« back to all changes in this revision
Viewing changes to qiime_test_data/conditional_uncovered_probability/cup_lower_bound.txt
- Committer: Package Import Robot
- Date: 2013-06-17 18:28:26 UTC
- mfrom: (9.1.2 sid)
- Revision ID: package-import@ubuntu.com-20130617182826-376az5ad080a0sfe
Upload preparations done for BioLinux to Debian
- files added:
- .pc/fix_path_for_support_files/qiime
- .pc/fix_typo_in_error_message
- .pc/fix_typo_in_error_message/scripts
- .pc/remove_matplotlib_warning
- .pc/remove_matplotlib_warning/scripts
- examples
- examples/ipynb
- examples/qiime_tutorial
- examples/qiime_tutorial/18S_tutorial_files
- qiime/workflow
- qiime_test_data
- qiime_test_data/add_alpha_to_mapping_file
- qiime_test_data/add_qiime_labels
- qiime_test_data/add_qiime_labels/combined_fasta
- qiime_test_data/add_qiime_labels/fasta_dir
- qiime_test_data/adjust_seq_orientation
- qiime_test_data/align_seqs
- qiime_test_data/align_seqs/infernal_aligned
- qiime_test_data/align_seqs/muscle_alignment
- qiime_test_data/align_seqs/pynast_aligned
- qiime_test_data/align_seqs/pynast_aligned_defaults
- qiime_test_data/alpha_diversity
- qiime_test_data/alpha_diversity/adiv_chao1_pd
- qiime_test_data/alpha_diversity/otu_tables
- qiime_test_data/alpha_rarefaction
- qiime_test_data/alpha_rarefaction/arare_max100
- qiime_test_data/alpha_rarefaction/arare_max100/alpha_div
- qiime_test_data/alpha_rarefaction/arare_max100/alpha_div_collated
- qiime_test_data/alpha_rarefaction/arare_max100/alpha_rarefaction_plots
- qiime_test_data/alpha_rarefaction/arare_max100/alpha_rarefaction_plots/average_plots
- qiime_test_data/alpha_rarefaction/arare_max100/alpha_rarefaction_plots/average_tables
- qiime_test_data/alpha_rarefaction/arare_max100/alpha_rarefaction_plots/html_plots
- qiime_test_data/alpha_rarefaction/arare_max100/rarefaction
- qiime_test_data/alpha_rarefaction/jobs
- qiime_test_data/ampliconnoise
- qiime_test_data/assign_taxonomy
- qiime_test_data/beta_diversity
- qiime_test_data/beta_diversity/beta_div
- qiime_test_data/beta_diversity/otu_tables
- qiime_test_data/beta_diversity_through_plots
- qiime_test_data/beta_diversity_through_plots/bdiv_even100
- qiime_test_data/beta_diversity_through_plots/bdiv_even100/unweighted_unifrac_2d_continuous
- qiime_test_data/beta_diversity_through_plots/bdiv_even100/unweighted_unifrac_2d_continuous/20120314103522udFphID5lVnUkWQ0i7TW
- qiime_test_data/beta_diversity_through_plots/bdiv_even100/unweighted_unifrac_2d_continuous/20120314103522udFphID5lVnUkWQ0i7TW/20120314103522SDOXyYG1bu4yrvUTE0Be
- qiime_test_data/beta_diversity_through_plots/bdiv_even100/unweighted_unifrac_2d_continuous/20120314103522udFphID5lVnUkWQ0i7TW/20120314103522yTGdENkY0ch21hh0zhOy
- qiime_test_data/beta_diversity_through_plots/bdiv_even100/unweighted_unifrac_2d_continuous/js
- qiime_test_data/beta_diversity_through_plots/bdiv_even100/unweighted_unifrac_2d_discrete
- qiime_test_data/beta_diversity_through_plots/bdiv_even100/unweighted_unifrac_2d_discrete/20120314103523ohR5zmPWiCbG5ipXF1cZ
- qiime_test_data/beta_diversity_through_plots/bdiv_even100/unweighted_unifrac_2d_discrete/20120314103523ohR5zmPWiCbG5ipXF1cZ/20120314103523rNvk3mkcFvTDKPsGnPTn
- qiime_test_data/beta_diversity_through_plots/bdiv_even100/unweighted_unifrac_2d_discrete/20120314103523ohR5zmPWiCbG5ipXF1cZ/20120314103524P4dlKC3d66meh9ZCGm2v
- qiime_test_data/beta_diversity_through_plots/bdiv_even100/unweighted_unifrac_2d_discrete/js
- qiime_test_data/beta_diversity_through_plots/bdiv_even100/unweighted_unifrac_3d_continuous
- qiime_test_data/beta_diversity_through_plots/bdiv_even100/unweighted_unifrac_3d_continuous/20120314103521her3okv0fUlv3Y95ceLG
- qiime_test_data/beta_diversity_through_plots/bdiv_even100/unweighted_unifrac_3d_continuous/jar
- qiime_test_data/beta_diversity_through_plots/bdiv_even100/unweighted_unifrac_3d_discrete
- qiime_test_data/beta_diversity_through_plots/bdiv_even100/unweighted_unifrac_3d_discrete/20120314103521Vi1G4fwghLfkgPIAGSvG
- qiime_test_data/beta_diversity_through_plots/bdiv_even100/unweighted_unifrac_3d_discrete/jar
- qiime_test_data/beta_diversity_through_plots/bdiv_even100/weighted_unifrac_2d_continuous
- qiime_test_data/beta_diversity_through_plots/bdiv_even100/weighted_unifrac_2d_continuous/20120314103518Hryqk403tviVCUAcIEld
- qiime_test_data/beta_diversity_through_plots/bdiv_even100/weighted_unifrac_2d_continuous/20120314103518Hryqk403tviVCUAcIEld/20120314103518EmNkA2eGuv0GvSLhwGE2
- qiime_test_data/beta_diversity_through_plots/bdiv_even100/weighted_unifrac_2d_continuous/20120314103518Hryqk403tviVCUAcIEld/20120314103518fpstHzNNCmlg2gCtCw7T
- qiime_test_data/beta_diversity_through_plots/bdiv_even100/weighted_unifrac_2d_continuous/js
- qiime_test_data/beta_diversity_through_plots/bdiv_even100/weighted_unifrac_2d_discrete
- qiime_test_data/beta_diversity_through_plots/bdiv_even100/weighted_unifrac_2d_discrete/20120314103519CNYPWnxMog7arQ59fwb1
- qiime_test_data/beta_diversity_through_plots/bdiv_even100/weighted_unifrac_2d_discrete/20120314103519CNYPWnxMog7arQ59fwb1/20120314103519eIUfCN05Q5WMhoUkCCkd
- qiime_test_data/beta_diversity_through_plots/bdiv_even100/weighted_unifrac_2d_discrete/20120314103519CNYPWnxMog7arQ59fwb1/20120314103520Gh1e66YuooMDqGDDvhHr
- qiime_test_data/beta_diversity_through_plots/bdiv_even100/weighted_unifrac_2d_discrete/js
- qiime_test_data/beta_diversity_through_plots/bdiv_even100/weighted_unifrac_2d_discrete/js/overlib.js
- qiime_test_data/beta_diversity_through_plots/bdiv_even100/weighted_unifrac_3d_continuous
- qiime_test_data/beta_diversity_through_plots/bdiv_even100/weighted_unifrac_3d_continuous/20120314103517gGBSA3wb1bDAxyfIDVmi
- qiime_test_data/beta_diversity_through_plots/bdiv_even100/weighted_unifrac_3d_continuous/jar
- qiime_test_data/beta_diversity_through_plots/bdiv_even100/weighted_unifrac_3d_discrete
- qiime_test_data/beta_diversity_through_plots/bdiv_even100/weighted_unifrac_3d_discrete/201203141035171vhb3FfoWwygGh0e6xV0
- qiime_test_data/beta_diversity_through_plots/bdiv_even100/weighted_unifrac_3d_discrete/jar
- qiime_test_data/beta_significance
- qiime_test_data/blast_wrapper
- qiime_test_data/check_id_map
- qiime_test_data/check_id_map/check_id_map_output
- qiime_test_data/cluster_quality
- qiime_test_data/collate_alpha
- qiime_test_data/collate_alpha/alpha_div
