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  • Committer: Package Import Robot
  • Author(s): Andreas Tille
  • Date: 2013-06-17 18:28:26 UTC
  • mfrom: (9.1.2 sid)
  • Revision ID: package-import@ubuntu.com-20130617182826-376az5ad080a0sfe
Tags: 1.7.0+dfsg-1
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doc/scripts/transform_coordinate_matrices.rst
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Two transformed coordinate matrices corresponding to the two input coordinate matrices, and (if -r was specified) a text file summarizing the results of the Monte Carlo simulations.
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**Generate monte carlo p-values:**
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::
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        transform_coordinate_matrices.py -r 1000 -i weighted_unifrac_coords.txt,unweighted_unifrac_coords.txt
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**Write the transformed procrustes matrices to file:**
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::
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        transform_coordinate_matrices.py -o out/ -i weighted_unifrac_coords.txt,unweighted_unifrac_coords.txt
 
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        transform_coordinate_matrices.py -i unweighted_unifrac_pc.txt,weighted_unifrac_pc.txt -o procrustes_output
 
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**Generate transformed procrustes matrices and monte carlo p-values:**
 
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        transform_coordinate_matrices.py -i unweighted_unifrac_pc.txt,weighted_unifrac_pc.txt -o mc_procrustes_output -r 1000
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