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Viewing changes to qiime_test_data/summarize_taxa_through_plots/taxa_summary/log_20130505145120.txt

  • Committer: Package Import Robot
  • Author(s): Andreas Tille
  • Date: 2013-06-17 18:28:26 UTC
  • mfrom: (9.1.2 sid)
  • Revision ID: package-import@ubuntu.com-20130617182826-376az5ad080a0sfe
Tags: 1.7.0+dfsg-1
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qiime_test_data/summarize_taxa_through_plots/taxa_summary/log_20130505145120.txt
 
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Logging started at 14:51:20 on 05 May 2013
 
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QIIME version: 1.6.0-dev, issue-163@35f75cd
 
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qiime_config values:
 
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sc_queue        all.q
 
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pynast_template_alignment_fp    /home/jrideout/dev/qiime-deps/qiime-deps/core_set_aligned.fasta.imputed
 
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cluster_jobs_fp /home/jrideout/.virtualenvs/qiime/qiime/scripts/start_parallel_jobs.py
 
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assign_taxonomy_reference_seqs_fp       /home/jrideout/dev/qiime-deps/qiime-deps/gg_otus-12_10-release/rep_set/61_otus.fasta
 
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torque_queue    friendlyq
 
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template_alignment_lanemask_fp  /home/jrideout/dev/qiime-deps/qiime-deps/lanemask_in_1s_and_0s
 
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jobs_to_start   1
 
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cloud_environment       False
 
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qiime_scripts_dir       /home/jrideout/.virtualenvs/qiime/qiime/scripts/
 
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denoiser_min_per_core   50
 
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python_exe_fp   python
 
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temp_dir        /tmp/
 
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blastall_fp     blastall
 
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seconds_to_sleep        60
 
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assign_taxonomy_id_to_taxonomy_fp       /home/jrideout/dev/qiime-deps/qiime-deps/gg_otus-12_10-release/taxonomy/61_otu_taxonomy.txt
 
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parameter file values:
 
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Input file md5 sums:
 
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otu_table.biom: dda91090fbdc0f69056852247bcd924f
 
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Fasting_Map.txt: e16159d7122035797076d66b1a287962
 
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Executing commands.
 
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# Summarize Taxonomy command 
 
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python /home/jrideout/.virtualenvs/qiime/qiime/scripts//summarize_taxa.py -i otu_table.biom -o taxa_summary 
 
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Stdout:
 
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Stderr:
 
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# Plot Taxonomy Summary command 
 
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python /home/jrideout/.virtualenvs/qiime/qiime/scripts//plot_taxa_summary.py -i taxa_summary/otu_table_L2.txt,taxa_summary/otu_table_L3.txt,taxa_summary/otu_table_L4.txt,taxa_summary/otu_table_L5.txt,taxa_summary/otu_table_L6.txt -o taxa_summary/taxa_summary_plots/ 
 
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Stdout:
 
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Stderr:
 
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Logging stopped at 14:51:23 on 05 May 2013