- qiime_test_data/collate_alpha/collated_alpha
- qiime_test_data/compare_3d_plots
- qiime_test_data/compare_3d_plots/20121016153539WaASawPaWWaLHPZgHOd1
- qiime_test_data/compare_3d_plots/201210161537065pMcHLnhtABdBtfrWgdZ
- qiime_test_data/compare_3d_plots/jar
- qiime_test_data/compare_3d_plots/test
- qiime_test_data/compare_3d_plots/test/201210161538412fUI0Yp4NuVH09lva2px
- qiime_test_data/compare_3d_plots/test/jar
- qiime_test_data/compare_3d_plots/test2
- qiime_test_data/compare_3d_plots/test2/20121016154637OspRgy5qLYlgIusCVuO0
- qiime_test_data/compare_3d_plots/test2/jar
- qiime_test_data/compare_3d_plots/test3
- qiime_test_data/compare_3d_plots/test3/201210161545061UTOUyGh1pvc1Y20knUr
- qiime_test_data/compare_3d_plots/test3/201210161546550oYUgytgsakDgvGgxxmY
- qiime_test_data/compare_3d_plots/test3/jar
- qiime_test_data/compare_alpha_diversity
- qiime_test_data/compare_categories
- qiime_test_data/compare_categories/adonis_out
- qiime_test_data/compare_categories/anosim_out
- qiime_test_data/compare_distance_matrices
- qiime_test_data/compare_distance_matrices/mantel_correlogram_out
- qiime_test_data/compare_distance_matrices/mantel_out
- qiime_test_data/compare_distance_matrices/partial_mantel_out
- qiime_test_data/compare_taxa_summaries
- qiime_test_data/compare_taxa_summaries/taxa_comp
- qiime_test_data/compare_taxa_summaries/taxa_comp_detailed
- qiime_test_data/compare_taxa_summaries/taxa_comp_one_tailed
- qiime_test_data/compare_taxa_summaries/taxa_comp_using_sample_id_map
- qiime_test_data/compute_core_microbiome
- qiime_test_data/compute_core_microbiome/otu_table_core
- qiime_test_data/compute_core_microbiome/otu_table_core_fast
- qiime_test_data/conditional_uncovered_probability
- qiime_test_data/consensus_tree
- qiime_test_data/consensus_tree/jackknifed_trees
- qiime_test_data/convert_fastaqual_fastq
- qiime_test_data/convert_fastaqual_fastq/fastaqual
- qiime_test_data/convert_fastaqual_fastq/fastq_files
- qiime_test_data/convert_otu_table_to_unifrac_sample_mapping
- qiime_test_data/convert_unifrac_sample_mapping_to_otu_table
- qiime_test_data/core_diversity_analyses
- qiime_test_data/core_diversity_analyses/core_output
- qiime_test_data/core_diversity_analyses/core_output/arare_max20
- qiime_test_data/core_diversity_analyses/core_output/arare_max20/alpha_div
- qiime_test_data/core_diversity_analyses/core_output/arare_max20/alpha_div_collated
- qiime_test_data/core_diversity_analyses/core_output/arare_max20/alpha_div_collated/PD_whole_tree.txt
- qiime_test_data/core_diversity_analyses/core_output/arare_max20/alpha_rarefaction_plots
- qiime_test_data/core_diversity_analyses/core_output/arare_max20/alpha_rarefaction_plots/average_plots
- qiime_test_data/core_diversity_analyses/core_output/arare_max20/alpha_rarefaction_plots/average_tables
- qiime_test_data/core_diversity_analyses/core_output/arare_max20/alpha_rarefaction_plots/html_plots
- qiime_test_data/core_diversity_analyses/core_output/arare_max20/rarefaction
- qiime_test_data/core_diversity_analyses/core_output/bdiv_even20
- qiime_test_data/core_diversity_analyses/core_output/bdiv_even20/unweighted_unifrac_2d_continuous
- qiime_test_data/core_diversity_analyses/core_output/bdiv_even20/unweighted_unifrac_2d_continuous/201305131219487HnFU21Vg0EX9KZPO0vI
- qiime_test_data/core_diversity_analyses/core_output/bdiv_even20/unweighted_unifrac_2d_continuous/201305131219487HnFU21Vg0EX9KZPO0vI/2013051312194859hEMkd5DZgWc2mVBwWi
- qiime_test_data/core_diversity_analyses/core_output/bdiv_even20/unweighted_unifrac_2d_continuous/201305131219487HnFU21Vg0EX9KZPO0vI/20130513121948dat4vHnDMPFGPvpebuYE
- qiime_test_data/core_diversity_analyses/core_output/bdiv_even20/unweighted_unifrac_2d_continuous/201305131219487HnFU21Vg0EX9KZPO0vI/20130513121949EqTRaLsEyPSe6PexXNeU
- qiime_test_data/core_diversity_analyses/core_output/bdiv_even20/unweighted_unifrac_2d_continuous/201305131219487HnFU21Vg0EX9KZPO0vI/20130513121949r3PlPhKO0Is1OvFpp766
- qiime_test_data/core_diversity_analyses/core_output/bdiv_even20/unweighted_unifrac_2d_continuous/js
- qiime_test_data/core_diversity_analyses/core_output/bdiv_even20/unweighted_unifrac_2d_discrete
- qiime_test_data/core_diversity_analyses/core_output/bdiv_even20/unweighted_unifrac_2d_discrete/20130513121950Ttbysp2BGycgd4t3tIOe
- qiime_test_data/core_diversity_analyses/core_output/bdiv_even20/unweighted_unifrac_2d_discrete/20130513121950Ttbysp2BGycgd4t3tIOe/201305131219500CYc6t7uRCqwUsoHgOSn
- qiime_test_data/core_diversity_analyses/core_output/bdiv_even20/unweighted_unifrac_2d_discrete/20130513121950Ttbysp2BGycgd4t3tIOe/20130513121950MeTCoRVuPyya0oGWmAig
- qiime_test_data/core_diversity_analyses/core_output/bdiv_even20/unweighted_unifrac_2d_discrete/20130513121950Ttbysp2BGycgd4t3tIOe/20130513121951gIMC2bdL0cqnN02D4YHK
- qiime_test_data/core_diversity_analyses/core_output/bdiv_even20/unweighted_unifrac_2d_discrete/20130513121950Ttbysp2BGycgd4t3tIOe/20130513121951sgeQxFEEg0gpDkfg70hH
- qiime_test_data/core_diversity_analyses/core_output/bdiv_even20/unweighted_unifrac_2d_discrete/js
- qiime_test_data/core_diversity_analyses/core_output/bdiv_even20/unweighted_unifrac_3d_continuous
- qiime_test_data/core_diversity_analyses/core_output/bdiv_even20/unweighted_unifrac_3d_continuous/20130513121947rnmQWf7T6c36Qb3Kfk6C
- qiime_test_data/core_diversity_analyses/core_output/bdiv_even20/unweighted_unifrac_3d_continuous/jar
- qiime_test_data/core_diversity_analyses/core_output/bdiv_even20/unweighted_unifrac_3d_discrete
- qiime_test_data/core_diversity_analyses/core_output/bdiv_even20/unweighted_unifrac_3d_discrete/20130513121947P7Tv5fZ0It0g6pknMovC
- qiime_test_data/core_diversity_analyses/core_output/bdiv_even20/unweighted_unifrac_3d_discrete/jar
- qiime_test_data/core_diversity_analyses/core_output/bdiv_even20/unweighted_unifrac_boxplots
- qiime_test_data/core_diversity_analyses/core_output/bdiv_even20/weighted_unifrac_2d_continuous
- qiime_test_data/core_diversity_analyses/core_output/bdiv_even20/weighted_unifrac_2d_continuous/20130513121943YuDddwagcSZ3aA0wmuml
- qiime_test_data/core_diversity_analyses/core_output/bdiv_even20/weighted_unifrac_2d_continuous/20130513121943YuDddwagcSZ3aA0wmuml/20130513121943CsP0WPGYQDkWcGIVQGCy
