← Back to branch summary

~ubuntu-branches/ubuntu/trusty/qiime/trusty

« back to all changes in this revision

Viewing changes to doc/scripts/filter_otus_by_sample.rst

  • Committer: Package Import Robot
  • Author(s): Andreas Tille
  • Date: 2013-06-17 18:28:26 UTC
  • mfrom: (9.1.2 sid)
  • Revision ID: package-import@ubuntu.com-20130617182826-376az5ad080a0sfe
Tags: 1.7.0+dfsg-1
Upload preparations done for BioLinux to Debian

Show diffs side-by-side

added added

removed removed

Lines of Context:
doc/scripts/filter_otus_by_sample.rst
39
39
 
40
40
**Example:**
41
41
 
42
 
The following command can be used, where all options are passed (using the resulting OTU file from `pick_otus.py <./pick_otus.html>`_, FASTA file from `split_libraries.py <./split_libraries.html>`_ and removal of Sample1) with the resulting data being written to the output directory "filtered_otus/":
 
42
The following command can be used, where all options are passed (using the resulting OTU file from `pick_otus.py <./pick_otus.html>`_, FASTA file from `split_libraries.py <./split_libraries.html>`_ and removal of sample 'PC.636') with the resulting data being written to the output directory "filtered_otus/":
43
43
 
44
44
::
45
45
 
46
 
        filter_otus_by_sample.py -i seqs_otus.txt -f seqs.fna -s Sample1 -o filtered_otus/
 
46
        filter_otus_by_sample.py -i seqs_otus.txt -f seqs.fna -s PC.636 -o filtered_otus/
47
47
 
48
48