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Viewing changes to qiime_test_data/pick_open_reference_otus/ucrss_usearch/step4_otus/smallmem_clustered.log

  • Committer: Package Import Robot
  • Author(s): Andreas Tille
  • Date: 2013-06-17 18:28:26 UTC
  • mfrom: (9.1.2 sid)
  • Revision ID: package-import@ubuntu.com-20130617182826-376az5ad080a0sfe
Tags: 1.7.0+dfsg-1
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qiime_test_data/pick_open_reference_otus/ucrss_usearch/step4_otus/smallmem_clustered.log
 
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usearch_i86osx32 v6.1.544, 4.0Gb RAM (17.2Gb total), 8 cores
 
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usearch61 --uc /Users/caporaso/code/Qiime/qiime_test_data/pick_open_reference_otus/ucrss_usearch/step4_otus/denovo_smallmem_clustered.uc --log /Users/caporaso/code/Qiime/qiime_test_data/pick_open_reference_otus/ucrss_usearch/step4_otus/smallmem_clustered.log --strand both --cluster_smallmem /Users/caporaso/code/Qiime/qiime_test_data/pick_open_reference_otus/ucrss_usearch/step4_otus/denovo_abundance_sorted.fna --usersort --maxaccepts 1 --wordlength 8 --maxrejects 32 --minseqlength 64 --id 0.97 
 
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Started Tue Apr  9 15:35:48 2013
 
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      Alphabet  nt
 
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    Word width  8
 
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     Word ones  8
 
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        Spaced  No
 
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        Hashed  No
 
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         Coded  No
 
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       Stepped  No
 
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         Slots  65536 (65.5k)
 
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       DBAccel  100%
 
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1 secs (00:00) 2.6Mb Result: 5 clusters, max size 3, avg 2.2
 
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      Seqs  11
 
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  Clusters  5
 
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  Max size  3
 
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  Avg size  2.2
 
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  Min size  1
 
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Singletons  1, 9.1% of seqs, 20.0% of clusters
 
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   Max mem  2.6Mb
 
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      Time  1.00s
 
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Throughput  11.0 seqs/sec.
 
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              Id      Allocs       Frees     Pct         Bytes
 
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----------------  ----------  ----------  ------  ------------
 
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  fastaseqsource           1           0   74.7%          17Mb
 
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           seqdb          13           0   14.0%         3.1Mb
 
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      gobuff_hdr           8           0    4.7%         1.1Mb
 
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           udbio           3           0    3.5%       786.4kb
 
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          mx_hdr           2           0    1.4%       319.2kb
 
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         myutils           8           0    0.4%        96.1kb
 
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          hitmgr           5           0    0.3%        69.6kb
 
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       udbparams           1           0    0.3%        65.5kb
 
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     udbsearcher           1           0    0.3%        65.5kb
 
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       hspfinder         199           0    0.2%        46.0kb
 
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         udbdata         508           0    0.1%        32.5kb
 
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          scorer           4           0    0.0%       4096.0b
 
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         seqinfo           6           0    0.0%       3779.0b
 
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      xdpmem_hdr           4           0    0.0%       1324.0b
 
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    pathinfo_hdr           2           0    0.0%        851.0b
 
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            Sort          40          32    0.0%        160.0b
 
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           Other           1           0    0.0%        128.0b
 
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         chainer           6           3    0.0%         64.0b
 
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----------------  ----------  ----------  ------  ------------
 
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           Total         812          35  100.0%          22Mb
 
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       2.6Mb  Curr mem
 
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       2.6Mb  Peak mem
 
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        22Mb  Total alloc
 
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      352.0b  Total free
 
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        22Mb  Net
 
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        20Mb  -Excess
 
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            Type        Busy        Free         Mem   MaxRefCnt        Gets      Allocs       Frees
 
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----------------  ----------  ----------  ----------  ----------  ----------  ----------  ----------
 
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         SeqInfo           0           0        0.0b           0
 
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        PathInfo           0           0        0.0b           0
 
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     AlignResult           0           0        0.0b           0
 
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Finished Tue Apr  9 15:35:48 2013
 
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Elapsed time 00:00
 
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Max memory 2.6Mb