- qiime_test_data/core_diversity_analyses/core_output/bdiv_even20/weighted_unifrac_2d_continuous/20130513121943YuDddwagcSZ3aA0wmuml/20130513121943OPh6g1mMYtZRW7gmcs3u
- qiime_test_data/core_diversity_analyses/core_output/bdiv_even20/weighted_unifrac_2d_continuous/20130513121943YuDddwagcSZ3aA0wmuml/20130513121944n2BiX1T4iD9whBKhs7ON
- qiime_test_data/core_diversity_analyses/core_output/bdiv_even20/weighted_unifrac_2d_continuous/20130513121943YuDddwagcSZ3aA0wmuml/20130513121944ndtAh533m4lkmh9p3fFV
- qiime_test_data/core_diversity_analyses/core_output/bdiv_even20/weighted_unifrac_2d_continuous/js
- qiime_test_data/core_diversity_analyses/core_output/bdiv_even20/weighted_unifrac_2d_discrete
- qiime_test_data/core_diversity_analyses/core_output/bdiv_even20/weighted_unifrac_2d_discrete/20130513121945k9KhVP2kPvTE9CpCCxa3
- qiime_test_data/core_diversity_analyses/core_output/bdiv_even20/weighted_unifrac_2d_discrete/20130513121945k9KhVP2kPvTE9CpCCxa3/20130513121945QvLfGBgtrG9T5YtZMT4W
- qiime_test_data/core_diversity_analyses/core_output/bdiv_even20/weighted_unifrac_2d_discrete/20130513121945k9KhVP2kPvTE9CpCCxa3/20130513121945c456sNlPcPXYR4Uz1rq2
- qiime_test_data/core_diversity_analyses/core_output/bdiv_even20/weighted_unifrac_2d_discrete/20130513121945k9KhVP2kPvTE9CpCCxa3/20130513121946GHsvDOaulmy0B2Wvh6lV
- qiime_test_data/core_diversity_analyses/core_output/bdiv_even20/weighted_unifrac_2d_discrete/20130513121945k9KhVP2kPvTE9CpCCxa3/20130513121946ySuDoA93tb0l6EHcg0H4
- qiime_test_data/core_diversity_analyses/core_output/bdiv_even20/weighted_unifrac_2d_discrete/js
- qiime_test_data/core_diversity_analyses/core_output/bdiv_even20/weighted_unifrac_3d_continuous
- qiime_test_data/core_diversity_analyses/core_output/bdiv_even20/weighted_unifrac_3d_continuous/20130513121942zkLM2SApRT61m259vsuy
- qiime_test_data/core_diversity_analyses/core_output/bdiv_even20/weighted_unifrac_3d_continuous/jar
- qiime_test_data/core_diversity_analyses/core_output/bdiv_even20/weighted_unifrac_3d_discrete
- qiime_test_data/core_diversity_analyses/core_output/bdiv_even20/weighted_unifrac_3d_discrete/201305131219429vXz3YsXxOsVGAaSNmoS
- qiime_test_data/core_diversity_analyses/core_output/bdiv_even20/weighted_unifrac_3d_discrete/jar
- qiime_test_data/core_diversity_analyses/core_output/bdiv_even20/weighted_unifrac_boxplots
- qiime_test_data/core_diversity_analyses/core_output/taxa_plots
- qiime_test_data/core_diversity_analyses/core_output/taxa_plots/taxa_summary_plots
- qiime_test_data/core_diversity_analyses/core_output/taxa_plots/taxa_summary_plots/charts
- qiime_test_data/core_diversity_analyses/core_output/taxa_plots/taxa_summary_plots/css
- qiime_test_data/core_diversity_analyses/core_output/taxa_plots/taxa_summary_plots/js
- qiime_test_data/core_diversity_analyses/core_output/taxa_plots/taxa_summary_plots/raw_data
- qiime_test_data/core_diversity_analyses/core_output/taxa_plots_SampleType
- qiime_test_data/core_diversity_analyses/core_output/taxa_plots_SampleType/taxa_summary_plots
- qiime_test_data/core_diversity_analyses/core_output/taxa_plots_SampleType/taxa_summary_plots/charts
- qiime_test_data/core_diversity_analyses/core_output/taxa_plots_SampleType/taxa_summary_plots/css
- qiime_test_data/core_diversity_analyses/core_output/taxa_plots_SampleType/taxa_summary_plots/js
- qiime_test_data/core_diversity_analyses/core_output/taxa_plots_SampleType/taxa_summary_plots/raw_data
- qiime_test_data/core_diversity_analyses/core_output/taxa_plots_day
- qiime_test_data/core_diversity_analyses/core_output/taxa_plots_day/taxa_summary_plots
- qiime_test_data/core_diversity_analyses/core_output/taxa_plots_day/taxa_summary_plots/charts
- qiime_test_data/core_diversity_analyses/core_output/taxa_plots_day/taxa_summary_plots/css
- qiime_test_data/core_diversity_analyses/core_output/taxa_plots_day/taxa_summary_plots/js
- qiime_test_data/core_diversity_analyses/core_output/taxa_plots_day/taxa_summary_plots/raw_data
- qiime_test_data/count_seqs
- qiime_test_data/demultiplex_fasta
- qiime_test_data/demultiplex_fasta/demultiplexed_output
- qiime_test_data/demultiplex_fasta/demultiplexed_output_8bp_barcodes
- qiime_test_data/demultiplex_fasta/demultiplexed_output_Run1
- qiime_test_data/demultiplex_fasta/demultiplexed_output_Run2
- qiime_test_data/demultiplex_fasta/demultiplexed_output_comma_separated
- qiime_test_data/demultiplex_fasta/demultiplexed_output_run_prefix
- qiime_test_data/denoiser_preprocess
- qiime_test_data/denoiser_preprocess/preproc_out
- qiime_test_data/dissimilarity_mtx_stats
- qiime_test_data/dissimilarity_mtx_stats/dist_stats
- qiime_test_data/dissimilarity_mtx_stats/dists
- qiime_test_data/distance_matrix_from_mapping
- qiime_test_data/exclude_seqs_by_blast
- qiime_test_data/exclude_seqs_by_blast/exclude_seqs
- qiime_test_data/extract_seqs_by_sample_id
- qiime_test_data/filter_alignment
- qiime_test_data/filter_alignment/filtered_alignment
- qiime_test_data/filter_alignment/filtered_alignment_gap_95
- qiime_test_data/filter_distance_matrix
- qiime_test_data/filter_fasta
- qiime_test_data/filter_otus_by_sample
- qiime_test_data/filter_otus_by_sample/filtered_otus
- qiime_test_data/filter_otus_from_otu_table
- qiime_test_data/filter_samples_from_otu_table
- qiime_test_data/filter_taxa_from_otu_table
- qiime_test_data/filter_tree
- qiime_test_data/fix_arb_fasta
- qiime_test_data/identify_chimeric_seqs
- qiime_test_data/identify_chimeric_seqs/usearch61_chimera_checking
- qiime_test_data/identify_missing_files
- qiime_test_data/identify_missing_files/ALIGN_BQ7_
- qiime_test_data/inflate_denoiser_output
- qiime_test_data/inflate_denoiser_output/combined
- qiime_test_data/inflate_denoiser_output/combined/denoised_1st_half
- qiime_test_data/inflate_denoiser_output/combined/denoised_2nd_half
- qiime_test_data/inflate_denoiser_output/combined/split_libraries_output_1st_half
- qiime_test_data/inflate_denoiser_output/combined/split_libraries_output_2nd_half
- qiime_test_data/jackknifed_beta_diversity
- qiime_test_data/jackknifed_beta_diversity/bdiv_jk100
- qiime_test_data/jackknifed_beta_diversity/bdiv_jk100/rarefaction
- qiime_test_data/jackknifed_beta_diversity/bdiv_jk100/unweighted_unifrac
- qiime_test_data/jackknifed_beta_diversity/bdiv_jk100/unweighted_unifrac/2d_plots
- qiime_test_data/jackknifed_beta_diversity/bdiv_jk100/unweighted_unifrac/2d_plots/201203141316124KXlOiBdrkaa54Mltvdb
