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Viewing changes to t/data/map_hem/HEM4.ups.fa_

  • Committer: Bazaar Package Importer
  • Author(s): Charles Plessy
  • Date: 2009-03-10 07:19:11 UTC
  • mfrom: (1.2.3 upstream)
  • Revision ID: james.westby@ubuntu.com-20090310071911-fukqzw54pyb1f0bd
Tags: 1.6.0-2
https://launchpad.net/bugs/324001
* Removed patch system (not used):
  - removed instuctions in debian/rules;
  - removed quilt from Build-Depends in debian/control.
* Re-enabled tests:
  - uncommented test command in debian/rules;
  - uncommented previously missing build-dependencies in debian/control.
  - Re-enabled tests and uncommented build-dependencies accordingly.
* Removed libmodule-build-perl and libtest-harness-perl from
  Build-Depends-Indep (provided by perl-modules).
* Better cleaning of empty directories using find -type d -empty -delete
  instead of rmdir in debian/rules (LP: #324001).

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Lines of Context:
t/data/map_hem/HEM4.ups.fa_
 
1
>SGD_Scer_YOR278W HEM4 "Uroporphyrinogen III synthase, catalyzes the conversion of hydroxymethylbilane to uroporphyrinogen III, the fourth step in the heme biosynthetic pathway"
 
2
CTCTCGAGCAAGGTCTATTTTACCTTTCTGTTTCCTTATCCTTTGACACTAAAATTCAAA
 
3
AAACTCACTAGAAAGTTCACTAAAGCGCCTTAGCTGACTACAGCACAACCCAACCCCAAA
 
4
AACTAGTGAACTACACACTAAGAGAATTTATGGTATTTCCATAATTGAAGTATATGTACG
 
5
ATGTATACAATGTAAACAAGAGAGTAATGAAGTGAAGATATGTACACCTAGAGCGAACCA
 
6
ATGATAATTTGTTTTCTTAATTAAGAAAAACCATTAAAACTGGATTAGATTTCAATAATG
 
7
AAAAGCTAGGAACAAAAAAAATTGGTCTACTTCCAGCCATTTGCGCTTTATATAGACATA
 
8
TGGAGGCGTGATGTCTTAAGCATGGTAATCCGGAAGATCAGTTTATTGAATGATGGTTTT
 
9
CTTATCCTGAAGGATCCTGCAAATGAAGTAAGTTCAAAGAATTGAAATGAAATCGCCTTT
 
10
TATACCCTCGCCGCACCAAGGAGCGCGCTGTGAAAATTTTTCGCTTTATCTCTTAGGGCT
 
11
CCTACTGTCGGTAGAGAAAAGTTGAGTATATTTAAAGCATGAGGTAACTTTTCTGCCCAT
 
12
TTTTACTTCTATTTCCATTTGAATTCAGAAAAGTG
 
13
>MIT_Spar_c261_21317 YOR278W 5' untranslated region, Contig c261 32269 - 34268, 2000 bp (revcom)
 
14
CGTTCCAAGCAGGGTTTATTCTATTTCTCGGCTCCTTTACCCTGTAACTTCGAGATTCAA
 
15
AAACTCGCTATAACTTCACTAAAGCGCTTTAGTTGACTACAACACAACCCAACCCCAAAA
 
16
TAAACTGTCCAACTACACAATACCGAGGATAATCCACGATATTTCGGTGATTGAAGTATA
 
17
TGTATTACGTATGCAATGTAAGCAAGAAACTAACAAAATGAATATGTACACCTAGAGCGA
 
18
ACCAATGATAATTTGTTTTCTTAATAAAGAAAAACTATTAAAACTGGATTAGATTTCAAT
 
19
AATGAAAAGCTAGGAACAGAAAAATTGGTCTACTTCCAGCCATTTGCGCTTTATATAGAC
 
20
ATATGGAGGCGTGATGTCTTAAGCATGGTAATCCGGAAGATCAGTTTATTGAATGATGGT
 
21
TCTTTTATCCTGAAGGATAAACGGAAAGCTCCCGATTAAAAACAAGTATAGAGTACTGGA
 
22
ATAGAATCGCCTTTTATACCCTCCCTCGCCGCATCAAGAAGCGCGCTGTGAAAATTTTTC
 
23
GTTTTTCTCTTAGGGCTCCCATCCAACTGTCGGCGAGGAAAAGTTGTATATATTTAAAGC
 
24
ATGAGGTAACTTTGTTGCCCATTATCTTTTTTGTT
 
25
>MIT_Smik_c492_20940 YOR278W 5' untranslated region, Contig c492 3260 - 5259(revcom), 2000 bp (revcom)
 
26
ACTTTCAAACACACTCTGGTGTACTCCTCGGTCCCTTCATCTCATTTCTTCAAGATGCAG
 
27
AACTTCGCCGGAAGTAAACTAAAGTGCTTTAATTAATCAAAAGACAACTTAATTCCCAAA
 
28
CGGAAATGCAGGCTAGACAAACCGAAGATAATCCCCGATATTTCTGAGTTTAACAAATGT
 
29
ATGTATAATATGTATGCAATGTAGGCAAGAAAATAACGAAGTGAAGATATGTACACCTAG
 
30
AGCGAACCAATAATAATTTGTTTTCTTACTAAAGAAAAACTATTAAAACTGGATTAGATT
 
31
TCAATAATGAAAAGCTAGGAACAAAAGAAATTTGTCTACTTCCAGCCATTTGCGCTTTAT
 
32
ATAGACATATGGAGGCGTGATGTCTTAAGCATGGTAATCCGGAAGATCAGTTTATTGAAT
 
33
GATGGTTCTTTTAAACCAAAATTTAAAGAAAAATCTTAACGGTAATATGAGTAGGAGGTT
 
34
GGAATGGGATCGCTTTTTATACCCTCATTGTGATAAGAGACGCGCAGTGAAAAATTTTCG
 
35
CTTTTTCTTAGGGCTCCTATCTAACTCTCGGGCGAATAAATATCATGAATGTATTTAAAC
 
36
GTCAAGTTAGTTAAATGTTTGAGTCTGTTTCTTTT
 
37
>WashU_Scas_Contig692.36 YOR278W 5' untranslated region, Contig c692 73267 - 75266, 2000 bp (revcom)
 
