1
usearch --cluster /Users/jrideout/dev/qiime_test_data/pick_otus/usearch_qf_results_no_ref_chim_detection/abundance_sorted.fasta --consout /Users/jrideout/dev/qiime_test_data/pick_otus/usearch_qf_results_no_ref_chim_detection/clustered_error_corrected.fasta --usersort --id 0.97 --slots 16769023 --sizeout --uc /Users/jrideout/dev/qiime_test_data/pick_otus/usearch_qf_results_no_ref_chim_detection/err_corrected_clusters.uc --w 64 --maxrejects 500 --sizein --log /Users/jrideout/dev/qiime_test_data/pick_otus/usearch_qf_results_no_ref_chim_detection/usearch_cluster_err_corrected.log
2
Started Thu Oct 18 14:23:30 2012
6
Hash size 16769023 (16.8M)
9
Fast search (U-sorting) enabled
10
Similarity computed from a global alignment
12
Word-counting heuristics:
13
Word length for database index 64
17
U-sorted search termination:
20
Word count rejection enabled
26
Filename /Users/jrideout/dev/qiime_test_data/pick_otus/usearch_qf_results_no_ref_chim_detection/abundance_sorted.fasta
28
Sequence type nucelotide
38
10.00 Open penalty (internal gaps)
39
0.50 Open penalty (end gaps)
40
1.00 Ext. penalty (internal gaps)
41
0.50 Ext. penalty (end gaps)
43
Fast alignment heuristics:
44
HSP seed word length 5
46
Exact word seeds (neighborhoods disabled)
51
00:00 204Mb Result: 99 clusters, avg size 1.3, avg id. 98.5%
53
Throughput 0.0 seqs/sec
56
Avg cluster size 1.3 seqs
59
Id Allocs Frees Pct Bytes
60
---------------- ---------- ---------- ------ ------------
61
seqdb 201 0 84.7% 13Mb
63
cons2 1290 0 3.9% 585.9kb
64
mx_h 564 146 2.1% 318.3kb
65
myutils 4 0 0.9% 128.0kb
66
hspfinder 398 199 0.3% 43.4kb
67
windex 502 1 0.1% 12.1kb
68
comppath 1 0 0.0% 4335.0b
69
dpmem 2 0 0.0% 1056.0b
70
---------------- ---------- ---------- ------ ------------
71
Total 2987 346 100.0% 15Mb
73
Finished Thu Oct 18 14:23:30 2012