- qiime_test_data/jackknifed_beta_diversity/bdiv_jk100/unweighted_unifrac/2d_plots/201203141316124KXlOiBdrkaa54Mltvdb/20120314131612YrgEPHwzIk0EtSh6Rm0I
- qiime_test_data/jackknifed_beta_diversity/bdiv_jk100/unweighted_unifrac/2d_plots/201203141316124KXlOiBdrkaa54Mltvdb/20120314131613W0hr3u0kZhGboPPPBc7t
- qiime_test_data/jackknifed_beta_diversity/bdiv_jk100/unweighted_unifrac/2d_plots/201203141316124KXlOiBdrkaa54Mltvdb/20120314131614GQgcVDRYS9bHm2mKUdok
- qiime_test_data/jackknifed_beta_diversity/bdiv_jk100/unweighted_unifrac/2d_plots/201203141316124KXlOiBdrkaa54Mltvdb/20120314131614hzpcmzzyguwo6lR1H0Bn
- qiime_test_data/jackknifed_beta_diversity/bdiv_jk100/unweighted_unifrac/2d_plots/201203141316124KXlOiBdrkaa54Mltvdb/201203141316156wggBEigBvxMUoBVpXWz
- qiime_test_data/jackknifed_beta_diversity/bdiv_jk100/unweighted_unifrac/2d_plots/201203141316124KXlOiBdrkaa54Mltvdb/20120314131615di0gb5gLWxlWwC5yeDAx
- qiime_test_data/jackknifed_beta_diversity/bdiv_jk100/unweighted_unifrac/2d_plots/_2D_PCoA_plots.html
- qiime_test_data/jackknifed_beta_diversity/bdiv_jk100/unweighted_unifrac/2d_plots/js
- qiime_test_data/jackknifed_beta_diversity/bdiv_jk100/unweighted_unifrac/3d_plots
- qiime_test_data/jackknifed_beta_diversity/bdiv_jk100/unweighted_unifrac/3d_plots/20120314131616b5tAGFtF5ZLB2raSmgLU
- qiime_test_data/jackknifed_beta_diversity/bdiv_jk100/unweighted_unifrac/3d_plots/jar
- qiime_test_data/jackknifed_beta_diversity/bdiv_jk100/unweighted_unifrac/pcoa
- qiime_test_data/jackknifed_beta_diversity/bdiv_jk100/unweighted_unifrac/rare_dm
- qiime_test_data/jackknifed_beta_diversity/bdiv_jk100/unweighted_unifrac/rare_upgma
- qiime_test_data/jackknifed_beta_diversity/bdiv_jk100/unweighted_unifrac/upgma_cmp
- qiime_test_data/jackknifed_beta_diversity/bdiv_jk100/weighted_unifrac
- qiime_test_data/jackknifed_beta_diversity/bdiv_jk100/weighted_unifrac/2d_plots
- qiime_test_data/jackknifed_beta_diversity/bdiv_jk100/weighted_unifrac/2d_plots/20120314131605YWzRkdXyVA0xAtMQALxN
- qiime_test_data/jackknifed_beta_diversity/bdiv_jk100/weighted_unifrac/2d_plots/20120314131605YWzRkdXyVA0xAtMQALxN/201203141316054pAC0U0a04D2VU4n3CAg
- qiime_test_data/jackknifed_beta_diversity/bdiv_jk100/weighted_unifrac/2d_plots/20120314131605YWzRkdXyVA0xAtMQALxN/201203141316069wTH6UY0AOp0PixtE5tW
- qiime_test_data/jackknifed_beta_diversity/bdiv_jk100/weighted_unifrac/2d_plots/20120314131605YWzRkdXyVA0xAtMQALxN/20120314131606LGpie5MuLbrK4hYf36cU
- qiime_test_data/jackknifed_beta_diversity/bdiv_jk100/weighted_unifrac/2d_plots/20120314131605YWzRkdXyVA0xAtMQALxN/201203141316076tnNkEV0fZSHz2Zzmbaq
- qiime_test_data/jackknifed_beta_diversity/bdiv_jk100/weighted_unifrac/2d_plots/20120314131605YWzRkdXyVA0xAtMQALxN/20120314131607CFpTo7LmlEbyK3T3ilEE
- qiime_test_data/jackknifed_beta_diversity/bdiv_jk100/weighted_unifrac/2d_plots/20120314131605YWzRkdXyVA0xAtMQALxN/20120314131608m9lNDGgTHY2UmPgrNAre
- qiime_test_data/jackknifed_beta_diversity/bdiv_jk100/weighted_unifrac/2d_plots/js
- qiime_test_data/jackknifed_beta_diversity/bdiv_jk100/weighted_unifrac/3d_plots
- qiime_test_data/jackknifed_beta_diversity/bdiv_jk100/weighted_unifrac/3d_plots/20120314131609AgllPuN1aGg342tlFt2o
- qiime_test_data/jackknifed_beta_diversity/bdiv_jk100/weighted_unifrac/3d_plots/jar
- qiime_test_data/jackknifed_beta_diversity/bdiv_jk100/weighted_unifrac/pcoa
- qiime_test_data/jackknifed_beta_diversity/bdiv_jk100/weighted_unifrac/rare_dm
- qiime_test_data/jackknifed_beta_diversity/bdiv_jk100/weighted_unifrac/rare_upgma
- qiime_test_data/jackknifed_beta_diversity/bdiv_jk100/weighted_unifrac/upgma_cmp
- qiime_test_data/load_remote_mapping_file
- qiime_test_data/make_2d_plots
- qiime_test_data/make_2d_plots/20121016150418fvEtn34Xui5ZGvKhQnhI
- qiime_test_data/make_2d_plots/20121016150418fvEtn34Xui5ZGvKhQnhI/201210161504183YSZLtkVlW0WiMeW1hw5
- qiime_test_data/make_2d_plots/20121016150418fvEtn34Xui5ZGvKhQnhI/20121016150418yGn50OalsFKxVgdCPKHV
- qiime_test_data/make_2d_plots/20121016150418fvEtn34Xui5ZGvKhQnhI/20121016150419dazkbiLaQpqTxIbSz2HR
- qiime_test_data/make_2d_plots/20121016150418fvEtn34Xui5ZGvKhQnhI/20121016150419o1Rv7IQSdPYPmFSLR0Mp
- qiime_test_data/make_2d_plots/20121016150418fvEtn34Xui5ZGvKhQnhI/20121016150420RH7QimybYhiSMYayO5qF
- qiime_test_data/make_2d_plots/20121016150418fvEtn34Xui5ZGvKhQnhI/20121016150420aDFutSkIU91iUxOKfLer
- qiime_test_data/make_2d_plots/20121016150441FneURRPQ3TIvFUySfGZg
- qiime_test_data/make_2d_plots/20121016150441FneURRPQ3TIvFUySfGZg/20121016150441YgWyD9TKTvkxolKSTB0D
- qiime_test_data/make_2d_plots/20121016150454Ll4EIvhlOtME3ZB24iOE
- qiime_test_data/make_2d_plots/20121016150454Ll4EIvhlOtME3ZB24iOE/20121016150454Dt11u49Ld4DFd05HgbN3
- qiime_test_data/make_2d_plots/20121016150454Ll4EIvhlOtME3ZB24iOE/201210161504559CaeyTXq6cvBD72kXQU7
- qiime_test_data/make_2d_plots/20121016150454Ll4EIvhlOtME3ZB24iOE/20121016150455PbRxRwl0uQp91000stgB
- qiime_test_data/make_2d_plots/20121016150454Ll4EIvhlOtME3ZB24iOE/20121016150456FeeuBdhygXkuGgrGeVzn
- qiime_test_data/make_2d_plots/20121016150454Ll4EIvhlOtME3ZB24iOE/20121016150456os1oHWmcH5xal2tYRcnD
- qiime_test_data/make_2d_plots/20121016150454Ll4EIvhlOtME3ZB24iOE/20121016150457fTuYkZLKssYEoPRIrkmK
- qiime_test_data/make_2d_plots/20121016150454Ll4EIvhlOtME3ZB24iOE/20121016150457nZgflu6OEO64tF7xoRFG
- qiime_test_data/make_2d_plots/201210161505024UcKASqirfxUIpDmlyWE
- qiime_test_data/make_2d_plots/201210161505024UcKASqirfxUIpDmlyWE/20121016150502RVgilhcBleFnMWi6ndGG
- qiime_test_data/make_2d_plots/201210161505024UcKASqirfxUIpDmlyWE/20121016150503WA6HUI4W4nbtC0YGS19A
- qiime_test_data/make_2d_plots/201210161505024UcKASqirfxUIpDmlyWE/20121016150503p2Tq2Bnf0PVHQmupiGMk
- qiime_test_data/make_2d_plots/201210161505024UcKASqirfxUIpDmlyWE/20121016150504C6EdpKyfMKYuMtZGiGLO
- qiime_test_data/make_2d_plots/201210161505024UcKASqirfxUIpDmlyWE/20121016150504Fogr95nWRxpY1CPPPZOM
- qiime_test_data/make_2d_plots/201210161505024UcKASqirfxUIpDmlyWE/20121016150505VGWEdylGluXosgtfR0I1
- qiime_test_data/make_2d_plots/20121016150511ED4PikD6rsXgDMHLYmPo
- qiime_test_data/make_2d_plots/20121016150511ED4PikD6rsXgDMHLYmPo/20121016150511365u20ZGT5vgLoHQmet0
- qiime_test_data/make_2d_plots/20121016150511ED4PikD6rsXgDMHLYmPo/20121016150512GIx3mmRLLlrshskqIioX