38
ACAACAACAAATTCAATTTTTTGCCCAATCACCGCAATATAACCTTTTAACGGTTAACGC
 
39
CAGATAAAGTGACTTTGCCAATATAAATGATAGCATCAATTTTATTAGTTTTTAATATAC
 
40
AAAAAATGGTTTTCTAAATAATGATTATTCTAGAGATATTTTTATTATATGTAATGAGAA
 
41
TTTTATTTTATTTTATGTTTTGGTGATGAGGTTTATCTATTCCCATTCAACGGTAGCAGG
 
42
TGGCTTAGAAGTAATATCATATGTAACTCTAGCAACACCATCCACTTCATTGACGATTCT
 
43
AGAAGCAACCTTCTTCAAGAAGCTGTGTTCAAATGGATACCAATCAGCAGTCATGAAATC
 
44
AGTAGTTTCAATGGCTCTTAATGCAATAACTTGTTCGTAAGTTCTTTGATCACCCATGAC
 
45
ACCGACAGATTTAACTGGAAGTAAACATGCAAAGGCTTGAGAGATCTTATCATATAGACC
 
46
AGCCTTTCTAATTTCTTCAATGTAAATGTAATCGGCCTTCCTAGCAATGGCAACTTGTTC
 
47
CTTGGTAACTTCACCTAGGACACGAATGGCAATACCTGGACCTGGGAATGGATGTCTCCA
 
48
AACTAATTCGTGGGAGATCCCCAATAATTCACCTA
 
49
>WashU_Skud_Contig1682.4 YOR278W 5' untranslated region, Contig c1682 3379 - 5378, 2000 bp (revcom)
 
50
CTCTTCAAACAGACTCCAATTCACTACTGAGCTCTTACCTTGTGACTTCAAGACTCACTA
 
51
CTCAGTTGAAAGACACGCTCAGTACCAAATTCGGCTGCGAGGCAACTAACGCCTTTAAAC
 
52
AGGTAGGTAAGGAACAATACCGAAAGGCCATCTCCGATGTTTCGAAGATTGGCAAATGTA
 
53
TATATTATGTATGCAATATAGGCAAGATGATAACGAAGTAGAGATATGTACACCTAGAGC
 
54
GAACCAATGATAATTTGTTTTCTTAATGAAGAAAGTATTAAAACTGGATTAGATTTCAAT
 
55
AATGAAAAGCTAGGAATAAAAGAGATTGGTCTACTTCCAGCCATTTGCGCTTTACATAGA
 
56
CATATGGAGGCGTGATGTCTTAAGCATGGTAATCCGGAAGATCAGTTTATTGAATGATGG
 
57
TTCTATTTAAAATGAAATCTAAAGATAAACCCTAGTCATAATCAAGTGGGTTGTGTTAAA
 
58
ATACAAGCACCTTTTATACTCTCGCAGCGTCAGTGGCGCGTTGTGAAAAATTTTCACTTT
 
59
TTCTCAGGGCTTTTACCCAACTGCCGACAAATAAAAGCCGTATTTAAGGAATGTGATTAG
 
60
TTTACTTTCCAATGCTTTCTCTTTTTTGTAGGGTA
 
61
>WashU_Sbay_Contig635.57 YOR278W 5' untranslated region, Contig c635 91073 - 93072, 2000 bp (revcom)
 
62
ACGTACAGATGGCGTCTCCTCCTTTCGCGAGCCCCTTGCCTTGTGACTTCAGCCTAACTT
 
63
CTTGACTAGAAGATACAACAAGAAATACTCAAATCGGTTATTGTGCAACTCATCCCTCAG
 
64
ACAGTTTGGTAAGAAACACCGAAGACTATTTCCGATATCTCAAAGAATGACAAAAGTATA
 
65
CATTATATATGCAAGAGAGGCAAGAAAAGAGTAAAAAAGAGTAAAAAAAACATGTACACC
 
66
TAGAGCGAACCAGTGATAATTTGCTTCTCAATGAAGAAAAAGCGATTAAAACTGGATTAG
 
67
ATTTCATTAAAGAAAAGCTAGGAACAAAGAAATTGGTCTACTTCCAGCCATTTGCGCTTG
 
68
ACATAGACATATGGAGGCGTGATGTCTTAAGCATGGTAATCCGGAAGATCAGTTTATTGA
 
69
ATGATGGCTCTTTTAAATTGAGATCTAAAAGAAATATCCTGGAAAAGAGTAGAGAAGAGT
 
70
CCAAACTGTAGGAATTCAATCGCTTTTTATACTCTCATCGCGGAAAAGACGCGCTGTGAA
 
71
AAATTTTCTCTTTTTCTTAGGGCTCCTATCCAGCTGCCTGCGAACAAAAGCCGTATTTAA
 
72
AGCATGATTTTCACTACTATGTATGTTCTTTCTGC
 
73