATT
 
12
TCTGTAAATTGCTTTGTTTTCTATTTCAAATTTGTTTTTTGTATATGTTTCAATGTTCTC
 
13
GTGACAATGCAGGCTTTTTTTTGTGCGAATTAAAGTAAAGCTAATCAAAACTAAACAATA
 
14
ATTTATCTTGTTCCCGAAAGAGTGGATCATGAGGAGGAAAGCTAACCGTCCAAGATCCTA
 
15
TATAATTTTTGAACTGAAAACCAACTGTTCACCTAGAAGACAGGTATCTGGATATGTAAC
 
16
TACACGCTCTATAAATACAGAAATCGTAAGCTAATCAATATAAATGTAAAAGAAAATAGG
 
17
AATTGCTGTCGATAGATTTATTTACTTTTGTATTGTCATCTGTGTTCTGTGCCAGTACAC
 
18
CGGACTCGTATGAGCTGTATGGTGTCGTTTCAATAGAATC
 
19
>MIT_Spar_c19_8512 YGL040C 5' untranslated region, Contig c19 1 - 1802, 2000 bp (revcom)
 
20
GGTTTTGTCAATATTCTAAATATGGATTCCTAGGGCAGGCAATAATATGGGGAAGCAGTA
 
21
AAACTTTTTGTTTTATGTGGCTGATTGGGCCAAAAAACAAGGACAATAGAATGACACATA
 
22
AAGTTTGCTAGCATTTATTAGGTTGCCTTACTCTTTTATAAATCAAGCGGGCAGCTTGCC
 
23
TCAGGCCAATCACCGCACCGAACAGGGATTGCTCGTTTACCCGTAGTTTGAATTTTTTTT
 
24
TCACCTTTTGAAATTTTTTTTTTTCGGCAACAATTTTGAATGACTTTTATCGTCAATCTT
 
25
GGGAGTATACCTGCCTCTTTACAACACCCAACAAAACACTTAAGTAAGACAAGCTTGTGG
 
26
CAGGTAGGAAAGGTTTCAAAAAAAAAAAAAAGGTTTTTATCTATGGTCATACTTTTTCTT
 
27
CGTATATTTATGTGAACACGTACGTCTTGTTTTGCCTTCTTTGGCTCTTGTGTCACTGAA
 
28
TCTTCACATATTGTTTTTATTTACAGATACTACTTGACTCGCCTAAAATTATAATCGGCG
 
29
ATGGTTTCTACTACCTTAGTTAAAAAATAAAATGAATCAAAACATTACCATTAATAATTC
 
30
AATTTTTCCACATTAGTTTGTTTTCTATTTTATGGCTTTCTTCTTGTATATTTCTCAATA
 
31
TACTGCATGGCAATGCAAGCTCTTCTCTTTTCTTGATTGAAAATAAAGCTGTGAAGAACT
 
32
AAATAATAATTTATTGATGTCCTCCACAAAATGTACACCTGCGCTAACCTTGCTTAACAG
 
33
ATACGGTCAAAACGAACTTGAGCATATGTAAAAATCCATGTATTTTTCTTCTTTTGCCAA
 
34
CTAAATCAAACTTTTTATTGTATATGTCGTACCGCCAATACAAAGATGGAGAGGTTAATG
 
35
AAAATAGATGTGAAAAAAAAGCAGGAACTATTGTAGATAGATATTTTTAGGGTTCGATTG
 
36
CTATTTTTCTGTATTATGATCTGTGTTCTATGCCAGTGTA
 
37
>MIT_Smik_c273_7756 YGL040C 5' untranslated region, Contig c273 1 - 1807, 2000 bp (revcom)
 