- qiime_test_data/make_2d_plots/20121016150521AsYMBmMaRBb3IknrAMmc
- qiime_test_data/make_2d_plots/20121016150521AsYMBmMaRBb3IknrAMmc/20121016150521b2Dag0vPefYGgCaKv9iX
- qiime_test_data/make_2d_plots/2d_plots
- qiime_test_data/make_2d_plots/2d_plots/20121016150435WPwKGTk0axMFYktB6pas
- qiime_test_data/make_2d_plots/2d_plots/20121016150435WPwKGTk0axMFYktB6pas/20121016150435AV05YZRmpLfCRTPg7x0D
- qiime_test_data/make_2d_plots/2d_plots/20121016150435WPwKGTk0axMFYktB6pas/20121016150435gd4YOzXG4q40mgE7URLN
- qiime_test_data/make_2d_plots/2d_plots/20121016150435WPwKGTk0axMFYktB6pas/201210161504360EGbsRnhbYig3659knZg
- qiime_test_data/make_2d_plots/2d_plots/20121016150435WPwKGTk0axMFYktB6pas/20121016150436Uz0eWzgf6mGoeugonb5D
- qiime_test_data/make_2d_plots/2d_plots/20121016150435WPwKGTk0axMFYktB6pas/201210161504373uBrUiMyh1WGG7QLSFu1
- qiime_test_data/make_2d_plots/2d_plots/20121016150435WPwKGTk0axMFYktB6pas/20121016150437CmDWQtMerssseC5npIaG
- qiime_test_data/make_2d_plots/2d_plots/js
- qiime_test_data/make_2d_plots/js
- qiime_test_data/make_2d_plots/pcoa
- qiime_test_data/make_3d_plots
- qiime_test_data/make_3d_plots/20121016135550x0gsWnYKc1VqGICCg9Gf
- qiime_test_data/make_3d_plots/201210161356063GtH6cPf1OY03WgK3ohA
- qiime_test_data/make_3d_plots/20121016135639uTR1AVms6Rsw42DfM2W6
- qiime_test_data/make_3d_plots/201210161357081EU4wzIZq07nZa7Xnr07
- qiime_test_data/make_3d_plots/20121016135724lPuDS9I70TxcGr5ZISDy
- qiime_test_data/make_3d_plots/20121016135734pYG1fmI04R7tBowaOiOS
- qiime_test_data/make_3d_plots/20121016135946wi5FKkYvODQbWHcGo2TC
- qiime_test_data/make_3d_plots/20121016140120BwbUdx5rK45eGhMZG971
- qiime_test_data/make_3d_plots/3d_plots
- qiime_test_data/make_3d_plots/3d_plots/20121016135657XgewxaageDMui1gr0e3K
- qiime_test_data/make_3d_plots/3d_plots/jar
- qiime_test_data/make_3d_plots/jar
- qiime_test_data/make_3d_plots/pcoa
- qiime_test_data/make_bipartite_network
- qiime_test_data/make_bipartite_network/bipartite_network
- qiime_test_data/make_bipartite_network/bipartite_network_combo_colors
- qiime_test_data/make_bootstrapped_tree
- qiime_test_data/make_distance_boxplots
- qiime_test_data/make_distance_boxplots/out1
- qiime_test_data/make_distance_boxplots/out2
- qiime_test_data/make_distance_boxplots/out3
- qiime_test_data/make_distance_boxplots/out4
- qiime_test_data/make_distance_comparison_plots
- qiime_test_data/make_distance_comparison_plots/out1
- qiime_test_data/make_distance_histograms
- qiime_test_data/make_distance_histograms/example1
- qiime_test_data/make_distance_histograms/example1/distances2012112713525429YqGU7Pswa1Yu4lTghU
- qiime_test_data/make_distance_histograms/example1/distances2012112713525429YqGU7Pswa1Yu4lTghU/group_distances_pairs
- qiime_test_data/make_distance_histograms/example1/distances2012112713525429YqGU7Pswa1Yu4lTghU/group_distances_single
- qiime_test_data/make_distance_histograms/example1/histograms
- qiime_test_data/make_distance_histograms/example1/js
- qiime_test_data/make_distance_histograms/example2
- qiime_test_data/make_distance_histograms/example2/distances20121127135301gmOtk4xpgR700oW0gUU9
- qiime_test_data/make_distance_histograms/example2/distances20121127135301gmOtk4xpgR700oW0gUU9/group_distances_pairs
- qiime_test_data/make_distance_histograms/example2/distances20121127135301gmOtk4xpgR700oW0gUU9/group_distances_single
- qiime_test_data/make_distance_histograms/example2/histograms
- qiime_test_data/make_distance_histograms/example2/js
- qiime_test_data/make_distance_histograms/example3
- qiime_test_data/make_distance_histograms/example3/distances20121127135312vhCarwrlA00fW03gaIgz
- qiime_test_data/make_distance_histograms/example3/distances20121127135312vhCarwrlA00fW03gaIgz/group_distances_pairs
- qiime_test_data/make_distance_histograms/example3/distances20121127135312vhCarwrlA00fW03gaIgz/group_distances_single
- qiime_test_data/make_distance_histograms/example4
- qiime_test_data/make_distance_histograms/example4/distances20121127135321TaZwcSpLECIaQQTLNUzD
- qiime_test_data/make_distance_histograms/example4/distances20121127135321TaZwcSpLECIaQQTLNUzD/group_distances_pairs
- qiime_test_data/make_distance_histograms/example4/distances20121127135321TaZwcSpLECIaQQTLNUzD/group_distances_single
- qiime_test_data/make_distance_histograms/example4/histograms
- qiime_test_data/make_distance_histograms/example4/js
- qiime_test_data/make_fastq
- qiime_test_data/make_fastq/seqs.fna.fastq_example
- qiime_test_data/make_otu_heatmap_html
- qiime_test_data/make_otu_heatmap_html/heatmap
- qiime_test_data/make_otu_heatmap_html/heatmap/js
- qiime_test_data/make_otu_heatmap_html/heatmap_mc10
- qiime_test_data/make_otu_heatmap_html/heatmap_mc10/js
- qiime_test_data/make_otu_heatmap_html/heatmap_sample_otu_sorted
- qiime_test_data/make_otu_heatmap_html/heatmap_sample_otu_sorted/js
- qiime_test_data/make_otu_heatmap_html/heatmap_sample_sorted
- qiime_test_data/make_otu_heatmap_html/heatmap_sample_sorted/js
- qiime_test_data/make_otu_network
- qiime_test_data/make_otu_network/otu_network
- qiime_test_data/make_otu_network/otu_network/otu_network
- qiime_test_data/make_otu_network/otu_network/otu_network/props
- qiime_test_data/make_otu_network/otu_network/otu_network/stats
- qiime_test_data/make_otu_table
- qiime_test_data/make_phylogeny
- qiime_test_data/make_prefs_file
- qiime_test_data/make_qiime_py_file
- qiime_test_data/make_rarefaction_plots
- qiime_test_data/make_rarefaction_plots/20121016103250vWTDszB6VNkZdPui0XnH
- qiime_test_data/make_rarefaction_plots/20121016103250vWTDszB6VNkZdPui0XnH/average_plots
- qiime_test_data/make_rarefaction_plots/20121016103250vWTDszB6VNkZdPui0XnH/average_plots/chao1DOB.png
- qiime_test_data/make_rarefaction_plots/20121016103250vWTDszB6VNkZdPui0XnH/average_tables
- qiime_test_data/make_rarefaction_plots/20121016103250vWTDszB6VNkZdPui0XnH/html_plots
- qiime_test_data/make_rarefaction_plots/20121016103516LTRfZhI7u0YbNGGB1CRA
- qiime_test_data/make_rarefaction_plots/20121016103516LTRfZhI7u0YbNGGB1CRA/average_plots
- qiime_test_data/make_rarefaction_plots/20121016103516LTRfZhI7u0YbNGGB1CRA/average_plots/chao1DOB.pdf
- qiime_test_data/make_rarefaction_plots/20121016103516LTRfZhI7u0YbNGGB1CRA/average_tables
- qiime_test_data/make_rarefaction_plots/20121016103516LTRfZhI7u0YbNGGB1CRA/html_plots
