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Viewing changes to qiime_test_data/pick_open_reference_otus/ucrss_iter_no_tax/1/prefilter_otus/seqs2_clusters.uc

  • Committer: Package Import Robot
  • Author(s): Andreas Tille
  • Date: 2013-06-17 18:28:26 UTC
  • mfrom: (9.1.2 sid)
  • Revision ID: package-import@ubuntu.com-20130617182826-376az5ad080a0sfe
Tags: 1.7.0+dfsg-1
Upload preparations done for BioLinux to Debian

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qiime_test_data/pick_open_reference_otus/ucrss_iter_no_tax/1/prefilter_otus/seqs2_clusters.uc
 
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# uclust --maxrejects 500 --input /Users/caporaso/temp/UclustExactMatchFilterlbAzgB7AYd7Kh5XkArDP.fasta --id 0.6 --w 12 --stepwords 20 --rev --usersort --maxaccepts 20 --libonly --stable_sort --lib /Users/caporaso/code/Qiime/qiime_test_data/pick_open_reference_otus/refseqs.fna --uc /Users/caporaso/code/Qiime/qiime_test_data/pick_open_reference_otus/ucrss_iter_no_tax//1//prefilter_otus/seqs2_clusters.uc
 
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# version=1.2.22
 
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# Tab-separated fields:
 
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# 1=Type, 2=ClusterNr, 3=SeqLength or ClusterSize, 4=PctId, 5=Strand, 6=QueryStart, 7=SeedStart, 8=Alignment, 9=QueryLabel, 10=TargetLabel
 
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# Record types (field 1): L=LibSeed, S=NewSeed, H=Hit, R=Reject, D=LibCluster, C=NewCluster, N=NoHit
 
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# For C and D types, PctId is average id with seed.
 
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# QueryStart and SeedStart are zero-based relative to start of sequence.
 
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# If minus strand, SeedStart is relative to reverse-complemented seed.
 
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L       3       1389    *       *       *       *       *       295053  *
 
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H       3       133     100.0   +       0       0       519I133M737I    QiimeExactMatch.f5_1370 295053
 
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H       3       133     96.2    +       0       0       519I133M737I    QiimeExactMatch.f5_1300 295053
 
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L       0       1486    *       *       *       *       *       426848  *
 
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H       0       152     78.9    +       0       0       519I93MI59M814I QiimeExactMatch.f5_1360 426848
 
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H       3       143     100.0   +       0       0       519I143M727I    QiimeExactMatch.f5_1470 295053
 
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H       3       141     100.0   +       0       0       519I141M729I    QiimeExactMatch.f5_1510 295053
 
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H       0       152     77.6    +       0       0       519I93MI59M814I QiimeExactMatch.f5_1400 426848
 
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D       0       3       *       *       *       *       78.3    426848  *
 
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D       3       5       *       *       *       *       99.1    295053  *