38
GGTTTTACCAGTTTTCTTAATACGGATATCTAGAGTAAGTCACAATTTAAGGAAATTGCA
 
39
AAATTTTCTTTTTATATAGCTAAATAGGCCAATAAATCAGGAACAATAGAATGACGCACC
 
40
GAGTTTGCTAGCAACCTACACACTTGCTTTTTTTTATAAATCAAGAGTGTATGTTGCCTC
 
41
AGGCCAATCACCGCACCGAATAAGGATTGCTCGTTTACCCGTTGTTCGATTTTTTTTTTC
 
42
ATCTTCTACCAATTTTTTTCGGCAGCGCCTTTGAATGACTTTGATCATCAATCCTGGAGT
 
43
AATATACACTTGTATGTTTGAAACGCCCAGTTACAATATTTATTGGAATAGCTAACTTAT
 
44
GAGTAAGTGGACCCAAATTTTCGAGTGATGTTTCCTGTCAACGGTGACACTTATTTTTGG
 
45
TTTGCAGATATGTATGTGTATATCTTATTCCCACTTTTTTATAGTTATCGTTATCTATGT
 
46
ATCTCAATACCTTGGACATGAATCACCGAGTAGATATTTTTCTTTACAATGCTTAAAACA
 
47
AGGCCGCACAGAACTAAACAATAAAGTTACCTTGATCTTTAATAAAATATTCCCCCATTA
 
48
ATAAGTACTCTCTTCGATTACGATTTAGCCATATTCATTTTGACCATACATTGCAGATGT
 
49
GAGATGGATTTTAAGTGGTGAAAGCGCTCTAAGCTATGCCATATAAGTACGTAAGGAGAG
 
50
ACAAAATTAAACATAATTAAGCGCCATGTGAGACTAAATGTGGCCGTCGTTTTGATTATA
 
51
TGATTGGGAAAAGCTCCTAAACATAGAGGTAGAATTATAGTTCGGAAATTTCGTCTTGCC
 
52
CTGCTCATTTTGTAGAAAACGAGTCATCATCTCCACCCTTTGTAACCGGTGTCCTGCTCA
 
53
CATAAATAGTCTCTACTGAGAGATTTGTGAATTTCGAGATAATTTTTGGGATTCCATTGT
 
54
TGATAAAGGCAATATTATTAGGTATATAAAATATACTAGA
 
55
>MIT_Sbay_c77_8808 YGL040C 5' untranslated region, Contig c77 1 - 1377, 2000 bp (revcom)
 
56
ACTTTGTCAGTGTTTTTCTGGTAAGGATATCTGGAAGAAGTAACAATACGTATAAATTAC
 
57
AAAATTACCGTTTTATGTCGTGGAATGGGCTATGAACTAACATTAACAATAGAGTGATGC
 
58
ATAGACGTCACTAGCCTTTTATTGTGTTGCCTTGCTCTTTTATAAATCAGGCAGCCTGCC
 
59
GCAGGCCAATCACCGCACCGCCCGGAGATGCTCGTTTACCGTTGTGCACCAAATTTTTCA
 
60
TTTTTTGCCTTTTTCTATTTGGCAGCGTTTTCGAAAAATTTTGATCATTAGTCTTCAATG
 
61
ACTGGACTGTCATATTTTAGGGCACGCAGGTAAAGATATGAACAAATCATATTGATGATG
 
62
GATGCCAATCCTTCAATGTAAATTCTTTCTAAACATCATGATAAAGAACTTCAGTAAGAG
 
63
AGTGATAAAAACTTTACATGTATGGCGGGTGTATTCTGTAATTGTTTTTTAGATCTTTTT
 
64
GTTGTTAACGGTGACACCATTCTTACTACAATAATTGCATGTCAAATGTAAATATCTTGC
 
65
TTCACATTTCGTTGTTTCTTTACGATAAATTGTTTCGTCGCAAATATATCTTATTTTGCG
 
66
TGGTTTATCTACAGACACTGCTTGATTTACGCATAAGTACATCATGTAGTAATTCTTATA
 
67
TTGAGTATAAAACCATATGAATAGAAATATTTTTGTTAATCTATCGTTAATTTACATGCT
 
68
AGTTTATTTGTCCCTTTAAAATTTCTTTATATATTTGTTGCAATATGTGGACAAGGAAAC
 
69
ACGAAATATATTGGGATAAAGTTTAAGTAGAGATACATAGAACTAAACAATAAATTCATA
 
70
TTCAATAATACTTCAAAAGGTACTCTCCTGTCTGAACACAGAGACTCACAGACTTTATTT
 
71
AGTCGTTATGGCGATGTCAGACATCATGTTTAAGGTAAGCCGAGTGGATTGATATGAAAT
 
72
TGTCATATCATGAATAAGCTAATTACCCAAAAACAGTAAA
 
73
>WashU_Sklu_Contig1444.1 YGL040C 5' untranslated region, Contig c1444 1328 - 2770(revcom), 2000 bp (revcom)
 