- qiime_test_data/make_rarefaction_plots/20121016103654zN6g9z3VZ0VWonBeH065
- qiime_test_data/make_rarefaction_plots/20121016103654zN6g9z3VZ0VWonBeH065/average_plots
- qiime_test_data/make_rarefaction_plots/20121016103654zN6g9z3VZ0VWonBeH065/average_plots/chao1DOB.png
- qiime_test_data/make_rarefaction_plots/20121016103654zN6g9z3VZ0VWonBeH065/average_tables
- qiime_test_data/make_rarefaction_plots/20121016103654zN6g9z3VZ0VWonBeH065/html_plots
- qiime_test_data/make_rarefaction_plots/20121016103836qLgrhV6CcQSaelPlWmGy
- qiime_test_data/make_rarefaction_plots/20121016103836qLgrhV6CcQSaelPlWmGy/average_plots
- qiime_test_data/make_rarefaction_plots/20121016103836qLgrhV6CcQSaelPlWmGy/average_plots/chao1DOB.png
- qiime_test_data/make_rarefaction_plots/20121016103836qLgrhV6CcQSaelPlWmGy/average_tables
- qiime_test_data/make_rarefaction_plots/20121016103836qLgrhV6CcQSaelPlWmGy/html_plots
- qiime_test_data/make_rarefaction_plots/20121016104048RITiNDEPHDwvegX0ZnX2
- qiime_test_data/make_rarefaction_plots/20121016104048RITiNDEPHDwvegX0ZnX2/average_plots
- qiime_test_data/make_rarefaction_plots/20121016104048RITiNDEPHDwvegX0ZnX2/average_plots/chao1DOB.png
- qiime_test_data/make_rarefaction_plots/20121016104048RITiNDEPHDwvegX0ZnX2/average_tables
- qiime_test_data/make_rarefaction_plots/20121016104048RITiNDEPHDwvegX0ZnX2/html_plots
- qiime_test_data/make_rarefaction_plots/alpha_div_collated
- qiime_test_data/make_tep
- qiime_test_data/make_tep/make_tep_output
- qiime_test_data/map_reads_to_reference
- qiime_test_data/map_reads_to_reference/blat-nt_mapped
- qiime_test_data/map_reads_to_reference/blat_mapped
- qiime_test_data/map_reads_to_reference/blat_mapped_strict
- qiime_test_data/map_reads_to_reference/bwa-short_mapped
- qiime_test_data/map_reads_to_reference/bwa-sw_mapped
- qiime_test_data/map_reads_to_reference/usearch_mapped
- qiime_test_data/merge_mapping_files
- qiime_test_data/merge_otu_maps
- qiime_test_data/merge_otu_tables
- qiime_test_data/multiple_rarefactions
- qiime_test_data/multiple_rarefactions/rarefied_otu_tables
- qiime_test_data/multiple_rarefactions_even_depth
- qiime_test_data/multiple_rarefactions_even_depth/rarefied_otu_tables
- qiime_test_data/neighbor_joining
- qiime_test_data/neighbor_joining/beta_div_weighted_clusters
- qiime_test_data/neighbor_joining/beta_div_weighted_unifrac
- qiime_test_data/nmds
- qiime_test_data/nmds/beta_div_weighted_nmds_results
- qiime_test_data/nmds/beta_div_weighted_unifrac
- qiime_test_data/otu_category_significance
- qiime_test_data/otu_category_significance/rarefied_otu_tables
- qiime_test_data/otu_category_significance/rarefied_table_results
- qiime_test_data/parallel_align_seqs_pynast
- qiime_test_data/parallel_align_seqs_pynast/jobs
- qiime_test_data/parallel_align_seqs_pynast/pynast_aligned_seqs
- qiime_test_data/parallel_alpha_diversity
- qiime_test_data/parallel_alpha_diversity/adiv
- qiime_test_data/parallel_alpha_diversity/rarefied_otu_tables
- qiime_test_data/parallel_assign_taxonomy_blast
- qiime_test_data/parallel_assign_taxonomy_blast/blast_assigned_taxonomy
- qiime_test_data/parallel_assign_taxonomy_rdp
- qiime_test_data/parallel_assign_taxonomy_rdp/jobs
- qiime_test_data/parallel_assign_taxonomy_rdp/rdp_assigned_taxonomy
- qiime_test_data/parallel_beta_diversity
- qiime_test_data/parallel_beta_diversity/bdiv
- qiime_test_data/parallel_beta_diversity/bdiv_single
- qiime_test_data/parallel_beta_diversity/bdiv_single/0
- qiime_test_data/parallel_beta_diversity/jobs
- qiime_test_data/parallel_beta_diversity/rarefied_otu_tables
- qiime_test_data/parallel_blast
- qiime_test_data/parallel_blast/blast_out
- qiime_test_data/parallel_blast/jobs
- qiime_test_data/parallel_identify_chimeric_seqs
- qiime_test_data/parallel_map_reads_to_reference
- qiime_test_data/parallel_map_reads_to_reference/blat_mapped
- qiime_test_data/parallel_map_reads_to_reference/bwa-short_mapped
- qiime_test_data/parallel_map_reads_to_reference/usearch_mapped
- qiime_test_data/parallel_multiple_rarefactions
- qiime_test_data/parallel_multiple_rarefactions/even_otu_tables
- qiime_test_data/parallel_multiple_rarefactions/jobs
- qiime_test_data/parallel_multiple_rarefactions/rarefied_otu_tables
- qiime_test_data/parallel_pick_otus_blast
- qiime_test_data/parallel_pick_otus_blast/blast_otus
- qiime_test_data/parallel_pick_otus_trie
- qiime_test_data/parallel_pick_otus_trie/trie_otus
- qiime_test_data/parallel_pick_otus_uclust_ref
- qiime_test_data/parallel_pick_otus_uclust_ref/ucref_otus
- qiime_test_data/parallel_pick_otus_usearch61_ref
- qiime_test_data/parallel_pick_otus_usearch61_ref/usearch_ref_otus
- qiime_test_data/pick_closed_reference_otus
- qiime_test_data/pick_closed_reference_otus/otus
- qiime_test_data/pick_closed_reference_otus/otus/uclust_ref_picked_otus
- qiime_test_data/pick_closed_reference_otus/otus_usearch
- qiime_test_data/pick_closed_reference_otus/otus_usearch/usearch_ref_picked_otus
- qiime_test_data/pick_closed_reference_otus/otus_w_tax
- qiime_test_data/pick_closed_reference_otus/otus_w_tax/uclust_ref_picked_otus
- qiime_test_data/pick_de_novo_otus
- qiime_test_data/pick_de_novo_otus/otus
- qiime_test_data/pick_de_novo_otus/otus/pynast_aligned_seqs
- qiime_test_data/pick_de_novo_otus/otus/rdp_assigned_taxonomy
- qiime_test_data/pick_de_novo_otus/otus/rep_set
- qiime_test_data/pick_de_novo_otus/otus/uclust_picked_otus
- qiime_test_data/pick_open_reference_otus
- qiime_test_data/pick_open_reference_otus/ucrss
- qiime_test_data/pick_open_reference_otus/ucrss/prefilter_otus
- qiime_test_data/pick_open_reference_otus/ucrss/pynast_aligned_seqs
- qiime_test_data/pick_open_reference_otus/ucrss/rdp_assigned_taxonomy
- qiime_test_data/pick_open_reference_otus/ucrss/step1_otus
- qiime_test_data/pick_open_reference_otus/ucrss/step2_otus
- qiime_test_data/pick_open_reference_otus/ucrss/step3_otus
- qiime_test_data/pick_open_reference_otus/ucrss/step4_otus
- qiime_test_data/pick_open_reference_otus/ucrss_iter
- qiime_test_data/pick_open_reference_otus/ucrss_iter/0
- qiime_test_data/pick_open_reference_otus/ucrss_iter/0/prefilter_otus
- qiime_test_data/pick_open_reference_otus/ucrss_iter/0/step1_otus
- qiime_test_data/pick_open_reference_otus/ucrss_iter/0/step2_otus
- qiime_test_data/pick_open_reference_otus/ucrss_iter/0/step3_otus
