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  • Committer: Package Import Robot
  • Author(s): Andreas Tille
  • Date: 2013-06-17 18:28:26 UTC
  • mfrom: (9.1.2 sid)
  • Revision ID: package-import@ubuntu.com-20130617182826-376az5ad080a0sfe
Tags: 1.7.0+dfsg-1
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doc/scripts/alpha_diversity_metrics.rst
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        * doubles (# otus with exactly two individuals in sample)
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        * equitability
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        * fisher_alpha
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        * heip_e
 
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        * gini index
 
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        * goods coverage
 
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        * heip_e (note, using heip_e at low (<5) individuals may cause errors
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        * kempton_taylor_q
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        * margalef
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        * mcintosh_d
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        * michaelis_menten_fit
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        * observed_species
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        * osd (observed # otus, singleton OTUs, doubleton OTUs)
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        * reciprocal_simpson
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        * robbins
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        * shannon
 
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        * shannon (base 2 is used in the logarithms)
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        * simpson (1 - Dominance)
 
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        * simpson_reciprocal (1 / Dominance)
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        * simpson_e
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        * singles (# OTUs with exactly one individual present in sample)
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        * strong
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*Phylogeny based metrics:*
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        * PD_whole_tree
 
 
b'\\ No newline at end of file'
 
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        * PD_whole_tree