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# uclust --maxrejects 500 --input /Users/caporaso/temp/UclustExactMatchFiltermkDU2bAPfzbCh4h9fHpC.fasta --id 0.97 --w 12 --stepwords 20 --rev --usersort --maxaccepts 20 --libonly --stable_sort --lib /Users/caporaso/code/Qiime/qiime_test_data/pick_open_reference_otus/ucrss_iter_no_tree/1/step2_otus/step2_rep_set.fna --uc /Users/caporaso/code/Qiime/qiime_test_data/pick_open_reference_otus/ucrss_iter_no_tree//1//step3_otus/failures_clusters.uc
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# Tab-separated fields:
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# 1=Type, 2=ClusterNr, 3=SeqLength or ClusterSize, 4=PctId, 5=Strand, 6=QueryStart, 7=SeedStart, 8=Alignment, 9=QueryLabel, 10=TargetLabel
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# Record types (field 1): L=LibSeed, S=NewSeed, H=Hit, R=Reject, D=LibCluster, C=NewCluster, N=NoHit
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# For C and D types, PctId is average id with seed.
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# QueryStart and SeedStart are zero-based relative to start of sequence.
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# If minus strand, SeedStart is relative to reverse-complemented seed.
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L 0 133 * * * * * New.1.ReferenceOTU0 f6_30 *
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H 0 133 100.0 + 0 0 133M QiimeExactMatch.f5_1300 New.1.ReferenceOTU0 f6_30
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D 0 2 * * * * 100.0 New.1.ReferenceOTU0 f6_30 *