- qiime_test_data/pick_open_reference_otus/ucrss_iter/0/step4_otus
- qiime_test_data/pick_open_reference_otus/ucrss_iter/1
- qiime_test_data/pick_open_reference_otus/ucrss_iter/1/prefilter_otus
- qiime_test_data/pick_open_reference_otus/ucrss_iter/1/step1_otus
- qiime_test_data/pick_open_reference_otus/ucrss_iter/1/step2_otus
- qiime_test_data/pick_open_reference_otus/ucrss_iter/1/step3_otus
- qiime_test_data/pick_open_reference_otus/ucrss_iter/1/step4_otus
- qiime_test_data/pick_open_reference_otus/ucrss_iter/pynast_aligned_seqs
- qiime_test_data/pick_open_reference_otus/ucrss_iter/rdp_assigned_taxonomy
- qiime_test_data/pick_open_reference_otus/ucrss_iter_no_tax
- qiime_test_data/pick_open_reference_otus/ucrss_iter_no_tax/0
- qiime_test_data/pick_open_reference_otus/ucrss_iter_no_tax/0/prefilter_otus
- qiime_test_data/pick_open_reference_otus/ucrss_iter_no_tax/0/step1_otus
- qiime_test_data/pick_open_reference_otus/ucrss_iter_no_tax/0/step2_otus
- qiime_test_data/pick_open_reference_otus/ucrss_iter_no_tax/0/step2_otus/subsampled_failures_otus.log
- qiime_test_data/pick_open_reference_otus/ucrss_iter_no_tax/0/step2_otus/subsampled_failures_otus.txt
- qiime_test_data/pick_open_reference_otus/ucrss_iter_no_tax/0/step3_otus
- qiime_test_data/pick_open_reference_otus/ucrss_iter_no_tax/0/step4_otus
- qiime_test_data/pick_open_reference_otus/ucrss_iter_no_tax/1
- qiime_test_data/pick_open_reference_otus/ucrss_iter_no_tax/1/prefilter_otus
- qiime_test_data/pick_open_reference_otus/ucrss_iter_no_tax/1/step1_otus
- qiime_test_data/pick_open_reference_otus/ucrss_iter_no_tax/1/step2_otus
- qiime_test_data/pick_open_reference_otus/ucrss_iter_no_tax/1/step2_otus/subsampled_failures_otus.log
- qiime_test_data/pick_open_reference_otus/ucrss_iter_no_tax/1/step2_otus/subsampled_failures_otus.txt
- qiime_test_data/pick_open_reference_otus/ucrss_iter_no_tax/1/step3_otus
- qiime_test_data/pick_open_reference_otus/ucrss_iter_no_tax/1/step4_otus
- qiime_test_data/pick_open_reference_otus/ucrss_iter_no_tax/pynast_aligned_seqs
- qiime_test_data/pick_open_reference_otus/ucrss_iter_no_tax/pynast_aligned_seqs/rep_set_aligned.fasta
- qiime_test_data/pick_open_reference_otus/ucrss_iter_no_tree
- qiime_test_data/pick_open_reference_otus/ucrss_iter_no_tree/0
- qiime_test_data/pick_open_reference_otus/ucrss_iter_no_tree/0/prefilter_otus
- qiime_test_data/pick_open_reference_otus/ucrss_iter_no_tree/0/step1_otus
- qiime_test_data/pick_open_reference_otus/ucrss_iter_no_tree/0/step2_otus
- qiime_test_data/pick_open_reference_otus/ucrss_iter_no_tree/0/step3_otus
- qiime_test_data/pick_open_reference_otus/ucrss_iter_no_tree/0/step4_otus
- qiime_test_data/pick_open_reference_otus/ucrss_iter_no_tree/1
- qiime_test_data/pick_open_reference_otus/ucrss_iter_no_tree/1/prefilter_otus
- qiime_test_data/pick_open_reference_otus/ucrss_iter_no_tree/1/step1_otus
- qiime_test_data/pick_open_reference_otus/ucrss_iter_no_tree/1/step2_otus
- qiime_test_data/pick_open_reference_otus/ucrss_iter_no_tree/1/step3_otus
- qiime_test_data/pick_open_reference_otus/ucrss_iter_no_tree/1/step4_otus
- qiime_test_data/pick_open_reference_otus/ucrss_iter_no_tree/rdp_assigned_taxonomy
- qiime_test_data/pick_open_reference_otus/ucrss_usearch
- qiime_test_data/pick_open_reference_otus/ucrss_usearch/prefilter_otus
- qiime_test_data/pick_open_reference_otus/ucrss_usearch/pynast_aligned_seqs
- qiime_test_data/pick_open_reference_otus/ucrss_usearch/rdp_assigned_taxonomy
- qiime_test_data/pick_open_reference_otus/ucrss_usearch/step1_otus
- qiime_test_data/pick_open_reference_otus/ucrss_usearch/step2_otus
- qiime_test_data/pick_open_reference_otus/ucrss_usearch/step3_otus
- qiime_test_data/pick_open_reference_otus/ucrss_usearch/step4_otus
- qiime_test_data/pick_otus
- qiime_test_data/pick_otus/blast_picked_otus
- qiime_test_data/pick_otus/blast_picked_otus_90_percent
- qiime_test_data/pick_otus/blast_picked_otus_prebuilt_db
- qiime_test_data/pick_otus/cdhit_picked_otus
- qiime_test_data/pick_otus/cdhit_picked_otus_filter
- qiime_test_data/pick_otus/cdhit_picked_otus_trie_prefilter
- qiime_test_data/pick_otus/mothur_picked_otus
- qiime_test_data/pick_otus/mothur_picked_otus_90_percent
- qiime_test_data/pick_otus/mothur_picked_otus_nn
- qiime_test_data/pick_otus/picked_otus_90_percent_rev
- qiime_test_data/pick_otus/picked_otus_default
- qiime_test_data/pick_otus/prefix_suffix_picked_otus
- qiime_test_data/pick_otus/uclust_ref_picked_otus
- qiime_test_data/pick_otus/usearch_qf_results
- qiime_test_data/pick_otus/usearch_qf_results_no_ref_chim_detection
- qiime_test_data/pick_otus/usearch_qf_results_no_ref_chim_detection/usearch_cluster_err_corrected.log
- qiime_test_data/pick_rep_set
- qiime_test_data/plot_rank_abundance_graph
- qiime_test_data/plot_semivariogram
- qiime_test_data/plot_taxa_summary
- qiime_test_data/plot_taxa_summary/class_pie_n10_charts
- qiime_test_data/plot_taxa_summary/class_pie_n10_charts/charts
- qiime_test_data/plot_taxa_summary/class_pie_n10_charts/css
- qiime_test_data/plot_taxa_summary/class_pie_n10_charts/js
- qiime_test_data/plot_taxa_summary/class_pie_n10_charts/raw_data
- qiime_test_data/plot_taxa_summary/phylum_charts
- qiime_test_data/plot_taxa_summary/phylum_charts/charts
- qiime_test_data/plot_taxa_summary/phylum_charts/css
- qiime_test_data/plot_taxa_summary/phylum_charts/js
- qiime_test_data/plot_taxa_summary/phylum_charts/raw_data
- qiime_test_data/plot_taxa_summary/phylum_class_genus_charts
- qiime_test_data/plot_taxa_summary/phylum_class_genus_charts/charts
- qiime_test_data/plot_taxa_summary/phylum_class_genus_charts/css
- qiime_test_data/plot_taxa_summary/phylum_class_genus_charts/js
- qiime_test_data/plot_taxa_summary/phylum_class_genus_charts/raw_data
- qiime_test_data/plot_taxa_summary/sample_charts
- qiime_test_data/plot_taxa_summary/sample_charts/charts
- qiime_test_data/plot_taxa_summary/sample_charts/css
- qiime_test_data/plot_taxa_summary/sample_charts/js
- qiime_test_data/plot_taxa_summary/sample_charts/raw_data
- qiime_test_data/poller
- qiime_test_data/principal_coordinates
- qiime_test_data/principal_coordinates/beta_div_weighted_pcoa_results
- qiime_test_data/principal_coordinates/beta_div_weighted_unifrac
- qiime_test_data/print_metadata_stats
- qiime_test_data/quality_scores_plot
- qiime_test_data/quality_scores_plot/quality_histograms
