← Back to branch summary

~ubuntu-branches/ubuntu/trusty/qiime/trusty

« back to all changes in this revision

Viewing changes to qiime_test_data/pick_otus/usearch_qf_results_no_ref_chim_detection/uchime_de_novo_chimera_filtering.log

  • Committer: Package Import Robot
  • Author(s): Andreas Tille
  • Date: 2013-06-17 18:28:26 UTC
  • mfrom: (9.1.2 sid)
  • Revision ID: package-import@ubuntu.com-20130617182826-376az5ad080a0sfe
Tags: 1.7.0+dfsg-1
Upload preparations done for BioLinux to Debian

Show diffs side-by-side

added added

removed removed

Lines of Context:
qiime_test_data/pick_otus/usearch_qf_results_no_ref_chim_detection/uchime_de_novo_chimera_filtering.log
 
1
usearch --usersort --chimeras /Users/jrideout/dev/qiime_test_data/pick_otus/usearch_qf_results_no_ref_chim_detection/de_novo_chimeras.fasta --abskew 2.0 --uchime /Users/jrideout/dev/qiime_test_data/pick_otus/usearch_qf_results_no_ref_chim_detection/clustered_error_corrected.fasta --log /Users/jrideout/dev/qiime_test_data/pick_otus/usearch_qf_results_no_ref_chim_detection/uchime_de_novo_chimera_filtering.log --nonchimeras /Users/jrideout/dev/qiime_test_data/pick_otus/usearch_qf_results_no_ref_chim_detection/de_novo_non_chimeras.fasta
 
2
Started Thu Oct 18 14:23:30 2012
 
3
Version 5.2.32
 
4
8.6Gb RAM
 
5
 
 
6
Minus strand search OFF
 
7
    0.28  minh
 
8
    8.00  xn
 
9
    1.40  dn
 
10
    1.00  xa
 
11
    0.80  mindiv
 
12
    0.75  id
 
13
       2  maxp
 
14
 
 
15
Highest-abundance sequences
 
16
      3  Cluster2;size=3
 
17
      3  Cluster3;size=3
 
18
      2  Cluster70;size=2
 
19
      2  Cluster87;size=2
 
20
      2  Cluster68;size=2
 
21
      2  Cluster67;size=2
 
22
      2  Cluster65;size=2
 
23
      2  Cluster82;size=2
 
24
      2  Cluster20;size=2
 
25
      2  Cluster73;size=2
 
26
      2  Cluster18;size=2
 
27
      2  Cluster34;size=2
 
28
      2  Cluster16;size=2
 
29
      2  Cluster74;size=2
 
30
      2  Cluster14;size=2
 
31
      2  Cluster11;size=2
 
32
      2  Cluster10;size=2
 
33
      2  Cluster9;size=2
 
34
      2  Cluster8;size=2
 
35
      2  Cluster7;size=2
 
36
      2  Cluster6;size=2
 
37
      2  Cluster5;size=2
 
38
      2  Cluster4;size=2
 
39
      2  Cluster1;size=2
 
40
      2  Cluster0;size=2
 
41
      1  Cluster75;size=1
 
42
      1  Cluster76;size=1
 
43
      1  Cluster72;size=1
 
44
      1  Cluster71;size=1
 
45
      1  Cluster69;size=1
 
46
      1  Cluster66;size=1
 
47
      1  Cluster64;size=1
 
48
 
 
49
/Users/jrideout/dev/qiime_test_data/pick_otus/usearch_qf_results_no_ref_chim_detection/clustered_error_corrected.fasta: 7/99 chimeras found (7.1%)
 
50
 
 
51
              Id      Allocs       Frees     Pct         Bytes
 
52
----------------  ----------  ----------  ------  ------------
 
53
          windex       12836         749   72.2%         1.2Mb
 
54
            mx_h         628         178   19.5%       328.7kb
 
55
         myutils           3           0    5.7%        96.0kb
 
56
           ultra          25          24    2.4%        40.1kb
 
57
           dpmem           4           2    0.1%       2168.0b
 
58
       hspfinder         398         396    0.0%        768.0b
 
59
           seqdb         388         388    0.0%         39.0b
 
60
----------------  ----------  ----------  ------  ------------
 
61
           Total       14282        1737  100.0%         1.7Mb
 
62
 
 
63
Finished Thu Oct 18 14:23:30 2012
 
64
Elapsed time 00:00
 
65
Max memory 3.2Mb