74
TGGTTTGACAATAGAAGCTTTGATACTGAACTATGATGAAAGCAGCTTGAAATGTAGCCA
 
75
ACAATAGTGGTTTTGGTTGTAACAAATTTTTCACCCAGATATGCGTTTCTTTTAAACCAA
 
76
AAAAAAAAAAAAAACCAAAAAAAAAAAAAAAAAGAAAGTTGTGATTAACTTAGAGATGAT
 
77
GTAGAAAAGTAATCTACGATTAGCAATTGTAGAGCGTAAGAGGTAAAATACAAGCATGTC
 
78
ACACCAATGCGAGGATGAGCATCATTCGCACAGACACTCCCCACCACCAATTCCAACCAG
 
79
TTCCAACCAGTCTCTGTACCAGTTCATTGACACTTCAAAGTTACGCTGCCTGAATGTTAC
 
80
AAGTAATGGTGCCAATCAGTTTCCTCCATGGTTCATAAACCCTCAGGACCAAAAATACGA
 
81
CGTCTCAAAGTACTTAGAGAGTGATGCAGATTGCCAAATGCTGTTGCATATCCCGTTTAC
 
82
CGGTGATGTCAGAATATTCTCCCTTATTCTAAGATGCAGTAAGGCGGAGGACGGATGCGG
 
83
GTCCCCTAAGAGTATTAAGCTTTACAAAAATTTCAACAAAAACACCGATTTTGAAACTAT
 
84
CAGCGATTCCAAGGAAAGCTACCACGTGGAAAGCCCAGAAGATGTTGGAATTGCTAGCGA
 
85
TGGGAGCGTGAACACAGTAGAAGACGATTCCACCTTCGTAGAACATCATCTTCCACGCCA
 
86
CATCTTCCAAAACTGCAATTCAATAACGCTGTTCTTTGAAAACAACTGGAGCGAGGACGA
 
87
AGACGATTTAACCAGATGTTACTACTTAGAATTGCGTGGCGAGTTCACTGCTAAACGTAC
 
88
ACCGCACGACGGGATGCCACAGTTAGCCGTCTACGAGGCTGCTCCAAATCCGGCGGATCA
 
89
CCAGAAGTTAGAGAATGAACAAGAATCTGCAAGTTTAGGCATGTAGGAAGAAATCTACGT
 
90
AGAAAACACAACAAAAAAAAATTAAAATTTATAAACGAGT
 
91
>WashU_Scas_Contig575.11 YGL040C 5' untranslated region, Contig c575 17052 - 19051, 2000 bp (revcom)
 