- qiime_test_data/relatedness
- qiime_test_data/shared_phylotypes
- qiime_test_data/shared_phylotypes/rarefied_otu_tables
- qiime_test_data/shared_phylotypes/shared_otus
- qiime_test_data/simsam
- qiime_test_data/simsam/simsam_out1
- qiime_test_data/simsam/simsam_out2
- qiime_test_data/single_rarefaction
- qiime_test_data/sort_otu_table
- qiime_test_data/split_fasta_on_sample_ids
- qiime_test_data/split_fasta_on_sample_ids/out
- qiime_test_data/split_libraries
- qiime_test_data/split_libraries/Split_Library_Output
- qiime_test_data/split_libraries/Split_Library_Output_comma_separated
- qiime_test_data/split_libraries/Split_Library_Run1_Output
- qiime_test_data/split_libraries/Split_Library_Run2_Output
- qiime_test_data/split_libraries/split_Library_output_8bp
- qiime_test_data/split_libraries/split_libraries_output_revprimer
- qiime_test_data/split_libraries_fastq
- qiime_test_data/split_libraries_fastq/slout_q20
- qiime_test_data/split_libraries_fastq/slout_single_sample_q20
- qiime_test_data/split_otu_table
- qiime_test_data/split_otu_table/per_study_otu_tables
- qiime_test_data/split_otu_table_by_taxonomy
- qiime_test_data/split_otu_table_by_taxonomy/L3
- qiime_test_data/start_parallel_jobs
- qiime_test_data/start_parallel_jobs_sc
- qiime_test_data/start_parallel_jobs_torque
- qiime_test_data/subsample_fasta
- qiime_test_data/summarize_otu_by_cat
- qiime_test_data/summarize_taxa
- qiime_test_data/summarize_taxa/tax
- qiime_test_data/summarize_taxa/tax_mapping
- qiime_test_data/summarize_taxa_through_plots
- qiime_test_data/summarize_taxa_through_plots/taxa_summary
- qiime_test_data/summarize_taxa_through_plots/taxa_summary/taxa_summary_plots
- qiime_test_data/summarize_taxa_through_plots/taxa_summary/taxa_summary_plots/charts
- qiime_test_data/summarize_taxa_through_plots/taxa_summary/taxa_summary_plots/css
- qiime_test_data/summarize_taxa_through_plots/taxa_summary/taxa_summary_plots/js
- qiime_test_data/summarize_taxa_through_plots/taxa_summary/taxa_summary_plots/raw_data
- qiime_test_data/summarize_taxa_through_plots/taxa_summary_by_treatment
- qiime_test_data/summarize_taxa_through_plots/taxa_summary_by_treatment/taxa_summary_plots
- qiime_test_data/summarize_taxa_through_plots/taxa_summary_by_treatment/taxa_summary_plots/charts
- qiime_test_data/summarize_taxa_through_plots/taxa_summary_by_treatment/taxa_summary_plots/css
- qiime_test_data/summarize_taxa_through_plots/taxa_summary_by_treatment/taxa_summary_plots/js
- qiime_test_data/summarize_taxa_through_plots/taxa_summary_by_treatment/taxa_summary_plots/raw_data
- qiime_test_data/supervised_learning
- qiime_test_data/supervised_learning/ml
- qiime_test_data/supervised_learning/ml_cv10
- qiime_test_data/supervised_learning/ml_ntree1000
- qiime_test_data/supervised_learning/rarefied_tables
- qiime_test_data/supervised_learning/sl_rarefied_tables_cv10
- qiime_test_data/supervised_learning/sl_rarefied_tables_cv10/sl_rarefaction_100_0_Treatment
- qiime_test_data/supervised_learning/sl_rarefied_tables_cv10/sl_rarefaction_100_1_Treatment
- qiime_test_data/supervised_learning/sl_rarefied_tables_cv10/sl_rarefaction_100_2_Treatment
- qiime_test_data/supervised_learning/sl_rarefied_tables_cv10/sl_rarefaction_100_3_Treatment
- qiime_test_data/supervised_learning/sl_rarefied_tables_cv10/sl_rarefaction_100_4_Treatment
- qiime_test_data/supervised_learning/sl_rarefied_tables_cv10/sl_rarefaction_100_5_Treatment
- qiime_test_data/supervised_learning/sl_rarefied_tables_cv10/sl_rarefaction_100_6_Treatment
- qiime_test_data/supervised_learning/sl_rarefied_tables_cv10/sl_rarefaction_100_7_Treatment
- qiime_test_data/supervised_learning/sl_rarefied_tables_cv10/sl_rarefaction_100_8_Treatment
- qiime_test_data/supervised_learning/sl_rarefied_tables_cv10/sl_rarefaction_100_9_Treatment
- qiime_test_data/supervised_learning/sl_rarefied_tables_oob
- qiime_test_data/supervised_learning/sl_rarefied_tables_oob/sl_rarefaction_100_0_Treatment
- qiime_test_data/supervised_learning/sl_rarefied_tables_oob/sl_rarefaction_100_1_Treatment
- qiime_test_data/supervised_learning/sl_rarefied_tables_oob/sl_rarefaction_100_2_Treatment
- qiime_test_data/supervised_learning/sl_rarefied_tables_oob/sl_rarefaction_100_3_Treatment
- qiime_test_data/supervised_learning/sl_rarefied_tables_oob/sl_rarefaction_100_4_Treatment
- qiime_test_data/supervised_learning/sl_rarefied_tables_oob/sl_rarefaction_100_5_Treatment
- qiime_test_data/supervised_learning/sl_rarefied_tables_oob/sl_rarefaction_100_6_Treatment
- qiime_test_data/supervised_learning/sl_rarefied_tables_oob/sl_rarefaction_100_7_Treatment
- qiime_test_data/supervised_learning/sl_rarefied_tables_oob/sl_rarefaction_100_8_Treatment
- qiime_test_data/supervised_learning/sl_rarefied_tables_oob/sl_rarefaction_100_9_Treatment
- qiime_test_data/transform_coordinate_matrices
- qiime_test_data/transform_coordinate_matrices/mc_procrustes_output
- qiime_test_data/transform_coordinate_matrices/procrustes_output
- qiime_test_data/tree_compare
- qiime_test_data/tree_compare/bootstrapped_trees
- qiime_test_data/tree_compare/output
- qiime_test_data/trflp_file_to_otu_table
- qiime_test_data/truncate_fasta_qual_files
- qiime_test_data/truncate_fasta_qual_files/filtered_seqs
- qiime_test_data/truncate_reverse_primer
- qiime_test_data/truncate_reverse_primer/reverse_primer_removed
- qiime_test_data/unweight_fasta
- qiime_test_data/upgma_cluster
- qiime_test_data/upgma_cluster/beta_div_folder
- qiime_test_data/upgma_cluster/beta_div_folder_results
- tests/test_workflow
- files removed:
- .pc/fix_path_for_support_files/scripts
- .pc/fix_t_test_bug
- .pc/fix_t_test_bug/qiime
- .pc/fix_t_test_bug/scripts
- .pc/fix_t_test_bug/tests
- doc/_build
- qiime/support_files/denoiser/bin
- qiime/support_files/html_templates
- qiime_tutorial
- qiime_tutorial/18S_tutorial_files
- web
- web/home_static
- web/home_static/images
- web/home_static/nih-cloud-apr2012
- web/home_static/nih-cloud-apr2012/NIHCloudDemo_Complete_files
- web/home_static/nih-cloud-apr2012/NIHCloudDemo_Fast_files
- web/home_static/nih-cloud-apr2012/Timing_files
- web/home_static/nih-cloud-apr2012/VariableRegionPositionBoundaries_files
- files modified:
- .pc/applied-patches
added
removed
qiime_test_data/conditional_uncovered_probability/cup_lower_bound.txt
