← Back to branch summary

~ubuntu-branches/ubuntu/trusty/qiime/trusty

« back to all changes in this revision

Viewing changes to qiime_test_data/core_diversity_analyses/core_output/taxa_plots_day/day_otu_table_sorted.biom

  • Committer: Package Import Robot
  • Author(s): Andreas Tille
  • Date: 2013-06-17 18:28:26 UTC
  • mfrom: (9.1.2 sid)
  • Revision ID: package-import@ubuntu.com-20130617182826-376az5ad080a0sfe
Tags: 1.7.0+dfsg-1
Upload preparations done for BioLinux to Debian

Show diffs side-by-side

added added

removed removed

Lines of Context:
qiime_test_data/core_diversity_analyses/core_output/taxa_plots_day/day_otu_table_sorted.biom
 
1
{"id": "None","format": "Biological Observation Matrix 1.0.0","format_url": "http://biom-format.org","type": "OTU table","generated_by": "QIIME 1.6.0-dev","date": "2013-05-13T12:20:33.511818","matrix_type": "sparse","matrix_element_type": "float","shape": [14, 3],"data": [[0,1,22.0],[0,2,60.0],[1,1,1.0],[2,0,1.0],[2,1,1.0],[2,2,1.0],[3,0,1.0],[4,1,1.0],[5,1,20.0],[6,1,1.0],[7,0,1.0],[7,1,1.0],[8,0,2.0],[8,1,4.0],[9,1,2.0],[10,0,1.0],[11,0,21.0],[11,1,13.0],[12,0,19.0],[12,1,18.0],[13,1,4.0],[13,2,5.0]],"rows": [{"id": "295053", "metadata": {"taxonomy": ["k__Bacteria"]}},{"id": "42684", "metadata": {"taxonomy": ["k__Bacteria", "p__Proteobacteria"]}},{"id": "None11", "metadata": {"taxonomy": ["Unclassified"]}},{"id": "None10", "metadata": {"taxonomy": ["Unclassified"]}},{"id": "None7", "metadata": {"taxonomy": ["Unclassified"]}},{"id": "None6", "metadata": {"taxonomy": ["Unclassified"]}},{"id": "None5", "metadata": {"taxonomy": ["k__Bacteria"]}},{"id": "None4", "metadata": {"taxonomy": ["Unclassified"]}},{"id": "None3", "metadata": {"taxonomy": ["k__Bacteria"]}},{"id": "None2", "metadata": {"taxonomy": ["k__Bacteria"]}},{"id": "None1", "metadata": {"taxonomy": ["Unclassified"]}},{"id": "879972", "metadata": {"taxonomy": ["k__Bacteria"]}},{"id": "None9", "metadata": {"taxonomy": ["Unclassified"]}},{"id": "None8", "metadata": {"taxonomy": ["k__Bacteria"]}}],"columns": [{"id": "21", "metadata": {"p1": {"days_since_epoch": "14173", "Description": "palm1, contains one randomly generated sequence", "SampleType": "L_palm", "BarcodeSequence": "AACGCACGCTAG", "month": "10", "LinkerPrimerSequence": "GTGCCAGCMGCCGCGGTAA", "year": "2008", "day": "21", "subject": "1"}, "t1": {"days_since_epoch": "14173", "Description": "tongue1, contains one randomly generated sequence", "SampleType": "Tongue", "BarcodeSequence": "AGTGAGAGAAGC", "month": "10", "LinkerPrimerSequence": "GTGCCAGCMGCCGCGGTAA", "year": "2008", "day": "21", "subject": "1"}}},{"id": "22", "metadata": {"p2": {"days_since_epoch": "14174", "Description": "palm2", "SampleType": "L_palm", "BarcodeSequence": "ACACTGTTCATG", "month": "10", "LinkerPrimerSequence": "GTGCCAGCMGCCGCGGTAA", "year": "2008", "day": "22", "subject": "1"}, "f1": {"days_since_epoch": "14174", "Description": "fecal1", "SampleType": "feces", "BarcodeSequence": "ACACTGTTCATG", "month": "10", "LinkerPrimerSequence": "GTGCCAGCMGCCGCGGTAA", "year": "2008", "day": "22", "subject": "1"}, "t2": {"days_since_epoch": "14174", "Description": "tongue2", "SampleType": "Tongue", "BarcodeSequence": "ATACTATTGCGC", "month": "10", "LinkerPrimerSequence": "GTGCCAGCMGCCGCGGTAA", "year": "2008", "day": "22", "subject": "1"}, "not16S.1": {"days_since_epoch": "14174", "Description": "randomly generated sequence plus some variants, these should not map to 16S", "SampleType": "Other", "BarcodeSequence": "ATACTATTGCGC", "month": "10", "LinkerPrimerSequence": "GTGCCAGCMGCCGCGGTAA", "year": "2008", "day": "22", "subject": "1"}}},{"id": "23", "metadata": {"f2": {"days_since_epoch": "14175", "Description": "fecal2", "SampleType": "feces", "BarcodeSequence": "ACCAGACGATGC", "month": "10", "LinkerPrimerSequence": "GTGCCAGCMGCCGCGGTAA", "year": "2008", "day": "23", "subject": "1"}, "f3": {"days_since_epoch": "14175", "Description": "identical sequences to fecal2", "SampleType": "feces", "BarcodeSequence": "ACCAGACGATGC", "month": "10", "LinkerPrimerSequence": "GTGCCAGCMGCCGCGGTAA", "year": "2008", "day": "23", "subject": "1"}, "f4": {"days_since_epoch": "14175", "Description": "all sequences identical, map to GG 295053 at 97 percent id", "SampleType": "feces", "BarcodeSequence": "ACCAGACGATGC", "month": "10", "LinkerPrimerSequence": "GTGCCAGCMGCCGCGGTAA", "year": "2008", "day": "23", "subject": "1"}}}]}
 
 
b'\\ No newline at end of file'