92
TGTTGGCGTCCTGTTTAGTCAATGTTAAAAAGGTAAGAGTTTGTAAAGTGTATAAGTCAA
 
93
GAAAGGGACTGTGAAACAATATGTTGAATGTAAGTTGTCTTTTATAATCCTAAGTGAAAT
 
94
TCCACCAACCAGGAACGAGCGGACATTTAAAGTTAAGGGAATGCGCCGTCGCTTCGTGGA
 
95
ATGTTAATGACACGTTTTATTTCATTTATTATAATAAAAAAACAATCAGATTGATTGTTG
 
96
CCCCATTATCCAGGTTGTTTAAAGAAGAGTACTGGATATAACTCTGTTGAGCTGATTTTT
 
97
CTATTCAAAATGATTAGGTAGCCTCCTTTACATAATTTTTTTTGGCGCAAACACCATGGC
 
98
TGAGACATTTGAGCAAATATTGATAATATTTTAAGAAAGAAAACAGACATATTGGTTCAA
 
99
CTGCAAAAGGTGCCTAAGAGGAGCAAATACTGCTCAAGAATACTAGTTGCAATTACAAGC
 
100
GATCAAAGATTTAATTCAAGCGTTGGAATATTAGCAACCTTTACCTGTATGAACCAACAT
 
101
TTTAAAGTTTGATAATTATTTTTAATCAATTTTAGTTGAAAAGTTATATAAAGTTCTCCG
 
102
ACAAATACTTGAATGACGTGCCATGTCTAATTTGGTTTAAGGTAGCAATATTTAGTTTTA
 
103
TTTTGGTGATATTCTAGAAAGTATTTAAACTGAAAAAACTAATCAAGAAATGAAAATTCA
 
104
AATATTCAAGAGAAAAAATAAATATTGTCTTAAATTTCTTATTTTCTCGACCCAAAAACC
 
105
GTAACTATACTTACCATTTACTTTCCTTGATCAGAATCAACTATTCCCCATACAAAGTAA
 
106
ATTAAATACTCAACTAATAATGGGATGACGGCATGACCGATTTTATGTAATAAAATAGGA
 
107
GCTCTAAACAAATTTTTTCACATTAATATGGTTGTTTGGCCGAGCGGTCTAAGGCGCCTG
 
108
ATTCAAGATCAAACATTCTTGACTGTGGAACACCACAGGA
 
109
>WashU_Skud_Contig2052.17 YGL040C 5' untranslated region, Contig c2052 29967 - 31966, 2000 bp (revcom)
 
110
GATTTGTCAGTGTTTTCTGATATGGATGCCTGGAGAAAATATTAATATGTGGAAACCACA
 
111
AAACTTCCACTTATATAGCTAATTTAGCCAGAAATCATGAACAATAGGATGACGCATAGA
 
112
CGTCACTACTCTTCATATAAGTTGCCTTTCTCTTTTATAAATTGGGCAGGCAGCTTGCCT
 
113
CAGGCCAATCACCGCACCGAACAGGGATTGCTCGTTTACCCGTTGCGTTCAAAGTTTTTC
 
114
ATTTTCCGCATCATCTACTTTTTTTTTTTTGACGCCGTTTTTGAATGTCTTGGTCATTGA
 
115
TCTTGAAATGATTTATGTTCGTGTTTTCACGGCACAAAGGTAGGCAAATCGGTAAATTTT
 
116
ACTCGTAATAAATAATCAAGGCCTCTAGAGGATTTAATATCAGGAAATAATAATGTGAGT
 
117
TTTTTGCAAATGGCCTTATATTCCTGACATCTTCTTGAATTTGTGTTTTAGCGTCGATGA
 
118
AGACTCTTCCTTTTTTCGTACGGTAATCTGGACATCTTGTTTCGTCTTTTCTTTTTTTTT
 
119
TGCGATTGCTTGTAATTCCAGATATGCAGCATTTATTTACAGGTGCTGATTGATTTACTA
 
120
TAGAGTTTATCAGGTAGTAGTTCTTTTTCATGTCTCAATTGAAGAAAAGGAACCCATAAA
 
121
TACATTAGCACTGAACAAACAATAACTGCCGCATTGGTTTGTTTTCTAACTTGAATTTTT
 
122
CTTTATACATATGCCACTGTATTAGGATGGGTGAATACCGTTTTCTTACTTTCTTCCTAT
 
123
GAAGGCGAAAGAATGGTGAAGGACAACTAAACAATAAATCGTTTTTCACACATCCCCATA
 
124
AAGCTTTCTCTGTTTGTCAGTTGTGACTCATCTTTCGTCGATGTTGCTTGGTAGATACAA
 
125
TTGAACAAGATTGAGATATCTAAAATGTTCAAAAATTATACTCTCTTATGTAGTTTCCGT
 
126
CATGGCTGAACGAAGGAAAACTACATCACCTGAGAATTAC