1
python /Users/caporaso/code/Qiime/scripts/align_seqs.py -d /Users/caporaso/code/qiime_test_data/parallel_align_seqs_pynast/pynast_aligned_seqs//ALIGN_yw7_/core_set_aligned_imputed.fasta_11_8_07.no_dots -p 75.00 -e 1204 -m pynast -t /Users/caporaso/data/greengenes_core_sets/core_set_aligned_imputed.fasta_11_8_07.no_dots -a uclust -o /Users/caporaso/code/qiime_test_data/parallel_align_seqs_pynast/pynast_aligned_seqs//ALIGN_yw7_ -i /Users/caporaso/code/qiime_test_data/parallel_align_seqs_pynast/pynast_aligned_seqs/ALIGN_yw7_.0.fasta
2
mv /Users/caporaso/code/qiime_test_data/parallel_align_seqs_pynast/pynast_aligned_seqs//ALIGN_yw7_/ALIGN_yw7_.0_aligned.fasta /Users/caporaso/code/qiime_test_data/parallel_align_seqs_pynast/pynast_aligned_seqs//ALIGN_yw7_.0_aligned.fasta
3
mv /Users/caporaso/code/qiime_test_data/parallel_align_seqs_pynast/pynast_aligned_seqs//ALIGN_yw7_/ALIGN_yw7_.0_failures.fasta /Users/caporaso/code/qiime_test_data/parallel_align_seqs_pynast/pynast_aligned_seqs//ALIGN_yw7_.0_failures.fasta
4
mv /Users/caporaso/code/qiime_test_data/parallel_align_seqs_pynast/pynast_aligned_seqs//ALIGN_yw7_/ALIGN_yw7_.0_log.txt /Users/caporaso/code/qiime_test_data/parallel_align_seqs_pynast/pynast_aligned_seqs//ALIGN_yw7_.0_log.txt
b'\\ No newline at end of file'